Dbfetch
LOCUS NM_001025837 6001 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Bromo domain-containing protein (pbrm-1), mRNA. ACCESSION NM_001025837 VERSION NM_001025837.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 6001) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 6001) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6001) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 6001) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Sep 4, 2019 this sequence version replaced NM_001025837.3. FEATURES Location/Qualifiers source 1..6001 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene 1..6001 /gene="pbrm-1" /locus_tag="CELE_C26C6.1" /db_xref="GeneID:172504" /db_xref="WormBase:WBGene00007042" CDS 6..5657 /gene="pbrm-1" /locus_tag="CELE_C26C6.1" /standard_name="C26C6.1a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Bromo domain-containing protein" /protein_id="NP_001021008.1" /db_xref="EnsemblGenomes-Gn:WBGene00007042" /db_xref="EnsemblGenomes-Tr:C26C6.1a" /db_xref="GeneID:172504" /db_xref="GOA:G5EEY5" /db_xref="InterPro:IPR001025" /db_xref="InterPro:IPR001487" /db_xref="InterPro:IPR009071" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR027180" /db_xref="InterPro:IPR036427" /db_xref="InterPro:IPR036910" /db_xref="InterPro:IPR037382" /db_xref="InterPro:IPR037968" /db_xref="UniProtKB/TrEMBL:G5EEY5" /db_xref="WormBase:WBGene00007042" /translation="MSTKRKRAAEPDPEKDVASTSTASKKRKGRMTIAEKEKREFEMA KGNYVMAQIRKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQHKLKIPE YLTYDQFNDDFMMFIKNNLTYYKDESEEHKDMMKIQELFEAATAKVKSGEYLDDAEDE EGDEDVEETVQEEEEPEESGTSSRDSTPMDLDHFMLCDLLGAVLEATDNTGRLLCPPF RVLQSREDFPLYYEKIAKPIDLKTIAQNGVNKKYSTMKELKDDLFLLFKNAQQFSGNG SDIFKDAEQLKTVVKEKIARLEEKGVHPMRRAKATRLVDALLTAVAVNENFSEDSEED EETETNSEPMWKLYWTIRNAVHEKDRNVTLADNFLELPSKESYPDYYDEIKNPVSIFM INKRLKNGKYDLKSLVADLMQMYSNAFDYNLESSEVYISAEKLKALTISTCKQLVPSF DVSQYEPAPAQLTPVKPKATPHRARIKIEMPDTDSEDSRTPPPTHKRKSPKKPRENGS VPTPTFKGRKSTIPVDPNAAYMKQKAMMQGLWNVIHSYRVASNPGHWPAGAFIQLPSA KQYPEYYQIIQNPIDMKTIRMRIDGHQYPQVDAMINDCRVMFSNARDFNEPRSMIHMD AIQLEKAVLRAYEGMRNTSLGSSIPSTPHSSSSNLMKAMKLKTPKSEVRGRGKKNFSG SDDEESARINIQQHQRSMEDAIMQLPIEEQKMWRLFKSMKDVREEGTNRPLAVNFMRL PSKEEFPAYYDVIKKPMDMMRIKHKLENRQYVTLLDVVSDFMLMLSNACKFNETDSDI YKEAVSLQKALLEMKRELDTGDDAPRVQVELRTIFTSIFASLFSKKDEEGKCYSDHLT EFTEVLKANGVPSSEWPFTLDQIKMNIDKCRYRRLDKLQKDFFDLFERARELSKAGSS MYEAACTLQKSFIVERDTRCKDLIHSNAYCVIEKDIDEAIEKERSLKAKEEHDEEGGN KPAMVKRHESEVEMEDIEIDGTKYVAPCYAYVSRSDEKKTPLHIFRIERTFKDENGEK ALQGHWVYRPEETLHLASRKFMKQEVFLTPFRDTVLAERLRGRCVVISLSTYTSKVIT EYSEEDVYLCEYKYHGKPKYFAKLRTWPFTAEDEELEYTKRTKLMTPKRNLTAVDSDG NEGKDDVIVDGEEEEDEEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFF WLGQCVLVFNNMKPLCDVMKINKIWREKDGSEWFSGCWFARPSETIHDEGRLFFKNEV IAVYRNDETRKLCEIQRVCDVMPAKLYIKQRQTEVSECDVFVCETMVNGSADTPDDCS LFGFQSIVDEFSDAQTMNLDYGKAMRKMKAHKLHVSIPNEEVLFYKQPIKMDKELSPL LKGEGVMPLDHLDEMMDDDTDGSESVSSSIHPKILKEGSPPATVQSQTSSVSTPPQHP SISAEMPIMTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQ KKHYEMRAEVVAVEKAKQDAIKASQAMTLLPGQVRIYQCKWAACDSQYDTESALLEHV IQHHTSQIIMDSDQQFVCMWMTCLRNRKDGKPFPSLPRLHRHIKEKHMPTAAKNIYSN QLGKNFFKSIPNQGDTPGCRIVSAPYGQLPTAPSNGGIPPQQQHQQQQHHGNGMNGNM QQGAPQVINRHPVSQQMHHQHPQHMQQHHDHHPHQQHYQQGGQPHPQMQMGPPQNGMF QQGSSSSQQYHQAPPQQMIQQQHQQPGPPPQQQQPQMQPIVVTDVGRTVVRAVVPAFV APPNQIHSRRVLHSEAYLKYIESLAQNRQKSVSRWERTLGATARNTQPAGNARAPSHW IRRIENGRPVAREEDVTKALWKLRDELLKSTCSLVMDRPTQ" ORIGIN 1 actcaatgag tacgaaaaga aagcgtgctg ccgagcccga cccggaaaag gatgttgctt 61 ccacttctac cgcttccaag aagcggaaag gacgaatgac aattgcggaa aaggaaaagc 121 gagagtttga gatggcgaag ggtaattatg tgatggcaca gattcgaaaa catcgaagtt 181 ccgccggcaa taattctgta ttcgagagtt ttctccgatt accgccacgc cgcttcgagc 241 ctgaatatta tgagcaagta aaagagccga ttgatgttac cacaatccaa cataaactga 301 aaattcccga atatttgacg tatgatcagt ttaatgatga tttcatgatg ttcattaaaa 361 acaacctcac ttactacaaa gacgaatctg aagaacacaa ggatatgatg aaaattcaag 421 aacttttcga ggctgctacc gctaaggtga aatctggaga atatctagat gacgcagagg 481 acgaagaggg agacgaagat gtggaagaga cagttcagga agaggaagaa cctgaagaga 541 gtggaacatc atctcgtgat tcgacaccta tggacctgga tcacttcatg ctttgtgatc 601 ttttgggagc ggttcttgaa gcgactgata acaccggaag gcttctttgc ccaccattcc 661 gagttcttca aagtcgagaa gatttcccat tgtactatga gaaaatagct aaaccaattg 721 atctcaaaac gattgctcaa aacggagtga acaagaagta ttccacaatg aaagaactca 781 aagatgatct attcctgctc ttcaaaaatg cacagcagtt tagtggaaac ggtagtgata 841 ttttcaaaga tgctgaacaa ttgaaaactg ttgtgaaaga aaagattgct cgattggaag 901 agaagggagt tcatccaatg agaagagcca aagccacacg actcgttgat gctttgttaa 961 ccgctgttgc agttaatgaa aacttctcag aagattcaga agaggacgaa gaaactgaaa 1021 caaattcgga gcctatgtgg aagttgtatt ggacaatcag aaatgctgtt cacgagaaag 1081 atcgaaatgt tacgctggct gacaactttt tggaacttcc aagcaaagaa tcttaccccg 1141 actactatga tgagatcaaa aaccctgtgt caattttcat gataaataaa agattgaaaa 1201 atgggaaata tgatttgaaa tctctcgtcg ctgatctcat gcaaatgtat tcaaatgctt 1261 tcgactacaa tcttgaatca tcagaagtct acatttctgc ggaaaagctg aaggcactaa 1321 cgatatccac gtgcaagcaa cttgttcctt cattcgatgt ttctcaatac gaacctgctc 1381 cggcacaact tacaccagtg aaaccaaaag cgacaccaca cagagctcga attaagattg 1441 agatgccgga cacagactcg gaagatagta ggactccacc tcctactcat aaaaggaaat 1501 ctccgaaaaa acctcgtgaa aatggaagtg ttcctactcc aacttttaaa ggcagaaaat 1561 cgacgatccc tgtcgatcca aatgctgctt atatgaagca aaaagcaatg atgcaagggc 1621 tttggaacgt tatccattcc tacagagtcg cttcgaatcc gggacattgg ccagcgggag 1681 cattcataca attgccatct gccaaacaat atccagaata ctatcaaatt attcaaaatc 1741 cgattgatat gaaaacgatt cggatgagaa tagatggaca tcagtatcca caggttgatg 1801 caatgatcaa cgattgtcga gtgatgtttt cgaatgctag agatttcaat gaaccccgtt 1861 caatgataca catggatgct attcaactag agaaagcagt tttgcgagct tatgaaggaa 1921 tgagaaacac gtcactgggc tcttcaatac cgtcaactcc tcattcgtca tcgtcaaatc 1981 ttatgaaagc aatgaaacta aaaactccga aatccgaggt ccgtggtcgc ggtaaaaaga 2041 actttagtgg atctgatgat gaggaatcag ctcgaattaa catacaacaa catcaaagaa 2101 gcatggagga tgctataatg cagcttccaa tcgaagagca aaaaatgtgg agattgttca 2161 aatctatgaa agatgttcgt gaggaaggaa ccaaccgtcc attggctgta aacttcatgc 2221 gtcttccatc aaaggaggaa tttcctgcat attatgacgt cattaaaaag ccgatggata 2281 tgatgaggat caagcataag ctggagaatc gtcagtatgt aacactgctt gatgtggttt 2341 ctgatttcat gctaatgctt tctaatgcct gcaaattcaa tgagactgat tctgacatct 2401 acaaggaagc agtttctctt cagaaggcac ttttggaaat gaagcgagag cttgataccg 2461 gagatgatgc accaagagtt caggttgaat tgagaaccat atttacttca atatttgcct 2521 cgctgttcag taagaaagat gaagaaggaa aatgttattc ggatcattta actgaattta 2581 cggaagttct caaagcgaat ggagtacctt catctgaatg gccattcact cttgatcaaa 2641 ttaagatgaa tatagataaa tgccgttaca gacgactcga taagcttcaa aaggactttt 2701 tcgatctgtt cgaaagagca agagaactct caaaagcagg ctcttcaatg tacgaagcag 2761 catgtacact tcaaaaatca tttattgttg aacgtgatac acgatgcaaa gatttgatac 2821 actcaaatgc gtactgtgta attgaaaaag atattgatga agctattgaa aaggaaagaa 2881 gcttgaaggc aaaagaagaa catgatgagg agggaggaaa caaaccggcg atggtgaaaa 2941 gacatgaaag cgaagtcgaa atggaagata ttgaaatcga tggaacgaaa tatgtggcac 3001 catgttacgc atacgtttcc cgatctgacg agaagaaaac tcctcttcac attttccgaa 3061 ttgaacgaac ttttaaagac gagaatgggg aaaaagctct tcaaggacat tgggtttacc 3121 gtcctgaaga aactcttcat ttggcaagcc gaaagttcat gaaacaagaa gtttttctta 3181 cgcctttccg agatacagta cttgctgaac gtctacgagg acgatgtgtc gtcatttcac 3241 tttccacgta cacttcaaaa gtaatcaccg agtacagtga agaagatgta tatctctgtg 3301 agtacaagta tcatggaaaa ccaaaatact ttgctaagct gagaacctgg ccattcactg 3361 ctgaagacga ggaattggag tatacaaaga gaacaaaact aatgactcct aaacggaatt 3421 tgacagcagt tgattctgat ggaaacgaag gaaaagacga tgtaattgtt gatggagaag 3481 aagaagaaga tgaagaagat cgtgctcgtc ttgaagtatc attggatatg gaaagatttg 3541 agttggaagc gtcaaaagat gaagaatctg gaaaaacata cttccaacaa atccgttctg 3601 aaactggaaa gtttttctgg ctcggacaat gtgttctggt gtttaacaat atgaagccgt 3661 tgtgtgatgt gatgaagatt aataagattt ggagagaaaa agacggttct gagtggtttt 3721 ccggctgctg gtttgctcgt ccatctgaaa caattcacga cgagggacga cttttcttca 3781 agaatgaggt tattgcggtg tatcgaaacg acgaaactcg taaattgtgc gagattcaga 3841 gagtttgtga cgttatgcct gctaagctgt atataaaaca gcgacagact gaagtatcgg 3901 aatgtgatgt ttttgtttgt gaaacaatgg tcaacggatc agcagataca cctgacgatt 3961 gttctttgtt tggttttcag agtattgtcg atgagttcag tgatgctcaa acaatgaatc 4021 tcgattatgg aaaggcaatg cgtaagatga aggctcacaa acttcacgtt tcaatcccga 4081 atgaagaagt gctgttttac aaacaaccaa taaaaatgga caaagaactc tcaccactat 4141 tgaaaggcga aggcgttatg ccactggatc atctggacga aatgatggac gacgatacgg 4201 atggaagtga atcggtgtca agcagtattc atccgaagat cctgaaagaa ggatcacccc 4261 cagctacagt tcaatcgcag acttcttcag tttcaacacc tccacaacat cccagtatat 4321 cagcagaaat gcctattatg acaccaaaag cagttaagag caagagtgga tacattttgt 4381 tctctgctga agttcgtaag aggataatgc atgaaaatcc agacgcagga ttcggtgaag 4441 tttccaagat agttggtatt gagtggaaaa aattgtcgga agaacaaaag aagcattacg 4501 agatgcgtgc ggaagtcgtc gctgttgaga aagccaaaca ggatgccatt aaagcatcgc 4561 aagcgatgac ccttttgccc ggacaagtga ggatatatca gtgtaaatgg gctgcttgtg 4621 attcacaata tgataccgaa tcggcccttc tggagcatgt tatccaacat catactagtc 4681 aaattattat ggacagtgac cagcaattcg tatgtatgtg gatgacgtgt ctacgtaatc 4741 gaaaagacgg aaaaccattc ccatcgcttc ctcgacttca ccgtcacatt aaagaaaaac 4801 atatgcctac ggcggcgaaa aacatttact ccaaccagct aggcaagaat ttttttaagt 4861 cgataccaaa tcaaggagac actcctggat gccgtatagt atctgcgcct tacggacaat 4921 taccaactgc accatcaaat ggtggaattc cccctcaaca acaacatcaa caacagcagc 4981 atcatggaaa tggaatgaac ggaaatatgc aacaaggcgc tccacaagtt ataaacaggc 5041 atcctgttag ccaacaaatg catcatcagc atccacagca tatgcagcaa catcacgatc 5101 atcatccaca tcagcagcat tatcagcaag gtggccaacc tcatccacag atgcaaatgg 5161 gaccaccaca aaacggaatg ttccaacaag gatcttcttc atctcaacaa tatcatcagg 5221 caccacctca acaaatgatt caacaacaac atcaacaacc tggtccacct ccacaacagc 5281 aacaaccaca aatgcaacct atcgtggtta cagatgttgg acgaactgta gttcgagcag 5341 ttgtacctgc atttgttgca ccaccgaatc aaattcattc gagaagagtt ctacattcgg 5401 aagcatatct caagtatatc gaatcacttg cccagaatcg acagaagtcg gtaagccgat 5461 gggaacgaac tctaggagca actgccagga atacccaacc agctggaaat gcccgcgctc 5521 catctcattg gataaggaga attgaaaacg gacgacctgt agctcgcgaa gaggatgtta 5581 caaaagcttt gtggaaactt cgcgatgaat tgttgaagag tacgtgtagt cttgtaatgg 5641 accgaccaac tcaatgaaat cagtggatct cttgttaaaa ttttatgcaa tttttataac 5701 tttatcataa ttatcctacc ctatctcgcc tccccgttca atccagaaaa caagaatctc 5761 tttttctttt aatgtatttt ctgataacca gttatgtgtg ctccttctgt ttttatcctc 5821 tcatgattcc cacgaatacc ttaaatccta tttattttca ataatttatt cgtttcttga 5881 ttgtatttct tactacccac ttcagtcact aaatttatta tcatttccaa ttcacctttt 5941 tttaaaatat ttttattaat gggtcgggta tgaaacaaat tcaaacgata aatcaaacat 6001 c //