Dbfetch
LOCUS NM_001026478 4686 bp mRNA linear INV 21-JAN-2020 DEFINITION Caenorhabditis elegans Cadherin-related hmr-1 (hmr-1), mRNA. ACCESSION NM_001026478 VERSION NM_001026478.4 DBLINK BioProject: PRJNA158 BioSample: SAMEA3138177 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 4686) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 4686) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-JAN-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4686) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (04-DEC-2019) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 4686) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Sep 4, 2019 this sequence version replaced NM_001026478.3. FEATURES Location/Qualifiers source 1..4686 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene 1..4686 /gene="hmr-1" /locus_tag="CELE_W02B9.1" /db_xref="GeneID:173007" /db_xref="WormBase:WBGene00001980" CDS 266..4075 /gene="hmr-1" /locus_tag="CELE_W02B9.1" /standard_name="W02B9.1a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Cadherin-related hmr-1" /protein_id="NP_001021649.2" /db_xref="GeneID:173007" /db_xref="WormBase:WBGene00001980" /translation="MQKRRCTWHSSIATTTRHTFTEPQNTESERTCHVEQALDDTRQR IGMPETRQGRSSRGNCVIFGSSKRLWVTLLGFCFVLSTLIGGAEAFTDLSLPFGLEPS VAKSRFSSLVGGVRARDIHVFVMKNISEDTPVGTVLETFKAHDPSNPMYNFSFRINRQ SDPKRQFTIDQDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDVNDNG PEPYTVPRPCIFRENTPVNQLGTCEIRATDRDTAEFGPPFTMEVSPSFKYSQYLNVIF NANGDGGNGSMTITPLQEFDREAPVPGKILEIPLILADRAGRRNEASVHVIIGDLNDN TMHDGRMTIHVNSYLGRLKETVIGRVYVDDADDWDLGDKTFSWKDSRPGFELSDKGSI TMAGEMAAGTYTMSANVHDNARDEDAVGYVTVIVNAVPQIAFDNQGSVQLLIAEETPL QLPDDFIRADSNGQSLMDTFKQEMTAYMGGDVTVDVFSVQVGIATLQTRDVPVLNVRF NARGSTYRDTAQLNGLIAAHRADLQRKLNVEIVGVGIDMCKFTQCDAGCQTLNSADYD GIVVSANSTVIVGVNATSRDDCTCPVWRAPPACQHSLCHNDGVCHNTNPGFFCECRND GLKGARCQGTTRSFGGNGFAWYKPMPACTSLNISFSFMTTQSDALLFYNGPLETLRND THIEYSDYIFIQLRGGRISLEVSMNGQSRSSLEVASTALNDGTWHDISVNQEGKRVEL VVDNCRFLGAGADDSSCRAELYTPDDDERLNIVTPVQIGGLAPLSGQDYPQTIPRAGL NGCVRNLNVNGDQYDLATPAFEQNSEKGCRLWGATCDSNSVDSLNHCIHGDCFADVQG SGAMVAKCVCDPGWGGARCERRMEWIQFAQGAFIEYSPRIAFPEQVSDIELLFISGKV NGAPAELSFGTDSQQSYVSTNLESGQNGVTAAGKFDIGTGGRRARQELRVSEVLLKEN ASYWLQFTRNPTRASLSIDNAYTVSTQLDKGEPFSLQVNQITLGTQGQNKGFQGCIGT YRWSKQNLPLKRGGAMDENEESIVSISNMAGVQDGCDLRITCADLPAGYCGGSFVCVD FWKGPFCTCNDGANAILGDDGQVVGCGETLAVSKLGISSPAIILILVSLALLILLVMM MVVYTRRSPGAFENVRPEEMNRDNLRQYGVEGGGEADNDQYSMAGLRKPVMPLDTGMG PAIGGHPPHYPPRGMAPPKDDHELNSKIKDLETDQNAAPYDELRIYDDERDNISVVTL ESIESAQ" ORIGIN 1 tagaagttgc gtcaaacgcc acctagtcgg cctagccgca cactcactgc aacaacaccg 61 cgaatatcaa taaaaaagcc ttagtgtcat tccaacctta gaacttacta atcccaacaa 121 caaaaaaatc acaaaaaaaa tcaagaagaa ggtcccccct ctctctcttc atcatccaat 181 caaaatttct agccactgga ctacgaagac gtcacccaac gggacggttt tcatctcggg 241 atacgagttt ccgacggtcg acacgatgca gaagcggcgg tgcacgtggc actcgtcgat 301 cgcaacgacc acgcgccaca cattcacgga gccacagaac accgagtccg agaggacgtg 361 ccacgtggaa caagcattgg acgatacacg gcaacggatc gggatgccgg agacacggca 421 aggtaggagt agtaggggaa attgtgtgat ttttgggagt tctaagaggc tctgggtgac 481 acttttgggc ttttgcttcg ttctgagcac cttgattggc ggagcggaag cgtttacgga 541 cctttcgttg ccattcggac tggagccatc ggtcgccaag tcgcggtttt cgtcgcttgt 601 cggcggagtc cgtgcacggg acattcacgt ttttgtgatg aagaatatca gtgaggatac 661 gccggttgga acggttctcg agacttttaa ggctcacgat ccgagtaatc caatgtataa 721 tttctcattc cgaatcaatc gccaatcgga tccgaaacgt caattcacta ttgatcagga 781 tggaacactt cgtgttgctc acacacttga tcgagaggat attgccgttt ataatttgat 841 tatagaagcc tatgataatt ccaacaatat tgggcgtcaa atggttgccg tctaccttca 901 ggatgtgaat gataatggac ccgaaccgta taccgtaccg agaccatgta ttttccgcga 961 aaatactcct gtaaatcaac tcggaacttg tgaaattcgc gccacggata gagatactgc 1021 tgaatttgga cccccattca cgatggaagt atcgcccagc ttcaaatata gtcaatattt 1081 gaatgttata ttcaatgcga acggagacgg tggaaatgga tcaatgacca ttacaccact 1141 tcaagaattt gaccgtgaag ccccagttcc tggaaaaatt ttggaaattc cattgatttt 1201 ggcggatcgt gccggccgac gtaacgaggc ttcggttcat gtgattattg gagatttgaa 1261 tgacaataca atgcacgatg gtcgtatgac aatccatgtg aattcctacc tgggacgcct 1321 gaaagagact gtaatcggac gtgtctatgt tgatgatgca gacgattggg atcttggaga 1381 caagacgttc tcttggaagg atagccgccc cggcttcgag ctctctgaca agggatccat 1441 cacgatggct ggtgaaatgg ctgctggtac ctatacgatg tctgcgaatg ttcatgataa 1501 cgctcgtgac gaggacgctg tcggttatgt gactgtgatt gtgaatgcgg tgccacaaat 1561 tgcgtttgac aatcagggaa gtgttcagtt gttgattgcc gaggagacac cgctccagtt 1621 gccggatgac tttattcgtg ccgattcgaa tggacaatca ttgatggata cgttcaaaca 1681 ggagatgacg gcgtatatgg gtggagatgt tacagttgat gtgttctccg ttcaggtcgg 1741 aatcgctacc ctccagaccc gagatgttcc agtcttgaat gtccgtttca acgctcgtgg 1801 ctctacttat cgtgatacag ctcaactgaa tggactcatc gcagctcacc gagcagatct 1861 tcaacgaaag cttaacgtcg aaattgttgg agtcggaatt gatatgtgca agtttacaca 1921 gtgtgatgcc ggatgtcaga ctctcaactc tgctgactat gatggaattg ttgtatcagc 1981 caattcaaca gtgattgtcg gagtcaatgc aacatcacgt gatgattgta catgccccgt 2041 gtggagagct ccaccggctt gtcagcattc cctttgtcat aatgatggtg tgtgtcataa 2101 tacgaatcct ggattctttt gtgaatgccg taatgatgga ttgaagggag cacgatgcca 2161 gggaacaact agaagctttg gtggaaacgg atttgcgtgg tataagccga tgccggcttg 2221 tacgagcctg aacatctcgt ttagctttat gacgactcaa tccgatgctc ttctattcta 2281 caatggacca ctggaaactc ttcgaaatga tactcatatc gaatattccg attacatttt 2341 cattcaactt cgcggcggcc gtatctcact ggaagtttca atgaatggac aatcgagaag 2401 ctcgctggaa gtggcttcta ccgccttaaa cgatggaact tggcatgata tttctgtgaa 2461 tcaggaggga aaacgcgtcg aactcgtcgt tgataattgc cgattcttgg gcgccggcgc 2521 cgatgattct tcgtgtagag ccgagttgta tacacctgac gatgatgaac gtttgaatat 2581 tgtgacacct gtacagattg gtggattggc tccgctatcc ggtcaagact atccacagac 2641 aattccacgg gccggactaa atggatgcgt ccgcaatttg aatgttaacg gagatcagta 2701 cgatctggcg acacccgctt tcgagcaaaa ctctgaaaag ggttgtaggc tgtggggagc 2761 cacgtgtgac agtaactcag tcgactcgtt gaatcattgc attcatggag actgttttgc 2821 ggatgttcag ggttcgggtg cgatggttgc caagtgtgtt tgtgatccgg gatggggtgg 2881 agcacgatgt gaacgacgaa tggaatggat tcaattcgca cagggagctt ttattgagta 2941 ctctccacgc attgcattcc cggaacaagt atccgacatt gagcttctct tcatttctgg 3001 aaaagtgaat ggagcaccgg cggagctctc gttcggaaca gactcccaac agagttacgt 3061 ttcaacgaat ttggaatccg gtcaaaatgg agtcactgcc gccggaaaat tcgatatcgg 3121 aaccggagga cgacgtgctc gacaggaact tcgtgtgtcg gaggtgttgc tcaaggagaa 3181 tgcgagttat tggctccaat tcacgaggaa tccgactcgg gcgagcttgt cgatcgataa 3241 tgcgtatacg gtatctacgc agttggataa gggagaacca ttctcgttgc aagttaatca 3301 gattacactt ggcacacagg gacagaataa gggattccag ggatgcatcg gaacgtatcg 3361 ttggtcgaaa cagaatctcc cactgaaacg cggcggagca atggacgaga acgaagaatc 3421 gattgtctca atttccaaca tggccggagt ccaagacggt tgtgatcttc gaatcacttg 3481 tgccgacctt ccagccggtt actgtggtgg atcgttcgtc tgtgtcgatt tctggaaggg 3541 tccattctgt acgtgcaatg atggagccaa cgcgattctc ggtgatgatg gacaagttgt 3601 cggttgtgga gagacgttgg ccgtgtcgaa actcggaatt agctcaccgg cgattattct 3661 gattcttgtc tcgttggcgt tgcttatact gttggttatg atgatggttg tgtatacgag 3721 acgatcgcct ggtgcatttg aaaatgttcg gccggaggag atgaatcgtg ataatttgcg 3781 gcagtatggt gtggaaggag gtggcgaggc ggataacgat cagtactcaa tggccggcct 3841 acgtaaacca gtaatgccac tcgacacagg aatgggacca gcaatcggag gacacccacc 3901 acactaccca ccacgtggaa tggcgccacc aaaagatgat catgagctga actcgaagat 3961 caaggatctt gagactgatc agaatgcggc accgtacgat gaacttcgga tctacgacga 4021 tgagcgggac aatatttctg tcgtcacgtt ggagagtatc gaaagtgccc aataaacgac 4081 ggactatatt atcatctctt tttttctgat cttttttcgc gctaattttt cacaattccc 4141 tttctctccc caccatctca atattccctg cgatactcgt caaccggtgt caaatcacac 4201 acacacaaaa atctgcactt tttgactcct atctgttacc tagaacgggt tctgttttct 4261 tgttataggg ccctttttac cccaaaattg tacacatttt ttatgcaaga ttatgcaaga 4321 ttttctaact ttttttccaa tttttttcta tcctataaca atcccagaat tgctttcgaa 4381 attcattaca cacacacact gctcatcttt tttcaattct tacataatca caagtacctc 4441 tactactact tttttgagcg aaatttcact tatatatatg tctatttata tgtatttcct 4501 gttacccgtt tccctcttgc cacccccaca ttttgtttct ttttctactt ttttttgctg 4561 aacatctact ttttctgaac gggattctta tatcactcca atcttttttc caatttttca 4621 cgaccttttt ttcatgatga tgataatcaa ttttgaattg atttttgcaa tgaagtttaa 4681 cttttt //