Dbfetch
LOCUS NM_206023 2488 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Atf6, transcript variant C (Atf6), mRNA. ACCESSION NM_206023 VERSION NM_206023.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2488) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2488) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2488) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2488) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2488) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2488) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2488) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2488) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2488) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2488) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2488) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2488) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2488) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2488) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2488) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2488) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2488) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2488) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2488) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2488) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2488) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2488) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2488) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2488) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_206023.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2488 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2488 /gene="Atf6" /locus_tag="Dmel_CG3136" /gene_synonym="atf6; ATF6; CG3136; DM15; Dmel\CG3136" /note="Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org" /map="41D4-41E1" /db_xref="FLYBASE:FBgn0033010" /db_xref="GeneID:35480" CDS 99..2324 /gene="Atf6" /locus_tag="Dmel_CG3136" /gene_synonym="atf6; ATF6; CG3136; DM15; Dmel\CG3136" /note="CG3136 gene product from transcript CG3136-RC; CG3136-PC; Atf6-PC" /codon_start=1 /product="Atf6, isoform C" /protein_id="NP_995745.1" /db_xref="FLYBASE:FBpp0085417" /db_xref="GeneID:35480" /db_xref="FLYBASE:FBgn0033010" /translation="MDINEYNLYNDLSLLGEVTENNYDNNIVHDILNSSAFYNDTSLD LSELIPDLQKEAFGLHFSSNPITSEFSLSSPISGLKQIPSACSGEFKRNVNDNNFQLD LTNSRNDLPEPNSSPTRSLNRSNVNGCSNEEAVYPLLVDSDKFDPFFEPAKVRSPNKE FNSTISNLSDIKNELPETSQDLGFNSYNTSRNNSTLTKSWPINTELNLDNQVPKTVLP LSRTIYLPSHDYKGLLPTVKCNGDRTLKKNVNVRSKISNIVIKKKNATFIQSLKESTP SHTMDDKIYKKYQRMIKNRESASLSRKKRKEYVVSLETRINKLEKECDSLKAENITLR DQIFLLATSCQRESGNANGLLHNYSGSERSENKNGRFTSKAKHCNKNNTTATIKKNVA ILFAMAFVVSLNAGNFQKYLNIPNNLEGKSEIEPVGKQLSMSNRRLLWADSEEEYKEK NNLSTFLSGKQKEPSLYFLNSGIRNHKINSFENITKNVSHTYSYNEPPPLTYLSTRNC INRCRSHNGSSNQSKYFMLAQNLHKWISGTLNVSNFSKEKEDSNGFEFFNNYFEEKRD IHIKHEKRKMFIDLNDYTSVLPEKQQKLNNTKSFENMREQINVISKIERRDDTFYVFS FNMDHALLPALSYNSSYRPKLSLVLPLENPGINGKMKMIQVDCEVFNTKDFEVSHHLF PAKLRQNVIPRKPNKLNIKKSSTETPVSKTQRVRNFYKVGSRNQATVASSFNKETKFI N" ORIGIN 1 ttaatgtgcc aaaacgtcgt gtatttgctg acgtttgctg tggtaatcaa ttctggttca 61 gtaaacatat tcaattcgaa ttctatggcc gattagctat ggacatcaat gaatataatt 121 tatacaacga tttatcgctg ttgggagaag tgactgaaaa taactacgac aataatattg 181 tacacgacat tctgaactca tcagcattct acaatgatac atcgttagat ctaagtgaat 241 taatacctga tcttcaaaaa gaagcctttg gattgcattt ctcgtcaaac ccaataactt 301 cagaatttag cttgagttcc ccgatttctg gtttgaaaca aattccttca gcgtgttctg 361 gtgaatttaa aagaaatgta aatgacaata attttcaatt ggatcttacc aacagtagaa 421 atgatttacc tgagcctaat tcgtctccca caagaagctt aaatcgttca aatgtaaatg 481 gatgttctaa cgaagaggcg gtctatccac tcttagtcga ttcagataag tttgatccat 541 tttttgaacc tgctaaagtt cggagcccca acaaagaatt caacagcacg atttctaatc 601 tatcagatat aaaaaacgaa cttccggaaa cttcccaaga cttgggtttt aattcatata 661 acacttcaag gaataattca actttaacca aaagctggcc aataaatact gagctgaatc 721 tagataatca agttccaaaa acagttttac ctttgtcaag gacaatttat ttaccttcac 781 atgattacaa agggcttttg ccaacagtga aatgtaacgg tgatagaacc ttaaagaaaa 841 atgttaatgt caggtctaag atttctaata tcgttattaa gaaaaaaaat gcaactttta 901 tacaatcatt gaaagaaagc actccatcac atacaatgga tgataagatc tacaaaaaat 961 atcaacgtat gattaagaac cgagagtctg cttccttatc acgcaaaaaa agaaaggagt 1021 atgttgtttc attagagact cgaataaata aacttgaaaa agaatgcgat tccctaaaag 1081 ctgaaaatat aacattacgg gatcagatat ttctgcttgc cacctcttgt cagcgtgaat 1141 ctggaaatgc aaatggtctt ttacataact attcaggatc tgaacgaagc gaaaataaaa 1201 acggaagatt tacatcaaag gcaaagcatt gcaataaaaa taataccaca gcaaccatta 1261 aaaaaaatgt agctatatta tttgctatgg cttttgtggt atctctaaac gctggaaatt 1321 ttcaaaagta tctcaacata ccaaataact tggaaggtaa aagtgagatt gagcctgtcg 1381 gaaaacaatt aagcatgtcc aatcgacggt tactatgggc tgattcagag gaggaatata 1441 aagaaaaaaa caatctaagt acatttcttt caggcaaaca gaaagaaccg tctctatatt 1501 tcttaaattc tggtatacgc aaccacaaaa tcaattcttt tgaaaacatt accaaaaatg 1561 tatctcatac ttactcatat aatgaacctc cacccttaac atatttaagt acacgaaact 1621 gtataaacag gtgcaggtcc cataatggtt cttccaatca atcaaaatac tttatgctcg 1681 ctcaaaattt gcataaatgg attagcggca ctttaaacgt gtctaatttt tcaaaggaaa 1741 aagaggattc aaatggtttt gaatttttta ataattattt tgaggaaaaa cgtgacatac 1801 acatcaaaca cgaaaagcga aaaatgttta ttgatttaaa tgattacaca tctgttttgc 1861 cagaaaaaca gcaaaaacta aacaatacga aatcttttga aaatatgcgc gaacaaataa 1921 atgtaattag taaaattgag agaagggatg atacttttta cgtattttca tttaatatgg 1981 atcatgcact acttccagca ttaagttaca acagtagtta tcgcccaaaa ttgtcgttgg 2041 tacttccctt agaaaatccg ggaattaacg gtaaaatgaa aatgatccaa gtagactgtg 2101 aagtatttaa tacaaaagac tttgaagtta gtcatcattt gtttccagct aaacttcgtc 2161 aaaacgtaat tccacggaag cccaacaagt taaatataaa aaaaagtagt actgaaacgc 2221 cagttagcaa aacccaaaga gtgcgtaatt tttacaaggt gggctctaga aatcaagcta 2281 ccgtcgcatc tagttttaat aaggaaacaa agtttatcaa ctaactatca gccttatctt 2341 gttgtacagt attgacaggt atgtgacagg tataaggaag ctttaccgac ctttgaaagt 2401 gtacatattc ttatacccgt tactagtaaa gtaaaagggt atactagact tgttgaaaag 2461 tatgtgacag gcagaaggaa gcgtttcc //