Dbfetch
LOCUS NM_001027491 5611 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Collagen alpha-1(IV) chain (emb-9), mRNA. ACCESSION NM_001027491 VERSION NM_001027491.7 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 5611) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 5611) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5611) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 5611) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On May 27, 2020 this sequence version replaced NM_001027491.6. FEATURES Location/Qualifiers source 1..5611 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..5611 /gene="emb-9" /locus_tag="CELE_K04H4.1" /db_xref="GeneID:176314" /db_xref="WormBase:WBGene00001263" CDS 50..5329 /gene="emb-9" /locus_tag="CELE_K04H4.1" /standard_name="K04H4.1a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Collagen alpha-1(IV) chain" /protein_id="NP_001022662.2" /db_xref="EnsemblGenomes-Gn:WBGene00001263" /db_xref="GeneID:176314" /db_xref="WormBase:WBGene00001263" /translation="MSRLSLLGLTAAVVLLSSFCQDRIHVDAAAACKGCAPPCVCPGT KGERGNPGFGGEPGHPGAPGQDGPEGAPGAPGMFGAEGDFGDMGSKGARGDRGLPGSP GHPGLQGLDGLPGLKGEEGIPGCNGTDGFPGMPGLAGPPGQSGQNGNPGRPGLSGPPG EGGVNSQGRKGVKGESGRSGVPGLPGNSGYPGLKGAKGDPGPYGLPGFPGVSGLKGRM GVRTSGVKGEKGLPGPPGPPGQPGSYPWASKPIEMEVLQGPVGPAGVKGEKGRDGPVG PPGMLGLDGPPGYPGLKGQKGDLGDAGQRGKRGKDGVPGNYGEKGSQGEQGLGGTPGY PGTKGGAGEPGYPGRPGFEGDCGPEGPLGEGTGEAGPHGAQGFDGVQGGKGLPGHDGL PGPVGPRGPVGAPGAPGQPGIDGMPGYTEKGDRGEDGYPGFAGEPGLPGEPGDCGYPG EDGLPGYDIQGPPGLDGQSGRDGFPGIPGDIGDPGYSGEKGFPGTGVNKVGPPGMTGL PGEPGMPGRIGVDGYPGPPGNNGERGEDCGYCPDGVPGNAGDPGFPGMNGYPGPPGPN GDHGDCGMPGAPGKPGSAGSDGLSGSPGLPGIPGYPGMKGEAGEIVGPMENPAGIPGL KGDHGLPGLPGRPGSDGLPGYPGGPGQNGFPGLQGEPGLAGIDGKRGRQGSLGIPGLQ GPPGDSFPGQPGTPGYKGERGADGLPGLPGAQGPRGIPAPLRIVNQVAGQPGVDGMPG LPGDRGADGLPGLPGPVGPDGYPGTPGERGMDGLPGFPGLHGEPGMRGQQGEVGFNGI DGDCGEPGLDGYPGAPGAPGAPGETGFGFPGQVGYPGPNGDAGAAGLPGPDGYPGRDG LPGTPGYPGEAGMNGQDGAPGQPGSRGESGLVGIDGKKGRDGTPGTRGQDGGPGYSGE AGAPGQNGMDGYPGAPGDQGYPGSPGQDGYPGPSGIPGEDGLVGFPGLRGEHGDNGLP GLEGECGEEGSRGLDGVPGYPGEHGTDGLPGLPGADGQPGFVGEAGEPGTPGYRGQPG EPGNLAYPGQPGDVGYPGPDGPPGLPGQDGLPGLNGERGDNGDSYPGNPGLSGQPGDA GYDGLDGVPGPPGYPGITGMPGLKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPG SPGQPGYPGQQGREGEKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQ LGTPGDVGYPGAPGENGDNGNQGRDGQPGLRGESGQPGQPGLPGRDGQPGPVGPPGDD GYPGAPGQDIYGPPGQAGQDGYPGLDGLPGAPGLNGEPGSPGQYGMPGLPGGPGESGL PGYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGYP GERGLPGVPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDGLDGLPGRPGREGLPG PMAMAVRNPPGQPGENGYPGEKGYPGLPGDNGLSGPPGKAGYPGAPGTDGYPGPPGLS GMPGHGGDQGFQGAAGRTGNPGLPGTPGYPGSPGGWAPSRGFTFAKHSQTTAVPQCPP GASQLWEGYSLLYVQGNGRASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYS FWLSTDEPMTPMMNPVTGTAIRPYISRCAVCEVPTQIIAVHSQDTSVPQCPQGWSGMW TGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYATNHGFWLSIV DQDKQFRKPMSQTLKAGGLKDRVSRCQVCLKNR" ORIGIN 1 aacgacacca atctttgggt aacgagaagt cgatcgccgt gactggaaga tgtcacgctt 61 atcgcttctc ggcttgacgg cagccgtagt gctactgtcg tcgttctgtc aagataggat 121 acatgtggat gctgccgccg catgcaaggg atgtgctcca ccatgtgttt gcccaggaac 181 caaaggagaa cgtggtaatc caggatttgg tggtgaacca ggacatcctg gagcaccagg 241 acaagatgga ccagaaggag caccaggagc tccaggaatg tttggagccg aaggagattt 301 tggagatatg ggatctaagg gagctcgtgg agatcgtggt cttcctggat cgccaggtca 361 tccaggtctt caaggacttg acggattacc aggactgaaa ggagaagaag gaattccagg 421 atgcaatgga acagatggtt tccctggaat gcccggactt gctggacctc cagggcaatc 481 tggacaaaac ggaaaccctg gacgaccagg actctccgga ccaccaggag aaggaggtgt 541 caattcacaa ggacgcaaag gagttaaagg agaatctgga agatcaggag ttccaggtct 601 tccaggaaac tctggttatc ctggattgaa aggagcaaag ggagatccag gaccgtacgg 661 tcttcccgga ttccccggag tttctggatt gaagggaaga atgggagtga gaacttctgg 721 tgttaaggga gagaagggtt tgcctggacc accaggacca ccaggacaac cgggatctta 781 tccatgggct tcaaagccaa ttgagatgga agtcttgcaa ggacctgtcg gaccagctgg 841 agtgaaagga gaaaagggac gtgatggacc agtaggacca ccaggaatgc tcggacttga 901 cggaccacca ggatatcctg gattaaaggg acagaaggga gatttgggag atgctggaca 961 acgtggtaaa cgtggaaagg acggagttcc aggaaattat ggagaaaagg gatcccaagg 1021 agaacaagga cttggaggaa ctccaggata cccaggaact aagggagggg ctggagaacc 1081 aggataccca ggaagaccag gtttcgaagg agactgtgga ccggaaggac cacttggaga 1141 aggaactggt gaggctggac cacatggagc tcaaggattc gacggagttc aaggaggcaa 1201 aggattgcca ggacatgatg gtctcccagg accagtaggt ccaagaggtc cagttggagc 1261 tccaggagcc ccaggacagc ccggtatcga tggaatgcca ggatacaccg aaaaaggaga 1321 tagaggagag gacggttacc caggattcgc tggcgaacca ggactcccag gagaaccagg 1381 agattgtggt tatccaggag aggatggtct tccaggatac gatattcaag gaccacctgg 1441 acttgacgga caatccggaa gagatggatt ccctggtatt ccaggagaca tcggagatcc 1501 aggttattct ggagaaaagg gattcccagg aactggagtt aacaaagttg gaccaccagg 1561 aatgaccggt ttgccaggag agccaggaat gccaggacgt attggagttg acggttatcc 1621 aggaccacca ggaaacaatg gagaaagagg agaagactgt ggatattgtc cagatggtgt 1681 tccaggaaat gctggagatc caggattccc cggaatgaat ggatatccag gaccaccagg 1741 acctaatggt gatcatggag actgcggaat gccaggagct ccaggaaagc caggatccgc 1801 tggatcagat ggactttcag gatcaccagg acttccagga attccaggct acccaggaat 1861 gaagggagaa gccggagaga tcgttggacc aatggaaaac ccagctggaa ttccaggtct 1921 taagggagat catggtcttc caggactacc aggacgacca ggaagtgacg gactccctgg 1981 ttacccagga ggaccaggac aaaatggatt cccaggactc caaggtgaac caggtcttgc 2041 tggaattgat gggaagagag gacgtcaagg atctctcgga atcccaggac ttcaaggacc 2101 acctggagac tctttcccag gacagccagg aacacctggt tacaagggag aacgaggtgc 2161 tgatggtctt ccaggacttc caggagctca aggaccacgg ggaattccag caccattgag 2221 aattgtcaat caagttgctg gacaaccagg tgttgacggc atgccaggtc ttccaggaga 2281 tagaggagct gatggtcttc caggactccc aggaccggtt ggaccagacg gatacccagg 2341 aacaccagga gagcgcggta tggatggtct tccaggattc ccaggactcc atggagagcc 2401 tggaatgcgt ggacagcaag gagaagttgg tttcaacgga attgatgggg actgtggaga 2461 gccaggtctt gacggatacc ccggagcacc aggagctcca ggagctccag gagagactgg 2521 atttggcttc ccaggacaag tcggataccc aggaccaaat ggagatgctg gggcagctgg 2581 acttccagga ccagacggct acccaggaag agacggtctt ccaggaactc ctggataccc 2641 aggagaagca ggaatgaacg gacaagatgg agccccagga cagccaggat ctcgtggaga 2701 gtctggactt gttggaattg atggaaagaa aggacgcgat ggaaccccag gaacacgtgg 2761 acaagacggt ggaccgggat attccggaga ggctggagcc ccaggacaaa atggaatgga 2821 tggataccca ggagcaccag gagatcaagg atatccagga tccccagggc aagacggata 2881 cccagggcca agtggaattc caggagagga cggtcttgtc ggattcccag gacttcgtgg 2941 tgaacacgga gacaatggtc ttccaggatt ggagggagaa tgcggagagg aaggatccag 3001 aggacttgat ggtgttccag gttacccagg agaacacgga accgacgggc taccagggct 3061 tccaggagct gatggtcaac caggttttgt tggagaagcc ggagagccag gtacaccagg 3121 atacagaggt cagccaggag aaccaggaaa cctcgcatat ccaggacagc caggagatgt 3181 tggataccca ggaccagatg gaccaccagg tcttccagga caagacggcc ttccaggact 3241 gaatggtgaa cgaggagaca atggagatag ttatccagga aacccaggat tgagcggcca 3301 accaggagat gctggatatg acggacttga tggagtccca ggaccaccag gatacccagg 3361 aatcactggg atgccagggc tcaagggaga atctggactt ccaggacttc caggacgtca 3421 aggaaatgac ggcattccag gtcaaccagg acttgaagga gaatgtggtg aagatgggtt 3481 cccaggatct ccagggcaac caggttatcc tgggcagcaa ggacgtgaag gagagaaggg 3541 atatccagga attccaggag aaaatggtct ccctggtctt cgtggacaag acggccagcc 3601 aggtctcaag ggagaaaatg gtttggatgg tcagccaggt tatccaggat ccgcaggaca 3661 attgggaact ccaggagacg ttggatatcc aggagcacct ggagaaaatg gagacaacgg 3721 aaatcaggga cgtgatggac aacctggact tcgtggagaa tcaggtcagc caggacagcc 3781 aggattgcca ggaagagatg gtcagccagg accagttgga ccaccaggag acgatggata 3841 cccaggagca cccggacaag acatatatgg cccaccaggt caagctggac aagatggcta 3901 cccaggactt gatggactcc caggagcccc aggacttaat ggagaaccag gatctccagg 3961 acaatacgga atgccaggtc ttccaggagg cccaggagaa tcaggactac caggatatcc 4021 aggagaacgt ggtcttcccg gactcgacgg aaagcgcggt catgatggac tcccaggagc 4081 accaggtgta ccaggagttg agggagttcc aggacttgaa ggagattgtg gagaagacgg 4141 ttatccagga gctccaggag ccccaggaag caacggatat ccaggagagc gtggtcttcc 4201 aggtgtccca ggacaacaag gacgatctgg tgacaacggt tatccaggag caccaggaca 4261 acctggaatc aagggaccac gtggagatga tggattccca ggacgcgacg gactcgacgg 4321 acttccaggt cgaccaggac gtgaaggatt gcccggacca atggctatgg cagttagaaa 4381 cccgccaggc caaccaggag aaaatggtta tccaggagag aagggatacc caggacttcc 4441 aggagataac ggactttccg gaccaccagg aaaagccgga tacccaggag ctccaggaac 4501 agacggctat ccaggaccac caggtctttc aggaatgcct ggacacggtg gagatcaagg 4561 attccaagga gctgctggac gtactggtaa tccaggactt ccaggtactc caggataccc 4621 aggatcacca ggaggatggg caccaagtcg aggattcact tttgccaagc actctcagac 4681 taccgcagta ccacagtgcc caccaggagc ttctcaactt tgggaaggat attctcttct 4741 ttacgttcaa ggaaacggtc gtgccagtgg acaagatctt ggtcaaccag gatcttgcct 4801 ctccaaattc aacacaatgc cattcatgtt ctgtaatatg aacagcgtct gccacgtttc 4861 cagccgtaac gattactcgt tctggttgtc aactgacgag ccaatgacac caatgatgaa 4921 tccagtcacc ggaacagcaa ttcgtccata catttctcgt tgtgccgtct gtgaagttcc 4981 aactcaaatc atcgcagttc actctcaaga cacatcagtt ccacaatgtc cacaaggatg 5041 gtcgggtatg tggaccggat attcctttgt catgcacact gccgctggag ccgaaggaac 5101 tggacaaagt cttcaatcgc ctggttcctg tctcgaagag ttccgtgccg ttccattcat 5161 tgagtgccac ggaagaggaa catgcaatta ttatgccacc aatcacggat tctggctttc 5221 catcgttgat caggacaagc aattccgtaa accaatgtca cagacactca aagctggagg 5281 acttaaagat cgtgtatcca gatgccaagt gtgtctcaag aaccgataat catcccaatc 5341 atcactcgct ttttactatt tatcaagttc tacttaaatc tttctttata ttttctctct 5401 attaaatatc aaccattttc tatgcttttt acaatgtttc ttcaacaaaa aatcttccat 5461 actaacaaaa ctgccaaaag agagcaagtt ctgtgtgata cgaattactc ctgccccctt 5521 tgaaaacaag attctgttat tttattgtat ttccctaatg ttcgtaatct gaaaataaaa 5581 atttatttga tttgaataaa atttttgaac t //