Dbfetch
LOCUS NM_001270047 1487 bp mRNA linear INV 22-NOV-2023
DEFINITION Caenorhabditis elegans Inward rectifier potassium channel irk-1
(irk-2), partial mRNA.
ACCESSION NM_001270047
VERSION NM_001270047.4
DBLINK BioProject: PRJNA158
KEYWORDS RefSeq.
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 1487)
AUTHORS Sulson,J.E. and Waterston,R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282 (5396), 2012-2018 (1998)
PUBMED 9851916
REMARK Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE 2 (bases 1 to 1487)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1487)
AUTHORS WormBase.
CONSRTM WormBase Consortium
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE 4 (bases 1 to 1487)
AUTHORS Sulson,J.E. and Waterston,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
at Washington University, St. Louis, MO 63110, USA
COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This
record is derived from an annotated genomic sequence (NC_003284).
On Apr 15, 2020 this sequence version replaced NM_001270047.3.
COMPLETENESS: incomplete on the 5' end.
FEATURES Location/Qualifiers
source 1..1487
/organism="Caenorhabditis elegans"
/mol_type="mRNA"
/strain="Bristol N2"
/db_xref="taxon:6239"
/chromosome="X"
gene <1..1487
/gene="irk-2"
/locus_tag="CELE_M02A10.2"
/db_xref="GeneID:191695"
/db_xref="WormBase:WBGene00002150"
CDS 1..1386
/gene="irk-2"
/locus_tag="CELE_M02A10.2"
/standard_name="M02A10.2b"
/note="Confirmed by transcript evidence"
/codon_start=1
/product="Inward rectifier potassium channel irk-1"
/protein_id="NP_001256976.2"
/db_xref="EnsemblGenomes-Gn:WBGene00002150"
/db_xref="EnsemblGenomes-Tr:M02A10.2b"
/db_xref="GeneID:191695"
/db_xref="GOA:D3YT08"
/db_xref="InterPro:IPR013518"
/db_xref="InterPro:IPR014756"
/db_xref="InterPro:IPR016449"
/db_xref="InterPro:IPR040445"
/db_xref="InterPro:IPR041647"
/db_xref="UniProtKB/TrEMBL:D3YT08"
/db_xref="WormBase:WBGene00002150"
/translation="MLDIEEPLVKNKKYPFFKTPRLGGSRRIRNRLVQKQGLCNISLK
NVPKQRRKYFSDIFTTVIEMKWRWCLLYFSLSFMISWSFFATVYFLIAKQHGDIEQIA
NATWTPCIVNVHNELNAFLFSFTTQTTIGYGFRYPTDACPLTIVTMCFQFMWGVMTQT
LMAGIIFSKLARPIKRAATLIFSKNAVICLRDGKLCLLFRVGDMRKSSLAEAHVRLQM
IKRCVTYEGELLPFHQFDMDVGYDQGLDRVFVIWPITICHEIDERSPLWEIGADDLKS
AKFEIIAILEGVVESVGSTTQARTSYLPSEILWGHRFEKLVHYKKENGQYNIDFGKFH
NVYSVNTPTCSAAEIERLRSEGIFNESEYQMYPPSDNKLNLLDNDEMSPVRDSIDLNQ
IQILRRDSDEDPDAGEESMELVDLGIHHKCSIRSQSPIINSTSHLLQPMHKNSCSVRR
GSSTLNVSLHG"
ORIGIN
1 atgttggaca ttgaggagcc gttggttaaa aacaagaaat acccgttttt caaaacgccc
61 agacttggcg ggtcacgacg gatacgcaat cggttggtac agaagcaggg tctctgcaac
121 atcagtttga aaaatgtacc aaaacaaagg aggaaatatt tttctgacat tttcacgaca
181 gtcattgaaa tgaaatggag atggtgcttg ctgtactttt cattgtcttt catgatcagt
241 tggtcattct ttgcaacagt atacttcctt attgcaaaac agcatggaga tatcgaacag
301 attgcaaatg caacatggac accgtgtatt gtgaatgtgc acaatgagct caatgcgttt
361 ttattctcat tcacaactca aaccactatt ggttacgggt tcaggtaccc aacagacgca
421 tgtcctttga caattgtcac aatgtgcttc cagttcatgt ggggtgttat gactcagact
481 ttaatggctg gtattatctt ctccaagctg gcaagaccca tcaaacgtgc agcaactctg
541 atattctcca aaaatgcggt aatatgtctg cgagatggga aactgtgtct gttatttcga
601 gttggtgaca tgagaaagtc aagtttggcg gaagcgcatg ttcggttgca gatgatcaaa
661 cgatgtgtga cgtacgaagg ggaattgttg ccttttcatc agtttgacat ggatgtcggg
721 tatgatcaag ggcttgacag agtttttgtc atttggccaa tcacgatatg ccatgaaatt
781 gatgaaagga gcccgctttg ggagattgga gcagatgatt taaaaagcgc aaaatttgag
841 attattgcaa ttttggaagg agtggtggaa agcgtcggtt caactaccca agcacggaca
901 agctaccttc cgtcggaaat attatggggg cacaggtttg aaaaactggt gcactacaag
961 aaggaaaatg gccagtataa cattgacttt ggcaaatttc acaacgtgta ctctgtaaat
1021 accccgacat gctcagcagc ggaaattgaa aggcttaggt cagaagggat attcaacgag
1081 tcggagtacc aaatgtaccc accgtcagac aataagctca atcttcttga taatgatgaa
1141 atgtcaccgg ttcgcgactc gatagatctc aatcagatac aaattttgcg aagagacagt
1201 gatgaagacc ctgatgctgg agaggaaagt atggaattgg ttgaccttgg aattcaccac
1261 aagtgctcaa ttcgctctca atctcccatc atcaactcga cctctcacct tcttcagcca
1321 atgcacaaga actcttgttc cgttcgaaga ggctcatcaa ctctgaatgt cagtctacat
1381 ggataataat atcttcaatg ccctttcata catttctgtg attgttctat gcatttttgt
1441 tctttctctt tgtttctcaa catttgaatt gtaaataacg cgggttt
//