Dbfetch
LOCUS NM_001306253 519 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans Collagen triple helix repeat protein
(col-47), partial mRNA.
ACCESSION NM_001306253
VERSION NM_001306253.3
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 519)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 519)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 519)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 519)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003279).
On Apr 15, 2020 this sequence version replaced NM_001306253.2.
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..519
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="I"
gene <1..>519
/gene="col-47"
/locus_tag="CELE_Y18H1A.12"
/db_xref="GeneID:4363004"
/db_xref="WormBase:WBGene00000624"
CDS 1..519
/gene="col-47"
/locus_tag="CELE_Y18H1A.12"
/standard_name="Y18H1A.12b"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="Collagen triple helix repeat protein"
/protein_id="NP_001293182.1"
/db_xref="EnsemblGenomes-Gn:WBGene00000624"
/db_xref="EnsemblGenomes-Tr:Y18H1A.12b"
/db_xref="GeneID:4363004"
/db_xref="GOA:V6CLD0"
/db_xref="InterPro:IPR008160"
/db_xref="UniProtKB/TrEMBL:V6CLD0"
/db_xref="WormBase:WBGene00000624"
/translation="MDGEAGHSNMDVFMSPTGCIRCPAGPPGSPGDHGSPGEPGYPGP
SGPPGEPGYATIGLIGPPGLAGQDGLDGAPGEPGVGGMDAVKIVSVDGKIGRRGEAGN
KGSKGSRGGVGKAGGPGVAGEMGEKGARGEDGKPGESGKPGAPGIPGKDGTYCRCPDR
NRYDIYPYKSKI"
ORIGIN
1 atggatggag aggctgggca cagtaatatg gatgttttca tgtcaccaac aggatgcatc
61 cgttgcccag cgggtcctcc aggttctcct ggtgatcatg gttctcctgg tgaaccaggg
121 tacccgggac cttcaggacc tccaggggaa cccggttacg caacaattgg gcttatcggg
181 ccacctggac tcgcaggcca agatggtcta gatggagctc ctggcgagcc gggagtaggt
241 ggaatggatg cagtgaagat tgtttcagtt gatggaaaaa ttggaagaag aggagaagcg
301 gggaacaaag gaagcaaagg atctcgagga ggagttggaa aagctggagg gcctggggtg
361 gctggagaaa tgggagaaaa aggagcaaga ggtgaagatg gaaagcctgg agagtctgga
421 aagcccggcg cacctggaat ccctggaaaa gatggtacat actgccgatg tcccgatcga
481 aatcgttacg atatttatcc atataaatcg aaaatctga
//