Dbfetch
LOCUS NM_001306540 7068 bp mRNA linear INV 18-OCT-2019 DEFINITION Caenorhabditis elegans Protein-tyrosine-phosphatase (ptp-3), partial mRNA. ACCESSION NM_001306540 VERSION NM_001306540.2 DBLINK BioProject: PRJNA158 BioSample: SAMEA3138177 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 7068) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 7068) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (16-OCT-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7068) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (09-OCT-2019) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 7068) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Sep 4, 2019 this sequence version replaced NM_001306540.1. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..7068 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene <1..7068 /gene="ptp-3" /locus_tag="CELE_C09D8.1" /db_xref="GeneID:174685" /db_xref="WormBase:WBGene00004215" CDS 1..6603 /gene="ptp-3" /locus_tag="CELE_C09D8.1" /standard_name="C09D8.1l" /note="Confirmed by transcript evidence" /codon_start=1 /product="Protein-tyrosine-phosphatase" /protein_id="NP_001293469.1" /db_xref="GeneID:174685" /db_xref="GOA:V6CJV7" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="InterPro:IPR036116" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/TrEMBL:V6CJV7" /db_xref="WormBase:WBGene00004215" /translation="MIQFRNKNNSMNRIARHLRNVARRKGSSLLLFLMLSTVLVAAKE DDPARLVVRPDSSTVVDESKISFFCRADGNPLPSVIWRVNGKSITDHNRISIKSLATG LSTLRFERVSLDDNATVVSCSADNGVANPVVAEASLTVVPRDKVPIGFPQIELHPSLK SVEQGKTAYVSCRVRGDPRAKVLWLRDLIPLDIRADGRYSVSTIGNPGALMIQHAREE DQGKYECIARNTLGVAHSKAANLYVKVRRVPPYFSYKLERQYVVGVGGNINLTCVAVG YPMPRVFWKKTDLMVLDDPSTAPIGKNVLTLTHVESTENFTCVAVSALGNIEATTTVI AKELPPPPVNIVVSSVTSESVVITWKPPKYNEAINKYVVNYRLKYSEGRSSRGKTMET LENSLVIDGLVAFQTYEFTVRSAGPVGVGLESLPVEAQTKPSKPATAPVSPQARSLNR DSILVKWGPCEQPNGLITGYKVYYTNDLVTTPIREWKQHDAKSDEFMTTINGLEPDSR YFVRVIAQNSEGDSPLSTLVTVATRQGIPGQPPMLTVKALDSRRMQLTWDKPLYSSPV VGYTVRYNTSDGEKELTLTSPHEKHVVTGLHPDKYYYFRVAAYSDRGQGEFTEPMISK TIASIPLSSPTIVSAAATSSKSVEIRWKGPEQKKLNGVLTAYRINYFRLEDSKTANLE SVEYDEDMDDSSSFLDRMSVVVPSDATSYVLSDLLPYSSYEITVAASTMDGYGPESSI RVVKTLEDVPSAPRNFNAELTSATSVKLTWDAPAAANGALLGYYVYLDRMVNGEPVVE KGSKKRIVMIRDSSKRYFELDSLDPNTEYSFRLNAFNRNGDGEFSERKSIITQGIPPE APEIVSVSLDRDEPPVVARIEWKMPKMKPNETPIEKYNLWLRAQGYPDSYVKAKTVDG TDLSTTISGLWMGVVYDVLLAAENREGRSQNATETIATPVGSPDGEPIDVQYEVMKGK IVVSWRPPSEEKRNGNITSYKAILSAMDATADRYEQPVPAPSTSSTFEVNVRRAYLFK VAAATMKGIGPYSPVLTINPDPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVV KYMHEPGNRMDTEKWKQLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVKNNLTLNE QFNKVRVTNYMTNFQRQGPCSDPPTVLESVTPTYMVQNLRVLWKTSNSVQLTWEYNGP RNVGFYVNHTGRKDYVNHELQEKTMSTPGFGQDVDEKHREYLWTNLRPHMMYTIHVGV RTLPPGARKYWPQEVVTITDPTGPPFVDVPKLVDSSGTQPGQQMIRLTPATEEYGPIS HYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKKLKRKASEVGDDS QSASYHPKEKRARRATVPGAYVTARLSADRVKQQYRNNQPFIVGDSQLYDGFTNYPLE HNLHYRLMMRAFAKNDVRTKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQK SSPWVGACIAFLVLFSIVGMLICWWLRCNKKSAGRHPRHGSITKVALTGNIMNGGGGI PGETSKLLSTSNEYGRQIMNPYEQMNGNHHMESSMDLYPLPTSHSRSNGYAPVPVAIP SLPNNGNNMTTVSHPAVPIAELANHIERLRMNNNAGFQSEFESIETGQHFTWEHSSAD MNKHKNRYANVAAYDHSRVVLSNVEGYPGMDYINANYVDGYDKPRSYIATQGPLPETF SDFWRMVWEEQSVTIVMLTNLEERSRVKCDQYWPSRGTATYGDIEVTLLESVHLAHYT MRTMRLKMVGEPEVREIKHLQYTAWPDHGVPDHPTPFLIFLKRVKTLNPNDAGPIISH CSAGIGRTGAFIVIDCMLERLRYDNTVDIYGCVTALRAQRSYMVQTEEQYIFIHDAVL DAVNSGSTEVPASRLHQHLHILSQPSADQLSGIDMEFRHLTTLKWTSNRCTVANLPVN RPKNRMLSAVPYDSNRVIMRLLPGADGSDYINASWIDGYKERGAYIATQAPTNETAAD FWRAIWEHNSPIIAMLVRTNERGQEQCSDYWPLETGVQVGMLVVEPMAEYDMKHYHLR EFRISDINTREVRTVRQFHFMEWPDVGKPHTADHFLDFVTQVHNTYAQFGCTGPITVH CCSGAGRTAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQEPEQYHFLYLAAY EYLAAYDNFS" ORIGIN 1 atgatccaat tcagaaacaa gaacaacagt atgaatcgga tagcgcgtca cttacgaaat 61 gtggcacgcc gaaaaggctc gtcgctgctt ctgtttctaa tgctaagtac cgtactggtc 121 gcggcaaaag aggacgaccc cgcccgacta gtcgtccgtc cagactcatc aaccgtcgtc 181 gatgaatcga aaatctcatt tttctgtcga gcagatggaa atccgttgcc tagtgtgatt 241 tggagagtca atggaaaatc cataacagat cataatcgaa tatcaataaa atccttggcc 301 accggcttat cgactctccg tttcgaacgt gtctctctgg atgacaatgc gactgttgtg 361 tcctgctcgg ctgataatgg agttgccaat ccagttgtcg cagaagcatc actaaccgtt 421 gtcccacgag acaaagttcc gattgggttc cctcaaattg aacttcatcc atcattgaag 481 tcggtcgaac aggggaaaac tgcttatgtc tcttgtcggg tccgaggaga tcctcgagca 541 aaagtccttt ggctccgtga cctgatcccg ctagacattc gtgcagatgg tagatactct 601 gtaagtacaa tcggaaaccc tggagccctg atgattcagc atgctcgaga agaagatcag 661 ggaaaatacg aatgcattgc aaggaataca ttaggagttg ctcactcgaa agccgcaaat 721 ctttatgtta aagttcgccg agttcctccc tacttctctt acaaattgga acgtcaatat 781 gttgttggcg tcggcgggaa tatcaacttg acatgcgttg ccgtgggtta tccaatgcca 841 cgtgtcttct ggaaaaagac cgatttgatg gtacttgacg atccttctac tgctccaatt 901 ggcaaaaatg tgctcacact gacacacgtg gaatcgactg aaaacttcac ctgtgttgct 961 gtcagtgctc tcggaaacat tgaggcaaca acgacagtca tagctaaaga acttcctccg 1021 ccaccagtca acattgttgt ctcatcagta acttctgaat ctgtagtgat tacctggaag 1081 ccaccgaaat acaatgaagc tatcaataaa tacgtggtta attataggct caaatattcc 1141 gaaggtagat catcgcgtgg taaaaccatg gagacactag agaatagcct ggttatagac 1201 ggtcttgttg cgtttcagac atacgaattc acagttcgaa gtgccggtcc agttggcgtt 1261 ggtttagagt cattaccagt tgaggcccaa acaaaaccaa gtaaaccagc aacagctccc 1321 gtcagtccac aagccagaag tctgaatcgc gattcgattc tggtgaaatg gggtccatgt 1381 gagcaaccaa acgggctcat aacaggatat aaagtgtatt acacaaatga tctggttaca 1441 actccgattc gagaatggaa acaacacgac gcgaaatcag acgaattcat gaccaccatc 1501 aatggcctcg aacctgattc aagatatttc gtacgagtga ttgctcaaaa ctctgaaggc 1561 gattccccat tatccacatt ggttacggta gcaacccgtc aaggaatccc tggccaacct 1621 ccaatgttga cggttaaagc gctcgactcg aggcgaatgc aattgacatg ggacaaacct 1681 ctttactcgt ctccagttgt tggatacact gtccgatata acacttcgga tggagaaaag 1741 gagctgacat tgacatctcc tcatgaaaag catgtggtga ctggattgca tccggataag 1801 tattattact ttagagttgc tgcttactcg gatagaggac agggagagtt cactgaacca 1861 atgatttcca aaacgattgc atcgatacct ctatcctctc caacaattgt gtctgcggcg 1921 gcaacgtcct cgaaaagtgt ggaaatccga tggaagggtc ccgaacagaa aaagttgaac 1981 ggcgtcttga cggcttatcg gattaactac tttcgtctcg aggactctaa aactgcaaat 2041 ttggaatcgg ttgagtacga cgaggatatg gacgattcct cttcatttct tgatcgaatg 2101 tctgttgtgg tgcctagtga tgcgacctct tatgttctat ccgatcttct accgtactca 2161 tcctacgaga ttactgtcgc agcgtcgaca atggatggat acggcccgga aagctcgatt 2221 cgtgttgtga aaactcttga ggatgtacca tcagcgcctc gaaacttcaa tgcagagctg 2281 accagtgcca catcggtcaa actgacatgg gatgctccag cagcggccaa cggagccctt 2341 ctcggctact acgtgtacct ggatcgaatg gtgaacggag aaccggtcgt tgaaaagggc 2401 agcaagaagc gaatagtaat gattcgagat tcttcgaaac gatactttga gctggatagt 2461 ctcgacccga acaccgagta ctcgttccga ttgaacgcat tcaacagaaa cggggatgga 2521 gagttttcgg agcggaaaag catcatcaca cagggaattc cccccgaagc gcccgagatc 2581 gtgtctgtat cactggatcg cgacgagcca cccgtcgtag ccagaattga gtggaagatg 2641 ccgaaaatga agccgaacga gacaccgata gaaaagtaca atctatggtt acgcgcacaa 2701 ggatatccgg actcatatgt caaggcgaag acagtcgacg gaaccgatct atcaactact 2761 atttctggtc tttggatggg agtagtgtat gatgttctgc ttgccgctga aaatcgagaa 2821 ggacgatccc aaaatgccac agaaaccatc gcaacgccgg ttggaagtcc cgatggtgaa 2881 ccgattgatg ttcagtacga agtgatgaaa ggaaagatcg tcgtttcatg gaggccccca 2941 tctgaggaga agagaaatgg taacatcaca agttacaagg ccattttgtc ggcgatggat 3001 gctactgcgg atcgatatga gcaaccggtg cctgctcctt ccacatcatc gacattcgag 3061 gtgaacgtac gcagagccta cctgttcaaa gtagcggccg ccacaatgaa gggtatcgga 3121 ccctactcgc cagtgctcac aatcaacccc gatccagctg cacttgtcgg acctcctacc 3181 aatgttcgcg ttgaagccac aagcaattcg acagcagttg tgcaatggga tttcgaatca 3241 cagaaggctg actcatttgt tgtcaagtac atgcacgagc ctggaaaccg aatggacaca 3301 gaaaagtgga agcagttgcc cgttgtgagc atagataaag agaacccaaa acgatttgca 3361 gtggtctccg acttgaacgc gcataagcca tacgcatttt gtgtgttggc cgttaagaat 3421 aatctcacgc tcaatgaaca attcaataaa gtacgtgtga caaattacat gacaaatttt 3481 cagcgacaag ggccttgctc tgatcctccg actgtccttg agagtgtcac gccgacgtat 3541 atggttcaaa acctgagggt tctgtggaag actagcaact ctgtgcagct cacgtgggag 3601 tataatggtc cgcgaaacgt cggattctat gttaatcaca ctggacggaa ggattatgtg 3661 aatcatgagc tccaggagaa aacgatgtcg acaccaggat ttggtcaaga tgttgatgag 3721 aagcatcgtg aatatttgtg gacgaatctt cggcctcata tgatgtacac gatacatgtt 3781 ggagtaagaa cgcttccacc tggagccaga aagtattggc ctcaagaagt ggttacaatc 3841 actgatccaa ctggaccacc ttttgtcgat gttcctaaat tggttgattc ctccggaact 3901 caaccaggac agcagatgat cagattgaca cctgctacgg aagagtatgg acctatttct 3961 cattattgga ttatacttgt tccagcgaat tatagcacgg aagatgtcgt aaacctggat 4021 ccaattgaat tggaaaaagc tacggctgaa aagcgcgccc agcttgccag atccttgagc 4081 gtgtctccat cgaaaaagtt gaaacgaaaa gcttcggaag ttggagatga ttcgcaaagc 4141 gcatcttacc atccgaagga gaagcgagct cgtcgagcaa ccgtgccagg agcatatgtg 4201 actgcaaggt tgagtgctga tcgagtcaag caacaataca ggaataatca accatttatt 4261 gtgggagatt cacagttgta tgacgggttc accaactacc cactcgagca caaccttcac 4321 taccgactga tgatgcgggc gtttgcgaaa aatgatgtgc gaaccaagga cagtttcgaa 4381 caacgtgcac caatgagcga gaagctgtcc cgtatgtact ctgattctgt tctaactgag 4441 ccattcacaa tcaaatcggc tcttcgcgga gcttcgcaga agtcgtctcc ttgggttgga 4501 gcgtgcatcg ccttcttggt cttgttctcg attgttggaa tgctgatatg ttggtggttg 4561 cgttgcaata agaagtctgc tggacggcat ccacgacatg gttctatcac aaaggttgcg 4621 ttgactggaa atattatgaa tggaggtggt ggaatacctg gagaaacaag caagttatta 4681 tcgacttcca atgaatacgg acgacagatt atgaacccct atgagcagat gaatggaaat 4741 catcatatgg aatcatcgat ggatctttat cctttgccaa caagtcactc tagatctaat 4801 ggatatgcac ctgttcctgt cgcaatacca tctcttccaa ataatggaaa caatatgact 4861 acagtatccc atccagctgt tccgatagct gaacttgcga atcatatcga gaggcttcga 4921 atgaacaata atgcaggatt ccagtcagaa tttgaatcta ttgaaactgg acaacacttc 4981 acttgggaac actcgtctgc tgatatgaat aagcataaga atcgatacgc gaatgtggct 5041 gcctatgatc attccagagt tgtactttcc aatgttgaag gatatccagg aatggattac 5101 atcaacgcaa attatgtgga tggatatgac aaaccaagaa gctacattgc cacccaggga 5161 ccactcccgg aaacattttc ggatttctgg agaatggttt gggaggagca atcggttaca 5221 attgtgatgt taacaaatct ggaggaacga agtcgagtga aatgtgatca atactggccg 5281 agtcggggaa ctgccacata tggagatatc gaggtgacac tgttggaaag cgttcatttg 5341 gctcattata cgatgagaac gatgcgattg aaaatggttg gagaacctga agttcgagag 5401 atcaagcatc tacagtatac tgcatggccg gatcatggag ttcccgatca tccgacaccg 5461 tttttgatct tcctgaagag ggtgaaaacg ctgaatccaa acgatgcagg accaatcata 5521 tcgcattgta gtgctggaat tggaagaact ggagccttca ttgtgattga ttgtatgctg 5581 gaacgtctcc gctacgacaa tacagttgat atctatggat gtgttactgc gttgagagca 5641 cagaggagtt atatggtaca aactgaagag caatacatct ttattcatga cgctgtcctt 5701 gatgcggtga acagtggatc cacagaggtt cctgccagtc ggttgcatca acatttgcac 5761 attctttcac aaccatcagc tgatcaattg tctggaattg atatggaatt caggcatttg 5821 acgacactga aatggaccag caatcggtgt actgttgcga atcttccggt aaatcgacca 5881 aagaaccgga tgctcagcgc agtaccgtat gattcgaatc gagtaataat gagattgctt 5941 cctggagctg acggatccga ttacatcaac gcatcatgga ttgacggtta caaagagcgc 6001 ggagcctaca ttgccactca agcaccaact aacgagacag ccgcagattt ttggcgagca 6061 atttgggagc ataacagccc gataatcgcc atgctggtac ggacaaacga acgaggacaa 6121 gagcaatgta gtgactattg gccattggaa actggagttc aagttggaat gctcgtcgtt 6181 gagccgatgg ctgaatatga tatgaaacat tatcatcttc gagagtttag gatttcggat 6241 attaatactc gcgaagtccg aaccgttcgt caattccatt tcatggagtg gcctgatgtc 6301 ggaaagccgc acacagcaga tcacttcctc gactttgtca cccaagttca caatacgtat 6361 gctcaattcg gatgtactgg cccgattaca gtacactgtt gctctggagc cggacgcact 6421 gcagtcttca tcgcactttc gatcattttg gataggatgc gtgctgagca tgttgttgat 6481 gttttcacaa cggttaaact gctccgaaca gaacgtcaaa acatgattca agagccagag 6541 cagtatcact tcctgtatct agctgcatat gagtacctag ccgcctatga caatttctcg 6601 tagatatccc tttcaccccc agtttgcttc tagttgaaaa ctcccggtag aattgttcga 6661 tctttcacac attttttaac acaattttct atttttttgt attccaaaaa ttacatataa 6721 tttactgaca aaaacgcact tctcccacta cacgaacggg ttcaattttg taattgttct 6781 gtgtcctttt gcctcggaaa ttttcattct ctttctttcc aaaatgttac gggttactgt 6841 accccatcca ttaacactct tctcttatcc atagttctcc acccaatcca ttgctcatgt 6901 ctctcaaaca cccccccgga ttgtttgtaa atattcgaag tctctttttt ctacatcatc 6961 atcattgctg ttcagccatc tttttctaat aatattgtat tcgttggtat gtgatctttg 7021 ttctcttaca ccgactttgg cagattgctt taatgaacta atttctat //