Dbfetch
LOCUS NM_001276930 5178 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Neurexin-3-beta (nrx-1), partial mRNA. ACCESSION NM_001276930 VERSION NM_001276930.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 5178) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 5178) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5178) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 5178) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Apr 15, 2020 this sequence version replaced NM_001276930.2. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..5178 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene <1..>5178 /gene="nrx-1" /locus_tag="CELE_C29A12.4" /db_xref="GeneID:179503" /db_xref="WormBase:WBGene00007799" CDS 1..5178 /gene="nrx-1" /locus_tag="CELE_C29A12.4" /standard_name="C29A12.4k" /note="Confirmed by transcript evidence" /codon_start=1 /product="Neurexin-3-beta" /protein_id="NP_001263859.1" /db_xref="EnsemblGenomes-Gn:WBGene00007799" /db_xref="EnsemblGenomes-Tr:C29A12.4k" /db_xref="GeneID:179503" /db_xref="GOA:I2HAJ6" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001791" /db_xref="InterPro:IPR013320" /db_xref="UniProtKB/TrEMBL:I2HAJ6" /db_xref="WormBase:WBGene00007799" /translation="MRQKFDDTGQYLTIWLVFTVSLFSVVDSIILTGAPDSYARYPKW AHSFENSLSMELKTRQSDGMLLYTDDGGTHGNFYSLTIVEGHIQLDFRLGDNSNEFGQ RRPVNTIRIEEVRIDDDKWHTLTIFQSWENVKLELDYTLVFKILNQRSFVFGNILKNS DVFIGGLPPNMHMLPVMSSPLRRYARHLAVNVRNLMYRQYPQGVTSPQLLESVGTRTN EDDHCKSKSMSSREQFVCLNDGECYSSNDGPHCDCQFSDHDGRNCEIEKNDGELTFGG DEWVGYDVSLNISAAVRAKKENLTLTFKTVHGTSMLFYAGDEKSYLHVMLQDGAIIAS SKFDGSDARIIRMFNSFPSQRYDDDSWHTIILERSLQMHSEEMVAIHMTLIVDGRRDE IRQYAPELDWISNSFGFLGSIPKHNPSKEVNRVSFRGCMKKVRYDIDATRILLVNLAD QSYGGSVVKTEGDISYSCKNPSQRSDVLSFTETSSYLTLPRWNSLSSGSLSFHFRTTS SDGLILYHGVMQHNATDYVAFELIDSHLFMIINLGSGVVRLQTTSMKVSDGEWHHVQL DRLSRTGSVIVDAIKIDFSTPGVSANLIIDDPIFIGNVPNNSLVYPSSVWSIALQKGY TGCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNPCQNFGKCSKNLNS FDCDCSNTNFEGKQCELEQTAVEVNGEESKVHVLAHTKVSQVEHIKIRFRTTSSRGVL FDTGANGKNDKITVFLNDSQLNLFLQDSSTNNTFSWGKSLSDNHWHELQVRRLGQKLL LYLDGFWSHSIYLQNPISVEIDEVGAAFSVHSSAPPPRDEHFKGFLSKLVFNGNDYLA KTKMNSAQLSKSSSRESKGQRNVKTRIASISFTNSTGYVAFSSDKISGLTGSFRVQFK FQTLMRSALLFFTLPKHDYDQSFRLQMLNGRLKYTYRTSGQEFHTTSPKLPHRQHLSD MRWHNVLIYQDEKTHDHVLLVDNSSTTLIIDKIKKVESKMSGKLYFGSNPLGVSRPSN GFRGCISTLRINENALDLYEDADSRMKVNRGCSGPIARCIEDACANHGRCIQLWSSIR CDCSLTAHSGDRCQNPSTTVRFDGSPSAIFYEYAPNERPTTSKDYFVFSFRTTQPNGV LISIECAADQDYFTIFLNKGYLNAHYNLGNRDHTTSYHTRILNDGFPHVIKISRTEAN MTIQVDKLPSLRYRPKRASDLVLLNMQTRISIGAAFNTRHLDQKRLLRHRRNTEIFDS YQGEISGVNVNGLMILDLYENGSNRIHTIGAPQTTAVSEQVSSESEEDDELAEMMMAH SIDENPNEALIESLAPSCLSLEEQQSCFIDTDDSTGFFSPVLPTVANFPTTRQTEPET TRRPLSPSKMTPSLPSPTTTTLPVFFLSQITDGDESEDEFDGSGDDLFGGDGVGITAA TQPSVKRTTSISVVTKVLTTTSEPSSTHRSTVLPRPYASVKEAAEQNPDYLGASIWNQ VDTLPEPMVTGPAWRTNKSLTTTATTEASSTKSNRKTTTTTTTSATTTIRIQQRPNYD IDNEVTALITSSLAPQKTRPKSTPHFTVYPVRPTTPMGDTITTTMQAATVTDFPRTPL IMCSSLAVIIAIAAVVFFVFKCRQNPPNSEHYTMAMKSQSGYTAIAPELSPPMNHDRS NDSCTQPLLAKPHINGNGYEPLKGAVIANGNGATATMMRNGNGNGVAKKKDFKEWYV" ORIGIN 1 atgagacaaa agtttgatga tactggacaa tacttaacga tatggcttgt ttttacggtt 61 tcattgttca gcgtagtaga ttcaattatt ctcactggag ctccagactc ttatgcgagg 121 tatccaaaat gggcgcactc attcgaaaat tcgctatcaa tggaattgaa aacacgacaa 181 tccgatggaa tgttactgta cacagacgat ggtggaactc atggaaattt ttattcactg 241 acaattgtag aaggtcatat tcagttagac tttaggttag gtgacaattc aaatgaattt 301 ggccaacgac gaccagtgaa tacaattcga atagaagaag ttagaataga tgacgacaaa 361 tggcatacgt tgacgatatt tcaatcatgg gaaaatgtga aactggagtt ggattatact 421 cttgttttca agattctgaa tcaacgaagc tttgtatttg gaaacattct caaaaattca 481 gatgttttca ttggaggatt accaccaaat atgcacatgc ttcccgtaat gagttctcct 541 cttcgtcgat acgctcgtca tttggcagtc aacgtgcgca atttgatgta ccgccagtat 601 ccccaaggtg tcacatctcc tcagcttctg gaatcagttg gaacacgcac caacgaagac 661 gaccattgca agtcaaaatc gatgtcttca cgcgaacaat ttgtgtgcct caacgatggt 721 gaatgttatt catcaaatga tggaccacat tgtgactgcc agttctctga tcatgacgga 781 aggaattgtg aaattgaaaa aaacgacgga gaattaacat ttggaggtga tgaatgggtc 841 ggatatgatg tttcattgaa tatatcagct gcagtgagag ccaagaaaga aaatctaaca 901 ttgacattca aaactgtaca tgggacatct atgttgtttt atgcgggaga tgaaaagagt 961 tatcttcacg taatgctcca agatggggct ataatcgctt cttcgaaatt tgacggctcc 1021 gatgctcgaa tcattcgaat gttcaattca tttccatctc aaagatatga tgatgattcc 1081 tggcatacaa taattttgga gagatctctt caaatgcatt cggaggaaat ggtggcgata 1141 catatgactt tgatagttga tggccggagg gatgaaattc ggcagtatgc acctgaactt 1201 gattggatat caaattcatt tggttttctt ggttcaatac caaaacataa tccatcgaaa 1261 gaagtgaaca gagtatcatt tcgaggttgt atgaaaaaag ttcgatatga catagacgct 1321 acaagaatct tattagttaa tctggccgat caaagttacg gtggaagtgt tgtcaaaacg 1381 gaaggagata tttcatattc ctgcaaaaat ccatcacagc gatctgatgt gttatcattc 1441 acagaaacct catcatatct cacactacca cgttggaata gtttgtcaag tggaagtttg 1501 tcgtttcatt ttcgaaccac gtcttcagat ggcttaatcc tttatcacgg agtgatgcaa 1561 cacaatgcaa ctgactacgt ggcatttgaa ctcatcgaca gtcatttatt catgattatc 1621 aatctaggat ccggagtagt tcgacttcaa acaacatcta tgaaagtcag tgatggtgaa 1681 tggcatcatg ttcaattaga cagactttca cgaactggca gtgtaattgt tgatgctatc 1741 aaaatcgatt ttagtacccc aggagtgtct gcaaatctta tcatcgatga tcctattttt 1801 attggaaacg taccaaataa ttcactggtt tatccatcat ctgtgtggtc aattgcactt 1861 caaaaaggat acacaggatg catcaaaaat attcgaatga atggagtttc tacaaaaatt 1921 ggccaagaat ttgaagcatc caattccact ggaattgaac ttggatgttc tttgtcaaat 1981 gaattagata tttgcgaacc gaatccatgt cagaatttcg gaaaatgtag caaaaattta 2041 aactcgtttg attgtgactg ttcgaataca aattttgaag gaaaacaatg tgaactcgaa 2101 caaactgcag ttgaagttaa tggagaagaa tcaaaagtcc acgtactggc tcacacaaaa 2161 gtttcacagg ttgagcatat caaaattaga ttccgaacta catcatcaag aggtgtattg 2221 tttgatacgg gtgcaaatgg gaaaaatgac aagattactg tatttttgaa tgatagtcaa 2281 ctcaatttgt ttcttcaaga ctcatctaca aataatacat tttcttgggg taaatcgtta 2341 tctgataatc attggcacga gctgcaagtg cgaagactgg gccagaaact tttgctttat 2401 ttggatggat tttggagtca tagcatatat cttcaaaatc cgatttctgt cgaaattgac 2461 gaggttggcg ctgcattttc tgtgcattca tcggcgccac ctccaagaga cgaacatttc 2521 aaaggatttc tttccaagct agtttttaac ggaaatgatt atctcgcaaa aacaaaaatg 2581 aacagtgctc aattgagcaa gtcgtctagc cgagagagca aaggacaaag aaatgtaaaa 2641 acaagaattg catcaatatc tttcacaaat tcgacgggtt atgtagcttt ttctagtgac 2701 aaaatatcag gattaactgg ttcatttcgg gttcaattca agtttcaaac acttatgcga 2761 tcagctcttt tatttttcac tttgccaaaa catgattatg atcaatcatt tcgattgcaa 2821 atgctcaacg ggagattgaa atacacttat cgaacatctg gccaagagtt tcacacaaca 2881 tctccaaaac ttccccatcg tcaacatctt agtgatatga gatggcacaa tgttttaatt 2941 tatcaagatg aaaaaacaca cgatcatgta cttcttgttg ataattcttc gacaacattg 3001 attattgata aaatcaagaa agtggaaagt aaaatgtctg gaaaactgta ttttggaagt 3061 aatccactcg gagtatcaag accatcgaat ggattcagag ggtgcatttc aacacttcga 3121 ataaatgaaa atgcattgga tctttatgaa gatgctgata gtcgaatgaa agtgaataga 3181 ggatgtagtg ggccaatagc tcgatgtata gaagatgcat gtgcaaacca tggacgatgt 3241 attcagcttt ggagctcaat tcgatgtgat tgcagtctga ctgctcattc aggagatcgg 3301 tgccagaatc cctccacaac agtccgattt gatggaagtc cttctgcgat tttctatgaa 3361 tatgctccaa acgagagacc aacaacaagc aaggactatt ttgtattttc atttcgaaca 3421 acccagccaa acggagtatt aatatcaatc gaatgtgctg ccgatcaaga ttattttaca 3481 atattcttga acaaaggtta cttgaatgct cactacaact tgggaaatcg tgatcataca 3541 acaagttatc acactagaat tctgaatgat ggatttccac atgtcattaa aatatctaga 3601 actgaagcaa atatgacaat tcaagtggat aagctaccat cattacgata tcgaccaaaa 3661 agagcaagtg atcttgtttt gttgaatatg caaaccagaa tatctatcgg agcagcattc 3721 aatactaggc atttggatca aaaaagactg ttacgtcatc gtcgaaatac ggagattttt 3781 gattcatatc agggagaaat atctggagtc aacgtcaatg gattgatgat tttggatctt 3841 tatgaaaatg gttctaaccg catccacacc attggcgcac cccaaacaac agctgtatcg 3901 gagcaagtga gcagtgaatc agaagaagac gacgagctag cggaaatgat gatggcacat 3961 tccatcgatg agaatccaaa cgaagcactc atcgagtcat tggctcccag ctgtctaagt 4021 cttgaagaac aacagtcgtg cttcattgat actgacgatt caacaggatt cttctcgcca 4081 gtccttccaa ctgttgccaa ctttccaact acaagacaga ctgaaccaga aactacgcgg 4141 agacctctgt cgccttcaaa aatgacacct tctcttcctt ctcctaccac caccactttg 4201 cctgttttct ttttgtcaca aatcactgac ggcgatgaat cagaagatga atttgacggc 4261 tccggtgacg atctctttgg tggagatggt gtcggaataa cagccgcaac acaaccgtcg 4321 gtgaagcgta ccacgtcgat ttctgttgta acaaaagtac taacaaccac ttctgaacct 4381 agcagcacgc atcgttcgac ggttcttcct agaccgtatg cgagtgtgaa agaggccgct 4441 gagcagaatc cagattattt gggagcaagt atttggaatc aagtggatac tttacctgaa 4501 cctatggtca caggacctgc atggagaaca aataagtctt tgactacaac agcaacaact 4561 gaagcttctt caacaaaaag taatcgaaag accaccacga cgacaacgac gtcagcaacg 4621 actacaattc gtatccaaca acgaccaaat tacgatattg ataacgaagt tactgctcta 4681 ataacaagta gtttggcacc acaaaagaca cgcccaaagt caacgcctca cttcacagta 4741 tatccagtaa gacctacaac gcctatggga gatacgatca caacaacaat gcaggccgcc 4801 acagtaaccg atttcccacg aactccactg atcatgtgct ccagtttggc agtaattatt 4861 gccattgctg cagtcgtgtt ctttgttttc aaatgcagac aaaatccgcc aaactctgaa 4921 cactacacca tggctatgaa atctcaatca ggctatacag caattgctcc tgaactttca 4981 cctcccatga accatgaccg gagcaacgat tcatgtacac aaccattact tgcaaaacca 5041 cacatcaacg gaaacggtta tgaaccgctg aaaggcgcgg taatagccaa tggaaatgga 5101 gcaacggcca caatgatgag aaacggaaac gggaatgggg tggcaaagaa aaaggatttt 5161 aaagagtggt acgtataa //