Dbfetch
LOCUS XM_015198997 8404 bp mRNA linear INV 24-AUG-2021 DEFINITION PREDICTED: Drosophila yakuba E3 ubiquitin-protein ligase Ufd4 (LOC6528001), mRNA. ACCESSION XM_015198997 VERSION XM_015198997.3 DBLINK BioProject: PRJNA695779 KEYWORDS RefSeq. SOURCE Drosophila yakuba ORGANISM Drosophila yakuba Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052527.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 24, 2021 this sequence version replaced XM_015198997.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila yakuba Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8404 /organism="Drosophila yakuba" /mol_type="mRNA" /strain="Tai18E2" /isolation_source="600 pooled females from a lab stock" /db_xref="taxon:7245" /chromosome="2L" /sex="female" /tissue_type="whole fly" /country="Cote d'Ivoire" /collection_date="1983" gene 1..8404 /gene="LOC6528001" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns" /db_xref="GeneID:6528001" CDS 170..8347 /gene="LOC6528001" /codon_start=1 /product="E3 ubiquitin-protein ligase Ufd4" /protein_id="XP_015054483.1" /db_xref="GeneID:6528001" /translation="MGDVDPETLLEWLSMGQGDERDMQLIALEQLCMLLLMSDNVDRC FESCPPRTFLPALCKIFLDELAPENVLEVTARAITYYLDVSAECTRRIVSIDGAIKAI CNHLVVADLSSRTSRDLAEQCIKVLELICTREAGAVFEGGGLNCVLSFIRDCGSQVHK DTLHSAMSVVSRLCTKVEPNTPCIQNCVESLSTLLQHEDSMVSDGALKCFASVADRFT RKWVDPAPLAEYGLTTELLKRLKSVGGNNHSSLSAAGTQPTSSSQPVATTNSDAINEN VAGTATISNSTKVKSSDAAASPQSISTTISLLSTLCRGSPSITHDILRSQLADALERA LQGDERCVLDCMRFADLLLLLLFEGRQALNRGSNNPNQGQLAPRPRRNNTNTDRTHRQ LIDCIRSKDSEALREAIESGGIDVNCMDDVGQTLLNWASAFGTLEMVEYLCEKGADVN KGQRSSSLHYAACFGRPAIAKILLKFGAYPDLRDEDGKTPLDKARERLDDGHREVAAI LQSPGEWMSPDHSLLNKDGKKYTLMEPRGDPEMAPIYLKVLLPIFCRTFLGSMLGSVR RASLALIKKIVQYAYPTVLQSLSETSFSEDAASTSEQNGGNLLIEVVASVLDNEDDDE GHLIVLNIIEEIMCKTQEEFLDHFARLGVFAKVQALMDNDAEELYVQLPGSSEEPAPT QRSSTSMAVTPRSTSDDPMEDAKEILQGKPYHWREWSICRGRDCLYVWSDSVALELSN GSNGWFRFIIDGKLATMYSSGSPENGNDSSENRGEFLEKLMRARSCVIAGVVSQPILP TASALRLVVGNWVLQSQKTNQLQIHNTEGHQVTVLQDDLPGFIFESNRGTKHTFSAET VLGPDFASGWSTAKKKRNKSKTEGQKFQVRNLSREIYNKYFKSAQTIPRGAVAILTDI VKQIELSFEEQHMAPNGNWETTLSDALMKLSQLIHEDGVVSAYEMHSSGLVQALVAVL SVNHWETNSPRCKRNKMQKQRVSVFKKCILEDNVESATNKPRTKSTASILIQKLVSVL ESTEKLPVYLYDTPCTGYSLQILQKRLRFRLERAECESTLFDRSGRTLKMEPLATIGQ LSKYLLKMVAKQWYDLDRSTYFYLKKIREHRTGTVFTHSFDFDEEGLLFYIGSNAKTC DWVNPAQYGLVQVTSSEGKTLPYGKLEDILSRDSISLNCHTKDNKKAWFAIDLGVYII PTAYTLRHARGYGRSALRNWLLQGSKDGLTWTTLSTHVDDKSLVEPGSTATWPITCAT DDSVRYRHIRIQQNGRNASGQTHYLSLSGFEIYGRVVGVADDIGKSVKEAEAKIRRER RQIRAQLKHMTTGARVIRGVDWRWEEQDGCAEGTITGEIHNGWIDVKWDHGVRNSYRM GAEGKYDLKLADCEFLSTFDGNQSIGTASAAPKASEKGNTLTSRKSSSTPSLPEATEK NQNTEGASNQTVSADNLAWKQAVETIAENVFASAKTQIISNQLAMNTSSSREARAKHK ESGTNQVHKDNISGPSPLSRELEHISDLSAINNSMPAINSSIVSDLATISENLSLTEL SKENICSVLTPSYKPAESVTASQSSSHPDVQSSSPRENDIKNISNIEENNKMNANNSV NKISKDLLANLRTSNIAGCPPVTQLSTEALEMIDKMRDGVDMIRNNSNNILSTDTFPV PCTNVPVGVKKTPKAQALINPDNANQKQIIVTTEEFPTKSSKKPSVTLKPGQQPNAVL SIVDIKDPQIATENVSVPSQMSISVPNLTTTSASEVPSTSEVATHTGLLETFAAIARR RTSQGTNIQDNQIMNAESNVNEHGDQNASGSFLGHSVTSLVKLALSSNFHSGLLSTAQ SYPSLSSNNSENIAPSNPTNTSAGQQSASTINHTLTMSLTSTSSDSEQVSLEDFLESC RAPALLGDLDDEDDMDEDNDEEENEDEYEEVGNTLLQVMVSRNLLTFMDDEAMENRLV GVTKRKSWDDEFVLKRQFSALIPAFDPRPGRTNVNQTSDLEISPLGVELPKPQQSGPE TIEQPLLGLKLRGPGIGGIPEVEIDLSNTDWTIFRAVQELLQCSQLNKMDKFRKIWEP TYTIVYREVSPEAQETTCLDPEEFPQTPDVSSKSGASTLSPNSPMHIGFNVADNNLCS VDDVLELLTQINGLNQSEIDSDVKEHGVSVLSEDLFISKKITNKLQQQIQDPLVLASN ALPNWCENLNQSCPFLFPFETRQLYFNCTSFGASRSIVCLQSQRDVTVERQRIPIMSP RRDDHEFRIGRLKHERVKVPRNEDLLMWAMQVMKTHCNRKSVLEVEFLDEEGTGLGPT LEFYALVAAEIQRSDLCMWLSDDELGEDTESSPLSAEGNSKPVGYYVNRREHGIFPAP LPQNTEICEKVLKYFWFFGVFVAKVLQDMRLVDIPLSTSFLQLLCHNKVLSRNLQKVI SDRRNGDLSVVSEESDIVETCTKLLRTDSNKSNAFGGILSLENLKEIDPTRYQFLQEM QNLLMRKQSIEFDETISAEKKQELINELKLHTQNGLEVSLEDLALTFTYLPSSSIYGY TQAELLPNGSSVNVTIDNLEAYCELLMNFILQDGIAQQMKAFSDGFNEVFPLKKLAAF TPSEARMMICGEQFPHWSREDIISYTEPKLGYNKDSPGFQRFVNVLLSMSGDERKAFL QFTTGCSSLPPGGLANLHPRLTVVRKVDAGVGSYPSVNTCVHYLKLPDYPTEEIMKER LLTATKEKGFHLN" polyA_site 8404 /gene="LOC6528001" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taatcaattt tcgagctgcg ctgctggata tttgtgtgaa taaaaatagt gttgtgtatt 61 gagtaattat taataagcag ccttaaaaaa tattgcaagc actagcaaaa tattcaatat 121 aatgcaaaca agttttggta tagaagcata aatcaaattt cgatttgcga tgggcgatgt 181 cgaccccgag acgctgctgg aatggttgtc catgggacaa ggagatgagc gggatatgca 241 actgatcgca ctggagcagc tgtgtatgct gctcctgatg tccgataatg tagatcgttg 301 cttcgaaagt tgccctcctc gaacattttt accggcgctg tgtaagatat tcctggacga 361 acttgcacct gaaaatgtac tcgaggtcac tgcgcgagcc atcacctatt acctggatgt 421 ttcggctgag tgcaccaggc gtatcgtttc aattgatggc gccatcaaag ccatatgcaa 481 tcatttagtg gttgccgatc tatcatcgcg cacatctcgc gatcttgccg agcaatgtat 541 caaggtgctc gagctgattt gcacccgaga ggcgggcgcc gtcttcgagg gcggcggcct 601 caactgcgtc ctgtccttca ttcgggactg cggctcgcag gttcacaagg acaccttaca 661 ctcggccatg tccgtggtat ccaggctctg caccaaggtg gagcccaaca ccccctgcat 721 tcagaactgc gtcgagagcc tgagcactct gctgcagcac gaagactcaa tggtatccga 781 tggagccctt aagtgctttg cctctgtagc ggatcgattc acacgaaagt gggtggaccc 841 agccccattg gcagagtacg gcctgacaac cgagttgttg aagcgcctga aaagtgtcgg 901 aggaaacaac cactcttcgc tatcagcggc tggcacccaa ccgaccagct ctagccagcc 961 cgttgcaacc acaaactcgg atgccattaa tgaaaacgtg gcgggaactg caaccatatc 1021 caacagcaca aaggttaagt catctgatgc cgccgcatcg ccgcagtcga tatcaactac 1081 gatttccttg ttgtccacac tttgtcgcgg atctccttcg attacccatg acatattgcg 1141 atcccagttg gccgatgccc tcgaaagagc tctgcagggc gatgagcgtt gcgtgctgga 1201 ctgcatgcga ttcgcggatc tcttgctgtt attattgttc gagggacgcc aagcgttaaa 1261 ccgaggaagt aacaacccga atcagggaca attggcgcct cgaccaagac gtaataatac 1321 aaacaccgat cgtacacatc gccagctcat tgattgcata cgatcgaagg actcggaagc 1381 ccttcgcgag gccatcgaat ccggcggtat tgacgtcaat tgtatggacg atgtgggcca 1441 aacacttctt aactgggctt cggccttcgg cactttggaa atggtagaat atttgtgtga 1501 gaaaggagcc gatgtcaaca agggtcaacg aagttcgtcc ctacactatg ccgcttgttt 1561 tggtcgcccg gccattgcga aaatcctgct gaaattcgga gcctatccgg atttgcgaga 1621 tgaagatggc aaaacaccat tggataaggc gcgcgaaaga ttggacgacg gccatcggga 1681 ggtggccgca attttgcaat cgcccgggga gtggatgtct ccagatcatt cgctactcaa 1741 caaagatggg aaaaagtaca cacttatgga gccccggggt gatccggaaa tggcgcccat 1801 ttacctaaag gtgcttctgc ccatattctg tagaaccttc ttgggctcga tgctgggcag 1861 cgtccggcgg gccagtttgg ccctgattaa aaagattgta cagtacgcgt acccaacggt 1921 gcttcaaagt ctcagtgaaa ccagttttag cgaagatgcg gcgtcgacat cggagcaaaa 1981 tggtgggaac ctactcattg aggtggtcgc cagtgtccta gataacgagg atgacgatga 2041 aggtcattta atagttttaa acattattga ggaaattatg tgtaaaacac aagaggaatt 2101 cctcgaccat tttgcaaggc taggagtgtt tgcaaaggta caagccctga tggacaatga 2161 tgcggaggaa ctttatgtgc aattaccagg gagctcagag gaaccagccc caacgcaaag 2221 atcttcgacc agtatggctg tcactcctag gtcaacttca gatgatccta tggaggacgc 2281 aaaggagata ttgcaaggga aaccctatca ctggcgtgag tggagcattt gccgaggccg 2341 ggattgtttg tacgtctggt cggactcagt ggcccttgag ctttccaatg gctcaaacgg 2401 atggttccgc ttcataatag acggcaaact ggcaacgatg tactccagtg gaagccccga 2461 gaacggaaat gatagttctg aaaatcgtgg cgagtttctt gagaaactaa tgcgtgctcg 2521 atcctgcgtg attgcaggag ttgtatcaca gccaattttg cccactgcga gtgcgcttcg 2581 cttagttgtt ggaaactggg ttctgcagtc acagaaaaca aaccaacttc aaatacacaa 2641 caccgaaggc caccaagtta ccgtgctgca ggatgatttg cctggtttta tttttgaaag 2701 caatcgagga acgaagcata ccttctcggc agaaactgtc ctgggtcccg atttcgcatc 2761 cggttggtca acggctaaaa agaagcgcaa caagtcaaag acggaaggtc aaaagttcca 2821 ggttcgaaac ctatcgcggg aaatttataa caagtacttc aagtctgcgc aaactattcc 2881 tcggggcgcc gtagccatac ttacggatat agtgaagcaa attgagctat cctttgagga 2941 gcagcacatg gcaccaaatg gaaactggga gaccacactt tcggacgccc taatgaagct 3001 atctcaacta atacatgaag acggcgttgt aagcgcctat gaaatgcatt cgtcgggatt 3061 ggtacaagct ttggtagccg tattgtcggt caatcattgg gaaactaatt cacctcgctg 3121 caagcgaaac aaaatgcaaa aacaacgagt ttccgtattc aagaaatgta tactggagga 3181 caacgttgag tctgcaacga acaaaccaag aactaaaagt actgcaagta ttttaattca 3241 aaagcttgtg tcggttttgg aaagcacaga gaagctgcca gtgtacttgt acgatactcc 3301 gtgcactgga tatagtttgc aaattttgca gaaaagactt cgcttccgtt tggagcgtgc 3361 agaatgcgaa agcacattgt tcgatcgatc gggacgaact cttaaaatgg aaccattggc 3421 aacgattgga caactttcca aatatctact gaaaatggtg gcaaaacaat ggtacgacct 3481 cgaccggtca acatactttt atttaaaaaa aattcgggag cataggaccg gaaccgtgtt 3541 tacgcactcc tttgatttcg acgaggaagg cttgttattc tacattggct ccaatgcaaa 3601 gacgtgcgat tgggtaaacc cagcgcaata tggtctggtg caagtgacaa gttcggaggg 3661 aaagacttta ccctatggaa aactagagga tattctatct cgcgatagca tctcactgaa 3721 ttgtcacacc aaggacaaca aaaaggcttg gttcgccatc gacttggggg tctatataat 3781 tcccactgct tatacgctgc gccatgcccg cggatatgga agatcggctt tgagaaattg 3841 gctacttcaa ggctcaaaag atggcttaac ttggaccacc ctcagcacac atgtggatga 3901 caagagtctt gtggagcctg gcagcacagc cacttggccc attacctgtg caactgacga 3961 ttccgtaagg taccgccaca ttagaatcca gcaaaatggg cgcaatgcgt ctggccaaac 4021 tcattatctg agtttgagtg gcttcgaaat ctatgggcgt gtcgtgggag ttgccgatga 4081 tatcggaaag agtgtcaagg aagcggaggc aaaaataagg cgcgagaggc ggcaaataag 4141 ggcacagctc aagcacatga ccaccggagc acgagtgatt cgtggtgtcg actggcgttg 4201 ggaggaacag gatggatgtg ccgagggcac aataaccggc gaaatacaca acggctggat 4261 cgatgtgaag tgggaccatg gcgtacgcaa ctcctatcgc atgggagccg aaggaaagta 4321 cgatttaaag ttggctgatt gcgagtttct atccaccttc gacggaaatc agtcgatagg 4381 tactgcgagc gcagctccaa aagccagtga gaaaggcaat acactcacct ctcgcaaatc 4441 gagctctact ccatccctgc ccgaagccac tgaaaagaat caaaacaccg agggcgcgtc 4501 aaatcaaacc gtttcggcgg ataacttggc ctggaagcag gctgtggaga cgattgctga 4561 gaacgtattt gcctcggcca aaacacagat tatatcaaac caacttgcta tgaacacctc 4621 ttcctccagg gaagctcgag ccaagcacaa ggagtctggc accaaccaag ttcataagga 4681 caacataagt ggaccgtcac ctttgagccg agagttggag cacatttcgg acttgtctgc 4741 catcaacaac tctatgccgg caattaactc gagcattgtt tccgacctag ccaccatttc 4801 ggagaactta tcactaactg aattgtccaa agaaaatata tgcagcgtcc ttacgccttc 4861 ttacaagccc gctgagagtg ttactgcgag tcagagctca agccatccgg atgtacagag 4921 ttcatctccg cgtgagaacg atatcaaaaa catatccaac atcgaggaaa acaataagat 4981 gaacgccaat aactcggtga ataagatatc caaggacctg ctcgcgaatc tccgaacctc 5041 aaacattgct ggctgtccac cagtcacaca actttccacc gaagccctcg aaatgatcga 5101 caaaatgcgc gatggcgtgg acatgattcg gaacaactcc aataacattc tgtccacgga 5161 cactttccca gtgccctgca caaatgtgcc agttggcgtt aagaagaccc cgaaggctca 5221 ggctttaata aatccagata atgccaacca gaagcaaatt atagttacaa ctgaagagtt 5281 ccccacaaag agttcaaaga agcccagtgt aaccttgaaa ccaggtcagc aaccaaatgc 5341 tgtgttgtca atcgtggaca tcaaggatcc gcagattgca accgaaaacg tttcggttcc 5401 cagccagatg agtatcagtg ttcctaatct gacaacaact tcagcttcgg aggtcccctc 5461 gacttccgaa gtggctaccc acaccggttt gctggagaca tttgccgcaa tcgcgcgtcg 5521 tcgtacctcc caaggtacca atatacagga taatcagatt atgaatgccg aatcgaatgt 5581 gaacgagcac ggcgatcaga acgcatcagg atcattcctc ggccactcgg taaccagttt 5641 agttaagttg gcgttgtcaa gcaacttcca ctcgggactg ctcagcaccg cacagagtta 5701 cccaagttta tcgtcaaata atagcgaaaa catagctccg tcgaacccca caaatacttc 5761 tgcgggacag caatcggcat ccactattaa tcatacccta acaatgagtc taacctccac 5821 atcgagtgac agtgagcaag tatccctgga agactttttg gagagttgca gagcgccggc 5881 gttgttgggt gatttggacg atgaggacga catggatgag gacaatgatg aagaggagaa 5941 cgaggatgag tacgaagagg ttggaaacac actgctgcaa gtgatggtct cccgaaactt 6001 gcttaccttt atggatgacg aggcaatgga gaacaggtta gtgggtgtga ccaagcgcaa 6061 gtcctgggac gacgagtttg ttctaaagag gcagttctcc gcgttgatac ctgctttcga 6121 tccacgaccg ggccgcacaa acgtcaacca aacttccgat ctggaaatat ccccccttgg 6181 tgtcgaacta cccaaacccc agcaaagtgg gcctgagact atcgagcagc ccttgctggg 6241 ccttaaactg cgaggtcctg gaatcggtgg catacccgaa gtggaaatcg acctgagcaa 6301 caccgactgg accatattca gggcggtaca ggaattactt cagtgcagtc agttgaacaa 6361 gatggacaaa ttccgaaaga tatgggagcc cacatacact attgtgtaca gggaggtatc 6421 acccgaggca caggagacca cttgcttgga tccagaggag tttccgcaaa cgcccgatgt 6481 gtcctcaaag agtggtgcat caactttgtc ccccaactcg cccatgcaca tcggtttcaa 6541 cgtagccgat aataacctgt gctccgtgga cgatgtactt gagctgctca ctcaaatcaa 6601 tggtctcaat cagtccgaaa tcgattcgga tgtcaaggag cacggtgtat ctgtgttgtc 6661 cgaagatctc ttcatcagca agaaaataac aaacaaactg cagcagcaaa ttcaggatcc 6721 cctggtgctc gctagcaacg cgctgcctaa ttggtgcgag aacttaaacc aatcctgccc 6781 gtttctgttt ccatttgaga ccaggcagtt gtactttaac tgcacgtcgt tcggagcttc 6841 gcgcagcata gtatgcctac agtcccagcg agatgtcact gtggaacgac agaggatacc 6901 catcatgagt ccgcgacggg atgatcacga attccgcatc gggcgtctta agcacgaacg 6961 cgttaaagtt ccgcgaaacg aggatctgct catgtgggca atgcaggtca tgaagactca 7021 ctgcaatcgc aagtccgtgc tggaggttga gtttttggat gaggaaggaa ctggtttggg 7081 accaacgttg gagttctatg ccttggtggc cgcagaaatt cagcgttccg acctttgtat 7141 gtggctgtct gacgatgaat tgggcgagga cactgaaagc tcgccgctga gtgcggaagg 7201 gaactcaaaa cctgttgggt attacgtaaa tcgcagggag cacggaattt tcccagcacc 7261 gctaccgcag aataccgaaa tttgtgagaa ggttcttaaa tacttctggt tcttcggcgt 7321 ttttgtggca aaggttttac aggatatgcg cttggtggac ataccattat caacatcatt 7381 tctacaactg ctttgtcaca acaaagtgtt atcacgtaat ctccaaaagg tcatttcgga 7441 tagacgaaat ggcgaccttt cagtcgtatc agaagaatct gatatagtag aaacttgcac 7501 taaattgctg cgaactgatt ccaacaagtc aaatgcattc ggcggtattc tgtcattgga 7561 aaacttgaaa gaaatagatc caactcgtta tcaattccta caagaaatgc aaaatctttt 7621 gatgcggaag cagtcaattg agtttgacga gacgataagc gcagagaaga aacaagagct 7681 tatcaacgag cttaagctgc acacccaaaa tggcttggag gtatctctcg aggacttggc 7741 ccttacgttc acgtatctgc ccagttcctc gatctatgga tacacccagg ctgaactgct 7801 gccgaatgga tcgtcagtga acgtcaccat cgataatctg gaagcgtact gcgaactgct 7861 gatgaacttc atactgcagg acggaatcgc tcagcaaatg aaggccttca gtgatgggtt 7921 taacgaagtg tttcctctaa agaagttggc cgcttttact ccctcagagg cgcgaatgat 7981 gatttgtggc gagcagttcc cccattggag ccgagaagac attatttcat acactgaacc 8041 aaaacttggt tacaacaaag acagtcccgg attccaacgc tttgttaacg ttttgttaag 8101 catgtcggga gacgaaagga aggcgttcct ccaattcaca actggttgca gtagcctgcc 8161 cccaggagga ctggccaacc ttcatccccg actgacagtt gtccgtaagg tagatgctgg 8221 cgttggaagc tatccatccg tgaacacatg cgttcactac ttaaagcttc ccgactaccc 8281 aactgaagag atcatgaaag agcgcttgtt aacagcaact aaggaaaagg ggtttcattt 8341 aaattaaacg atttattgta ctcgatattc aagttaataa aatttgaacc ttttgttatt 8401 taaa //