Dbfetch
LOCUS XM_012207579 5682 bp mRNA linear INV 02-APR-2015 DEFINITION PREDICTED: Atta cephalotes uncharacterized LOC105626275 (LOC105626275), mRNA. ACCESSION XM_012207579 VERSION XM_012207579.1 DBLINK BioProject: PRJNA279976 KEYWORDS RefSeq; corrected model. SOURCE Atta cephalotes ORGANISM Atta cephalotes Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Atta. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012130069.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Atta cephalotes Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-168 ADTU01004724.1 31947-32114 c 169-294 ADTU01004724.1 29759-29884 c 295-480 ADTU01004724.1 28939-29124 c 481-615 ADTU01004724.1 28724-28858 c 616-616 "N" 1-1 617-705 ADTU01004724.1 28635-28723 c 706-810 ADTU01004724.1 28406-28510 c 811-2017 ADTU01004724.1 27024-28230 c 2018-2129 ADTU01004724.1 26429-26540 c 2130-3491 ADTU01004724.1 24967-26328 c 3492-3734 ADTU01004724.1 24324-24566 c 3735-4087 ADTU01004724.1 23869-24221 c 4088-4340 ADTU01004724.1 23491-23743 c 4341-4567 ADTU01004724.1 23161-23387 c 4568-4809 ADTU01004724.1 22680-22921 c 4810-4824 ADTU01004724.1 22501-22515 c 4825-5341 ADTU01004724.1 21227-21743 c 5342-5682 ADTU01004724.1 20560-20900 c FEATURES Location/Qualifiers source 1..5682 /organism="Atta cephalotes" /mol_type="mRNA" /db_xref="taxon:12957" /chromosome="Unknown" /sex="male" gene 1..5682 /gene="LOC105626275" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:105626275" CDS 1..5682 /gene="LOC105626275" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: uncharacterized protein LOC105626275" /protein_id="XP_012062969.1" /db_xref="GeneID:105626275" /translation="MFSSTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHAP AIVQAVETHLQKVRSDIKLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDEN TRASMWKLRQTWNDVFPPNKLFSLDVRVQSIDPAWPITAPPTSIPSGSIHVNPRFLSM PQQATTSIVPPVKLPPGEPVTTTEAVMREQLLKKQRELLELQKKKXELELLQAKASLE QQQRQLDKQAGSLKTEMVVSTAHVVPTTETTTQAKPVAPVVPNQTSKQVAKQFPAAAA SLLKNVGANSGPRIAPASSIAVASAKPVSRDPRLKPTSIIQDVVVPTTDPRQRPSTTS PKEVRSESQTQQVANTIVTSNQLKQQPSKSAVTINKLPANPGAGPDNTTLLNVMNNNN SDNNSNNKNFNSNINKDATSHRISQKKDPRLNINSSANLNSNNSKNIQNLSVCSNNSS SVLSMGNRGSGGSDINKSKDSKSSNSRSSSSLADKSSTSSKSSHRKLGNKSRSKQPQI CPNKIPKVDRDSSPIRSKSREKDSGDSSPSSRTSPQSFQASKSRKKNTKSRKRSPSPP YRIPRRNDAKSSSSLNNSGGVTEEEQSGSLIVSPPHPPAFKEIRPNARQRNYVRRNKD DSLSPERSPVNAGNTQIAAEPTLESSSKDEDLRAPLSLPGAAVSIPEKKEDLDLRVLP PVNTNKRRSEECVEATPPKKTKAEKFDALFGNEDVDLRTLTHPNAGRPPTPPPPVISG EDGKDGWAKLKTPTKNDRDKQVNNTDDKRDRDRNRDRLGRLRLYNKLPDDPKERRRTL SNEEQDSRPGRRGRENDKPERNDDRNIEIIMKQAAEQLNQGSITKMQYNTLIQEVLHM SEDRKLRAAQRKEKEAGTVIWEKGINIDMSGPGDRAATFSPSNDKEMIRNKEHPMPRN PNGPRWQNQPWQQPWAHPPGPPYGGPQGHFNSDMRPVGPWQNPRHFGPMRPDYQYHSG FNHNMGPNPRLGPGMMSPMGPNGPIMSNLLPNGPMGPMGPMPNPPMPMGCHPAMMMNN GPMPNLMTNMPPLTSGRNVSPNTSGKYDLEDNDHSYNNAVSKNPGSHSRELPPPDSKL LADIARDTMKSINIDNIPREIRYYGQTGVVFMNWDDPREIGFQDGIRRILIDEKDTIT CAFNDQYKEFMYEGEVHRIKLGAPTRELYVDDCWYECYFGGMPITIELGGKKVSVKLE GPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHTLEFTDALQ TVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRAGHVKITGMRGEGPIESPP PAAPLLAQKPKVDAAPAPSQLPTVENESTSQDGIDFTSTSKPDLQLDILSSVLPSAMA PSSGLSYQAEPVENPPAPTLPLNMSELFQRLVETGIVPNLTEQKKQEEEEKKESVITP VTFDKPETLKIKQPAISTALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDS ARKAHSRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTAETEGMTADDSPQETLQPS VPTGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAVNYEDKNYHPLCLEDYKEKSSARA LEKSALALEETVSEMEENKIECSEEMPVDETKQEESDIEISKKEQLESTENLNQVEVN MQQLLDSIVASEKKEESVDAENSEILQDDSEEKTENVENVNEESTEAVLESAEQDAPT VNKEDESPGEGVIIPFENIKIKEEPLDDVDEQIDSEVFDFANVEIKEEPMELEPDPEQ IVNESSTVDTTYAAVKSSIDGNVELDSTPPAIPAAPSRIKINITKPLNINKEPEENKE KEKVAVETSAEEKTEQPLVAASIKPSLLGRKLSILPPVEKGQELSGLCSIM" ORIGIN 1 atgttctcgt cgacaaaatc caaagaagtt gcagatgagt acatctcatc tctgtctgat 61 cttactatta acagtaagcc gcttatcaac atgctcacta tgctggctga agataatatt 121 gaacatgcac cagcgatagt gcaagctgtc gagactcatc tacaaaaggt gagaagtgac 181 atcaagttac cggtactcta tctcatcgac tcgattgtca agaatgtgaa tggagactat 241 ttgaatctct tcacgcagaa catagtaaac acattctgtg gggtgttcga gaaggttgat 301 gagaatacaa gagctagcat gtggaagttg cggcaaacgt ggaatgatgt atttccacca 361 aataagttat tttcattaga tgtacgggtg caaagtatcg atcctgcatg gccaatcact 421 gccccaccta ctagcattcc ttcaggatct atacatgtca atccaagatt tctttcaatg 481 cctcagcaag ccacaacatc aatcgttccg cccgttaaat tgccaccagg agaaccggta 541 acaacaacag aagcagtgat gagagaacag ctgctgaaga agcagcgaga attgttagaa 601 ttacaaaaga aaaaantcga gttagagttg ttgcaagcta aagcaagttt agagcaacag 661 cagaggcaac ttgacaaaca agctggaagc ttgaaaacgg aaatggttgt gtccactgca 721 catgttgtgc caactacgga gacaacaacg caagcgaaac ctgtcgcacc tgtagtgcca 781 aatcaaactt caaaacaagt agcaaaacaa tttccagcag cagcagcatc acttttgaag 841 aacgtaggag caaacagtgg tccacgaatt gcaccagcca gtagtatagc agttgcatca 901 gcgaagccag tctcgcgaga tccacgtttg aagcccactt ctattattca ggatgtggta 961 gtgccaacaa cagatccacg acaacgaccg agtacgacca gtccgaaaga agtgcgaagc 1021 gaaagtcaaa cgcagcaagt ggcaaataca attgtaactt caaaccaatt aaaacaacaa 1081 ccttcgaaat cggctgtaac tatcaacaag cttccggcca atcccggcgc cggacctgat 1141 aatacaacgt tattaaacgt tatgaataac aataattctg ataataatag caataataaa 1201 aattttaata gtaatataaa taaagatgct acctcgcatc gaataagtca aaagaaagat 1261 cctagattaa atattaatag tagtgctaac ctaaacagta acaactccaa gaacattcag 1321 aatttatcgg tttgcagtaa taactcgtct tcagtattat caatgggaaa tcgaggaagt 1381 ggaggtagtg acatcaacaa gtcaaaagat tcaaagagct caaattcgcg cagctcttcc 1441 tctttggctg acaagtcttc cacttcctcc aaatcttcgc ataggaaatt aggcaataag 1501 tcgcgatcta aacagcctca gatatgtccg aataagattc cgaaagtcga cagagactcg 1561 agtccgatta gatcaaaatc tcgtgaaaaa gacagcggag acagttcacc gtcctcacgt 1621 acctctccac aatccttcca agcctctaaa agccgtaaga agaatacaaa atcgagaaag 1681 cgtagtccaa gtcctccgta tagaatcccc aggcgtaacg acgcgaaatc gagctcgagc 1741 ttgaataatt ccggtggtgt tactgaggag gagcaatctg gttcattaat agtatctcct 1801 cctcatccac ccgcattcaa agagatcaga ccgaacgcta gacagagaaa ttatgtaaga 1861 cgaaataaag acgacagtct tagtccggaa cgttctccag tcaatgctgg aaatactcaa 1921 atcgcagctg agccaacatt ggaatcttct agtaaagacg aagatctcag ggcaccacta 1981 tctctacctg gagctgctgt ttctatacct gaaaagaaag aagatttaga tctacgagta 2041 ttaccacctg ttaatactaa caaaagacgc agtgaggaat gtgtcgaggc gaccccaccg 2101 aagaaaacta aggctgaaaa gtttgacgca ttatttggta atgaagacgt ggatttgcgc 2161 actttgacgc atcctaatgc cggtcgacct ccgacacctc caccgcctgt gatttccgga 2221 gaggatggaa aagatggttg ggcgaagtta aagacgccca cgaagaatga tagagataag 2281 caagttaata atactgacga taagcgcgac cgagatcgta atagagatag gttggggcgt 2341 ctcagactct ataataaact tccggacgat cctaaagaga gaagaagaac attatcgaat 2401 gaggaacagg attccagacc aggacgcaga ggccgagaga atgataaacc tgagagaaat 2461 gacgatagaa atattgagat aataatgaag caagctgccg aacagttgaa tcagggatcg 2521 attacgaaaa tgcagtacaa tactttgata caagaggtgt tacacatgag tgaagatcgg 2581 aaattgcgag ctgcgcagcg taaggagaaa gaggctggca cagtgatatg ggaaaagggt 2641 attaatatag acatgtctgg tcccggagat cgcgccgcga cgttcagccc gtccaatgat 2701 aaagaaatga tacgaaacaa ggaacatcca atgccacgaa atccgaatgg tccaagatgg 2761 cagaatcagc cgtggcaaca accttgggcg catccgccgg gaccaccata cggtgggccg 2821 cagggacact tcaattcgga catgagacct gtcggtcctt ggcagaatcc gcgacacttc 2881 gggccaatgc gaccggatta ccagtaccat agcggtttta atcacaatat gggccctaat 2941 ccgcgcttag gacctggtat gatgagtcca atgggtccaa atggaccgat catgtcgaat 3001 cttttgccga atggtccaat gggaccaatg ggacctatgc caaatcctcc tatgccaatg 3061 ggatgtcatc ctgcaatgat gatgaataac ggaccaatgc ctaatcttat gacaaatatg 3121 ccaccattaa catctggcag aaacgtatca ccgaacacat ccggcaaata tgatcttgag 3181 gataatgatc acagttacaa taacgcagtg tcaaagaatc ccggctcgca tagtcgcgaa 3241 ttgccaccgc cggattcaaa attattggct gacatcgcga gagacactat gaagtctata 3301 aatattgaca atataccgcg ggagattcgt tattacggac aaaccggtgt agtattcatg 3361 aattgggatg atccacggga gatcggtttt caggatggta taagaagaat attgattgat 3421 gagaaagaca ctataacttg tgcatttaat gaccaatata aggagtttat gtatgaagga 3481 gaagtacata gaatcaaact tggagcacct actcgagaat tgtatgtcga cgattgctgg 3541 tatgagtgtt actttggtgg tatgccaata acaatcgaac tcggcggcaa gaaagttagt 3601 gtaaagttgg agggtcctcc tccacaagtc aaaatcggca ctgtaaagcg aacggatctc 3661 gtggttgcga aaattaatct tattatcaat gcgcgaaata tggtgccagt atttttagac 3721 gcaaaaccac agatatttga aatcgaggga aagcctcata ctctggaatt tacagatgca 3781 ttgcagacag ttctgctaaa tggacgacca tttaaagttg aatttggagg gttacctaaa 3841 cctattattg ttagagacaa gaagcatttc atcagatttt cggtattgcc tagaggagtg 3901 cgtgctggtc atgttaaaat taccggaatg agaggtgaag gtcccatcga atcgccgcca 3961 ccggcggcac ctttgttggc tcaaaaaccg aaagtagacg ctgctcctgc gccaagtcaa 4021 ttgcccactg tagaaaatga atccacgtcg caagatggta tagattttac ttctacttca 4081 aaaccagacc tgcaattaga tatcttatca tcagttttgc catcagcgat ggcgccgtca 4141 tccggtttgt cgtatcaagc cgaacctgta gaaaatccgc cagcaccgac gttgccactg 4201 aacatgagcg aattattcca aagattggtt gagactggta ttgttccaaa tctcacagaa 4261 caaaagaaac aagaggaaga agagaagaaa gaatctgtga ttactccagt caccttcgat 4321 aaaccggaaa ctcttaagat taaacaacca gcaatttcaa cagcattgta cagtggtatg 4381 caatgtagtt cttgtggtgc tagattcgca cctgagttag ctactcggta cagccaccat 4441 ctggattggc acttcagaca gaacaggcgt gaacgtgatt ctgctagaaa agcgcattct 4501 cgaccatggt attatgacgt cagtgattgg atacaattcg aggagatcga agatttggag 4561 gacagagcac aaagctggtt cgagactgag aaacaaacag cagaaacgga aggtatgact 4621 gctgatgatt cgcctcagga aacattgcag cccagcgtac caactggcag cgatgaggat 4681 tcgcgatgcc aagtatgcca tgacgcattt gagcaattct ataatgagga aaaggaggaa 4741 tggcatttga gaccagcggt taattatgag gacaagaatt atcatccact ttgtttagaa 4801 gattacaagg aaaaaagttc agcgagagca ttagagaagt cagctttggc gcttgaagag 4861 accgtttcag aaatggaaga aaataaaata gaatgttctg aagaaatgcc cgtagacgaa 4921 actaagcagg aagagtccga catagaaata tcgaaaaaag aacaactcga gtctacggag 4981 aatttgaatc aagtagaagt gaatatgcag caacttttgg attctattgt tgcatcagag 5041 aaaaaagaag agtctgttga tgcagaaaat tccgaaattc tgcaggatga ttcggaagag 5101 aaaacagaaa atgtagaaaa tgtcaatgaa gagagtacag aagctgtctt agaaagcgcc 5161 gagcaagatg cgcctacggt aaataaagaa gacgaatctc cgggcgaagg tgtaataata 5221 ccttttgaga atattaaaat taaagaggaa ccactagatg atgttgatga acaaatcgat 5281 agcgaagtgt ttgatttcgc caacgtggaa atcaaagagg aacctatgga acttgaacca 5341 gatcccgaac aaattgtaaa tgaatcgagc acggtcgata caacatatgc cgcagtgaaa 5401 agttccatcg acggaaacgt ggaattggac tccacaccac cagctattcc cgcggctcca 5461 tcgcgaatta agattaacat tactaagccg ttgaacatta acaaagagcc agaggaaaat 5521 aaagagaagg agaaagtagc agttgagaca tcagcagagg aaaagacaga acagccatta 5581 gtggcagctt ctattaagcc aagtctactg ggtaggaaac tatcgatttt acctcctgta 5641 gaaaaagggc aagaattatc aggactttgt tctattatgt aa //