Dbfetch
LOCUS NM_001129519 3189 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Vinculin (hmp-1), mRNA. ACCESSION NM_001129519 VERSION NM_001129519.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3189) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3189) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3189) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3189) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Sep 4, 2019 this sequence version replaced NM_001129519.2. FEATURES Location/Qualifiers source 1..3189 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene 1..3189 /gene="hmp-1" /locus_tag="CELE_R13H4.4" /db_xref="GeneID:179624" /db_xref="WormBase:WBGene00001978" CDS 2..2794 /gene="hmp-1" /locus_tag="CELE_R13H4.4" /standard_name="R13H4.4b" /note="Confirmed by transcript evidence" /codon_start=1 /product="Vinculin" /protein_id="NP_001122991.1" /db_xref="EnsemblGenomes-Gn:WBGene00001978" /db_xref="EnsemblGenomes-Tr:R13H4.4b" /db_xref="GeneID:179624" /db_xref="GOA:A5JYX3" /db_xref="InterPro:IPR001033" /db_xref="InterPro:IPR006077" /db_xref="InterPro:IPR036723" /db_xref="UniProtKB/TrEMBL:A5JYX3" /db_xref="WormBase:WBGene00001978" /translation="MPANGNSHAYFNIDEVRSKNVLKQITQLINEVTNITETFPLKPG QTTEGLVATLDAAVANFLQTGSFAISKCPIANSDPRAIDLLHEALGAVQDTGQVMIQT GRDFVRDSTSTNKRAIATNSGRNLLTAVAKFLILADSIDVKVIVDKVDEVRETAHQMI EADTKIKVDDLYNLLISQIEELDITVRRRAIDLVKPNQRDDLLAARSALRQTAPLLYT STRTFVRHPEHEEARRNRDYTADEMHSALNALESVLNGQQPKVTFSEYGRIGDLINEI DTFQNRIEIDPAHYRRGTDRPDLEGHCERIVSGSASIADAESTRENRKQKIVAECNNL RQALQELLTEYEKSTGRRDDNDDIPLGIAEVHKRTKDLRRHLRRAIVDHISDAFLDTR TPLILLIEAAKEGHEENTRYRSKMFQEHANEIVSVARLSCQLSSDVESVSVIQHTAAQ LEKLAPQVAQAAILLCHQPTSKTAQENMETYKNAWFDKVRLLTTALDNITTLDDFLAV SEAHIVEDCERGIKGITANASTPDENAANCETVDCAAGSIRGRALRVCDVVDAEMDFL QNSEYTETVKQAVRILKTQRVDQFAERASALANRQEAHGLTWDPKTKEEEMNEFINAC TLVHDAVKDIRHALLMNRSMNDVDSDVEYEADGVGAANADANRTISEQENQQNLMRRL PEEEKKKIQAQIDIFKVTQTRFEREVAKWDETGNDIISLANNMCKIMMSMTEFTRGCG PLKTTMDVIRAAQEISLNGSKLNALARQIGEESADSQTKKDLLAYLSQITLYCQQLNI CSKVKADVTQVGNELVVSALDSAMSLIQTARNLLTAVVQTVKAAYIASTKFRRPNANS VRVEWRMAPPKKQPLIRPQKNNAIIRVCRRASERRPLQPAKVLAEFTRNEIETGRDSD DEELDRRHQQRINGRL" ORIGIN 1 aatgcctgcg aatggcaatt ctcatgcgta tttcaacatc gacgaagtgc gctcgaaaaa 61 tgttttgaaa caaattactc aattaatcaa tgaagtgacc aacatcactg aaacgtttcc 121 gttaaaacct ggacaaacta ctgaaggact tgtcgccact cttgatgctg ccgttgctaa 181 ttttcttcaa acgggaagct ttgcaatttc gaaatgccca attgcaaaca gtgatccacg 241 cgcaattgat ttattgcacg aagctcttgg agcagttcaa gatactgggc aagtgatgat 301 tcaaactgga agagattttg tcagagattc aacttcaaca aacaaacgag ctattgcaac 361 gaattctggt agaaatttgt tgactgctgt cgctaaattc ctaattcttg ccgactcgat 421 tgatgtaaaa gtgatagttg ataaagtaga tgaagttcga gaaactgcac accaaatgat 481 tgaagcggat acaaaaatca aagtagatga tttgtacaat cttctcattt ctcaaatcga 541 agaacttgat atcactgttc gacgacgagc cattgatttg gttaaaccaa atcagagaga 601 tgatcttcta gcagcaagat cagcacttcg acagactgca ccacttctgt atacttcaac 661 acgaacattt gtaagacatc cagaacatga agaagctcga agaaatcgtg attacactgc 721 agatgaaatg cattctgctt taaatgctct tgaatctgtt ttaaacggac aacaaccgaa 781 agtaacattt tctgaatatg gaagaatagg cgatcttatc aatgaaatcg atacttttca 841 aaatcgaatc gaaattgatc cagcccatta tcgtcgagga actgatcgtc cagatcttga 901 aggacattgt gaacgaattg ttagtggttc tgcttcaatt gccgatgctg aaagcactcg 961 tgaaaatcga aaacaaaaaa ttgttgctga atgcaataat ttgcggcaag ctcttcaaga 1021 acttttgacc gaatatgaaa aatctaccgg ccgaagagat gataatgatg atattcctct 1081 tggaatcgca gaagtacaca aaagaacaaa agatctccgg cgacaccttc gtcgtgcaat 1141 tgtagatcat ataagtgatg ctttcctgga tacccgtaca ccgcttattt tactgataga 1201 agctgctaaa gaaggccatg aagagaatac aagatatcgt tcaaagatgt tccaagagca 1261 tgcaaatgaa attgtttcag ttgctcgtct ttcttgtcaa ctttcatcag atgttgaaag 1321 tgttagtgtc attcagcata cggctgctca acttgaaaaa cttgctccac aagttgctca 1381 agctgccatc ttactttgcc atcaacctac ttcaaaaact gctcaagaga acatggaaac 1441 ctataaaaat gcttggtttg acaaagtgag attgttaacg actgctcttg acaatatcac 1501 tactttggac gactttttgg ctgtcagtga agcacatatt gttgaagact gtgagcgggg 1561 aatcaaaggt atcacggcaa acgcttcaac accggatgaa aatgcggcca actgtgaaac 1621 tgtcgactgt gctgccggat cgatacgtgg acgagctctc cgagtctgtg acgttgtcga 1681 tgctgaaatg gacttccttc agaactctga atacactgaa actgttaagc aagctgttcg 1741 gattttgaaa actcaacgtg tagatcaatt cgctgagcgt gcgagcgctt tagccaaccg 1801 tcaagaagca cacggactta catgggatcc aaaaacaaag gaagaagaaa tgaatgaatt 1861 tatcaatgct tgtacattag ttcacgatgc agttaaagac attcgacatg cacttttaat 1921 gaaccgaagt atgaatgatg ttgattcgga tgtagagtat gaagctgatg gtgttggtgc 1981 agcaaatgca gatgctaatc gtacgatatc cgaacaagaa aatcaacaga atctgatgag 2041 acgattgcca gaagaagaga aaaagaaaat tcaagcacaa attgatatct tcaaagtaac 2101 acaaacacga ttcgaaagag aagttgccaa gtgggatgaa acaggaaatg atattatatc 2161 attggccaat aatatgtgta agattatgat gagtatgaca gaattcacaa gaggttgtgg 2221 gccattgaaa acgacaatgg atgttatccg agcagcacaa gaaatctcac ttaatggatc 2281 aaaactaaat gcattggcac ggcagattgg agaagaaagt gctgattcgc agacgaaaaa 2341 ggatttgctc gcatatttgt cacaaatcac tctatattgt cagcaactga atatttgtag 2401 taaggtgaaa gctgatgtga ctcaagttgg aaatgagctt gtcgtatctg cacttgactc 2461 tgcaatgtct cttattcaaa cggctcgaaa tcttttaact gctgttgtac agactgttaa 2521 agctgcatac attgccagta ccaagttccg tcgtcctaat gccaacagtg tacgtgtcga 2581 gtggcgaatg gctccaccaa agaaacaacc actaattcga ccacaaaaga ataatgctat 2641 aatcagagtt tgcagacggg catccgaacg gcgacctttg caaccagcta aagtgctcgc 2701 cgagtttacg cgtaacgaga ttgagacggg tcgtgatagt gacgacgagg aacttgatcg 2761 ccggcatcaa caaagaataa acggtcgttt atagataatt tatttcagtt ttattcatgt 2821 atcttcatac ttttcccttc caaatctttc cacacatcct ttatatgccc gagtctttat 2881 tattttctca ttctttcaat tctcttcagc tagaaatttg tatctgtgta ttttttgtat 2941 tcatttctgt ttaatgctct aaattctatc agctcatcac cgccaccatt atcaccgcat 3001 ttttcatttt tctcccccat gaatatcata atccatactg ttgaaaatca ggtaacttta 3061 catctttaca atttattttc gcactatcaa cctcaccctt tcaacgattt tttctgtatg 3121 attctgattt ctaaactccc tgatctatgt gcacaagttt ttcaaattag atgaactcaa 3181 ttctttcct //