Dbfetch
LOCUS NM_001312939 1041 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans Sterile alpha and TIR motif-containing
protein 1 (tir-1), partial mRNA.
ACCESSION NM_001312939
VERSION NM_001312939.3
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 1041)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 1041)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1041)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 1041)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003281).
On Apr 15, 2020 this sequence version replaced NM_001312939.2.
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..1041
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="III"
gene <1..>1041
/gene="tir-1"
/locus_tag="CELE_F13B10.1"
/db_xref="GeneID:175502"
/db_xref="WormBase:WBGene00006575"
CDS 1..1041
/gene="tir-1"
/locus_tag="CELE_F13B10.1"
/standard_name="F13B10.1h"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="Sterile alpha and TIR motif-containing protein
1"
/protein_id="NP_001299868.1"
/db_xref="EnsemblGenomes-Gn:WBGene00006575"
/db_xref="EnsemblGenomes-Tr:F13B10.1h.1"
/db_xref="EnsemblGenomes-Tr:F13B10.1h.2"
/db_xref="GeneID:175502"
/db_xref="GOA:A0A0K3ART9"
/db_xref="InterPro:IPR000157"
/db_xref="InterPro:IPR001660"
/db_xref="InterPro:IPR013761"
/db_xref="InterPro:IPR035897"
/db_xref="InterPro:IPR039184"
/db_xref="UniProtKB/TrEMBL:A0A0K3ART9"
/db_xref="WormBase:WBGene00006575"
/translation="MVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAADYS
SVDESNLDNFLMGLSPELSVYTYQMLTNGVNRSLLSSLTDEMMQNACGITNPIHRLKL
TQAFETAKHPDDVEVAMLSKQIDVFISYRRSTGNQLASLIKVLLQLRGYRVFIDVDKL
YAGKFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPI
FDTAFEFPTKEDQIPNDIRMITKYNGVKWVHDYQDACMAKVVRFITGELNRTTPTTKE
MPSISRKTTQQRWQTTNTVSRTGPSRSIGGPRMEPPTPTFFSVTPTGSQERATSTRRK
IQPSASTTSDRN"
ORIGIN
1 atggtcgatg gagatctttt acttcaatta actgagaatg atctgaagca tgatgttgga
61 atgatctctg gacttcatcg aaaacgattc ttaagagagc ttcaaacatt aaaagttgct
121 gctgattact catcggttga cgagtcgaat ttggacaact tcttgatggg attaagtcca
181 gaactttctg tttacaccta ccaaatgctc acaaatggag tcaaccggtc tcttctctcc
241 tcactcaccg acgaaatgat gcaaaacgct tgtggaatca cgaacccgat tcatcgactc
301 aagttgacac aagcatttga aaccgcaaaa catccggatg acgtggaagt tgcaatgctc
361 tccaagcaaa ttgatgtctt catttcatac agaagaagta caggaaacca actcgcaagt
421 ctcattaaag tactcctcca actccgcgga tacagagtgt tcattgatgt cgataagttg
481 tatgctggaa aattcgacag ctcattgctc aagaacattc aagccgccaa acatttcatc
541 cttgttctca caccaaacag tttggataga cttttaaatg atgataactg tgaggattgg
601 gtgcacaaag agctgaaatg tgcatttgaa caccagaaga acattattcc aatctttgat
661 actgcattcg aattcccaac aaaagaagat caaattccga atgatattcg aatgattaca
721 aagtataatg gtgttaaatg ggttcacgac tatcaggatg catgtatggc aaaagttgta
781 cgttttatta ctggagagtt gaacagaacg acaccgacca ccaaagaaat gccttctatc
841 tcccgaaaaa ctacccaaca acggtggcag accacaaata cagtaagccg tactgggcca
901 tccagaagca tcggtggacc aagaatggaa cctcctacgc caacgttctt ttcagttaca
961 ccaactggat cacaagaacg tgcaacatcg acgagaagga aaattcagcc ttctgcatcc
1021 acaacttccg atcggaatta a
//