Dbfetch

LOCUS       NM_001312939            1041 bp    mRNA    linear   INV 22-NOV-2023
DEFINITION  Caenorhabditis elegans Sterile alpha and TIR motif-containing
            protein 1 (tir-1), partial mRNA.
ACCESSION   NM_001312939
VERSION     NM_001312939.3
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 1041)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1041)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 1041)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003281).
            
            On Apr 15, 2020 this sequence version replaced NM_001312939.2.
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="III"
     gene            <1..>1041
                     /gene="tir-1"
                     /locus_tag="CELE_F13B10.1"
                     /db_xref="GeneID:175502"
                     /db_xref="WormBase:WBGene00006575"
     CDS             1..1041
                     /gene="tir-1"
                     /locus_tag="CELE_F13B10.1"
                     /standard_name="F13B10.1h"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Sterile alpha and TIR motif-containing protein
                     1"
                     /protein_id="NP_001299868.1"
                     /db_xref="EnsemblGenomes-Gn:WBGene00006575"
                     /db_xref="EnsemblGenomes-Tr:F13B10.1h.1"
                     /db_xref="EnsemblGenomes-Tr:F13B10.1h.2"
                     /db_xref="GeneID:175502"
                     /db_xref="GOA:A0A0K3ART9"
                     /db_xref="InterPro:IPR000157"
                     /db_xref="InterPro:IPR001660"
                     /db_xref="InterPro:IPR013761"
                     /db_xref="InterPro:IPR035897"
                     /db_xref="InterPro:IPR039184"
                     /db_xref="UniProtKB/TrEMBL:A0A0K3ART9"
                     /db_xref="WormBase:WBGene00006575"
                     /translation="MVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAADYS
                     SVDESNLDNFLMGLSPELSVYTYQMLTNGVNRSLLSSLTDEMMQNACGITNPIHRLKL
                     TQAFETAKHPDDVEVAMLSKQIDVFISYRRSTGNQLASLIKVLLQLRGYRVFIDVDKL
                     YAGKFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPI
                     FDTAFEFPTKEDQIPNDIRMITKYNGVKWVHDYQDACMAKVVRFITGELNRTTPTTKE
                     MPSISRKTTQQRWQTTNTVSRTGPSRSIGGPRMEPPTPTFFSVTPTGSQERATSTRRK
                     IQPSASTTSDRN"
ORIGIN      
        1 atggtcgatg gagatctttt acttcaatta actgagaatg atctgaagca tgatgttgga
       61 atgatctctg gacttcatcg aaaacgattc ttaagagagc ttcaaacatt aaaagttgct
      121 gctgattact catcggttga cgagtcgaat ttggacaact tcttgatggg attaagtcca
      181 gaactttctg tttacaccta ccaaatgctc acaaatggag tcaaccggtc tcttctctcc
      241 tcactcaccg acgaaatgat gcaaaacgct tgtggaatca cgaacccgat tcatcgactc
      301 aagttgacac aagcatttga aaccgcaaaa catccggatg acgtggaagt tgcaatgctc
      361 tccaagcaaa ttgatgtctt catttcatac agaagaagta caggaaacca actcgcaagt
      421 ctcattaaag tactcctcca actccgcgga tacagagtgt tcattgatgt cgataagttg
      481 tatgctggaa aattcgacag ctcattgctc aagaacattc aagccgccaa acatttcatc
      541 cttgttctca caccaaacag tttggataga cttttaaatg atgataactg tgaggattgg
      601 gtgcacaaag agctgaaatg tgcatttgaa caccagaaga acattattcc aatctttgat
      661 actgcattcg aattcccaac aaaagaagat caaattccga atgatattcg aatgattaca
      721 aagtataatg gtgttaaatg ggttcacgac tatcaggatg catgtatggc aaaagttgta
      781 cgttttatta ctggagagtt gaacagaacg acaccgacca ccaaagaaat gccttctatc
      841 tcccgaaaaa ctacccaaca acggtggcag accacaaata cagtaagccg tactgggcca
      901 tccagaagca tcggtggacc aagaatggaa cctcctacgc caacgttctt ttcagttaca
      961 ccaactggat cacaagaacg tgcaacatcg acgagaagga aaattcagcc ttctgcatcc
     1021 acaacttccg atcggaatta a
//