Dbfetch

LOCUS       NM_001306253             519 bp    mRNA    linear   INV 22-NOV-2023
DEFINITION  Caenorhabditis elegans Collagen triple helix repeat protein
            (col-47), partial mRNA.
ACCESSION   NM_001306253
VERSION     NM_001306253.3
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 519)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 519)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003279).
            
            On Apr 15, 2020 this sequence version replaced NM_001306253.2.
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="I"
     gene            <1..>519
                     /gene="col-47"
                     /locus_tag="CELE_Y18H1A.12"
                     /db_xref="GeneID:4363004"
                     /db_xref="WormBase:WBGene00000624"
     CDS             1..519
                     /gene="col-47"
                     /locus_tag="CELE_Y18H1A.12"
                     /standard_name="Y18H1A.12b"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Collagen triple helix repeat protein"
                     /protein_id="NP_001293182.1"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000624"
                     /db_xref="EnsemblGenomes-Tr:Y18H1A.12b"
                     /db_xref="GeneID:4363004"
                     /db_xref="GOA:V6CLD0"
                     /db_xref="InterPro:IPR008160"
                     /db_xref="UniProtKB/TrEMBL:V6CLD0"
                     /db_xref="WormBase:WBGene00000624"
                     /translation="MDGEAGHSNMDVFMSPTGCIRCPAGPPGSPGDHGSPGEPGYPGP
                     SGPPGEPGYATIGLIGPPGLAGQDGLDGAPGEPGVGGMDAVKIVSVDGKIGRRGEAGN
                     KGSKGSRGGVGKAGGPGVAGEMGEKGARGEDGKPGESGKPGAPGIPGKDGTYCRCPDR
                     NRYDIYPYKSKI"
ORIGIN      
        1 atggatggag aggctgggca cagtaatatg gatgttttca tgtcaccaac aggatgcatc
       61 cgttgcccag cgggtcctcc aggttctcct ggtgatcatg gttctcctgg tgaaccaggg
      121 tacccgggac cttcaggacc tccaggggaa cccggttacg caacaattgg gcttatcggg
      181 ccacctggac tcgcaggcca agatggtcta gatggagctc ctggcgagcc gggagtaggt
      241 ggaatggatg cagtgaagat tgtttcagtt gatggaaaaa ttggaagaag aggagaagcg
      301 gggaacaaag gaagcaaagg atctcgagga ggagttggaa aagctggagg gcctggggtg
      361 gctggagaaa tgggagaaaa aggagcaaga ggtgaagatg gaaagcctgg agagtctgga
      421 aagcccggcg cacctggaat ccctggaaaa gatggtacat actgccgatg tcccgatcga
      481 aatcgttacg atatttatcc atataaatcg aaaatctga
//