Dbfetch
LOCUS NM_205903 3377 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster polypeptide N-Acetylgalactosaminyltransferase 2, transcript variant B (Pgant2), mRNA. ACCESSION NM_205903 VERSION NM_205903.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3377) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3377) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3377) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3377) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3377) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3377) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3377) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3377) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3377) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3377) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3377) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3377) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3377) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3377) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3377) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3377) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3377) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3377) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_205903.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3377 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3377 /gene="Pgant2" /locus_tag="Dmel_CG3254" /gene_synonym="CG3254; Dmel\CG3254; DmGalNAc-T2; pgant2; PGANT2" /note="Polypeptide N-Acetylgalactosaminyltransferase 2" /map="23F1-23F1" /db_xref="FLYBASE:FBgn0031530" /db_xref="GeneID:33556" CDS 359..2260 /gene="Pgant2" /locus_tag="Dmel_CG3254" /gene_synonym="CG3254; Dmel\CG3254; DmGalNAc-T2; pgant2; PGANT2" /EC_number="2.4.1.41" /note="CG3254 gene product from transcript CG3254-RB; CG3254-PB; Pgant2-PB; polypeptide GalNAc transferase 2" /codon_start=1 /product="polypeptide N-Acetylgalactosaminyltransferase 2, isoform B" /protein_id="NP_995625.2" /db_xref="FLYBASE:FBpp0292961" /db_xref="GeneID:33556" /db_xref="FLYBASE:FBgn0031530" /translation="MRRNIKLIVFVSIIWMFVMVYYFQSSTEKVENRALRLREVATAM QQYQDDSSSAAAASTARQWAPAGGGAGPGAAAGAAGSGADDPGGNVILIGSVKDFERN AVHGLKLNGIVALEETSQGLSGGTGGPGGRLPVAPSGRGTEVEYFNEAGYIRAGALRN GEDPYIRNRFNQEASDALPSNRDIPDTRNPMCRTKKYREDLPETSVIITFHNEARSTL LRTIVSVLNRSPEHLIREIVLVDDYSDHPEDGLELAKIDKVRVIRNDKREGLVRSRVK GADAAVSSVLTFLDSHVECNEMWLEPLLERVREDPTRVVCPVIDVISMDNFQYIGASA DLRGGFDWNLIFKWEYLSPSERAMRHNDPTTAIRTPMIAGGLFVIDKAYFNKLGKYDM KMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKRHPYTFPGGSGNVFARNTRRA AEVWMDDYKQHYYNAVPLAKNIPFGNIDDRLALKEKLHCKPFKWYLENVYPDLQAPDP QEVGQFRQDSTECLDTMGHLIDGTVGIFPCHNTGGNQEWAFTKRGEIKHDDLCLTLVT FARGSQVVLKACDDSENQRWIMREGGLVRHYKINVCLDSRDQSQQGVSAQHCNSALGT QRWSFGKYA" ORIGIN 1 caactaagca gatgattaat taaataactt aataactcga tgttaacaaa ttacaaataa 61 cgaaacgtat atttttgtac acacgccttg tacaaatagt ctagcaaaat accaaaacac 121 caaagtgcat ttaatacaac cgaaaagtgt gtgaaagcgc aagcaatagg caaaaatcat 181 ggtccattac atatgaaaag tgataaaata acgtgttcac atcgcatttt gagttgaaga 241 gcgcataact catttgccaa aacaaccaaa ccaaaaagta aataaataaa tatcgaagtg 301 aacgtgatac gtcctcaacc caattagcag ttaaatatat aaacatcagc tatccaaaat 361 gcgtcgcaac atcaagttaa ttgtattcgt gagcatcatc tggatgttcg tgatggtcta 421 ctacttccag tccagcacag aaaaggtgga aaatcgagcg ctgcggctac gtgaggtggc 481 caccgccatg cagcagtacc aggacgactc ctcctcggcg gccgccgcct ccaccgcccg 541 ccagtgggcg ccagctggcg gaggagcggg tccgggagcg gcggcgggag cagctggcag 601 cggagccgac gatcccggcg gcaatgtcat cctaatcggc tccgttaagg acttcgagcg 661 caatgcggtc cacggcctca aattgaatgg gattgtggct ctggaggaga catcgcaggg 721 tctcagtggc ggaacaggtg gacctggtgg tcgcttgcca gtggcgccaa gtggtcgtgg 781 caccgaggtt gagtacttca atgaggcggg ctacattcgg gcgggtgctc tacgcaatgg 841 cgaagatccc tatattagga atcgcttcaa tcaggaggcc agcgatgctc tgcccagcaa 901 tcgggatata cccgacacca gaaatcccat gtgtcgtacc aagaagtacc gcgaagatct 961 accggagacg agtgtcatca ttaccttcca caacgaggcg aggtccactt tgctgcgaac 1021 catcgtgagt gtccttaacc gaagtcccga gcatttgata cgcgaaatcg tcctggtaga 1081 tgactacagt gatcatcctg aggatggtct ggagctggcg aagattgaca aggtgcgagt 1141 gattcgcaac gacaagcgcg agggtttggt gaggtccagg gttaagggtg cggatgcagc 1201 tgtgagtagt gttcttacct tcctggacag ccatgtggag tgcaacgaga tgtggctgga 1261 gcctcttctg gaacgcgttc gcgaggatcc cacccgcgtc gtgtgccccg tgatcgatgt 1321 gattagcatg gacaacttcc agtatatcgg cgcctcggcc gatttgcgcg gcggctttga 1381 ctggaacctg attttcaagt gggagtatct tagtccctcg gagcgggcga tgcgccacaa 1441 tgaccccacc acggccatcc gtactccgat gatcgccggt gggctgttcg tcatcgataa 1501 ggcgtacttc aacaaactgg gcaagtacga catgaaaatg gatgtgtggg gcggcgagaa 1561 tctggagatc tcgttccgcg tgtggcagtg tggcggcagc ctggaaatca taccctgcag 1621 ccgtgtgggt cacgttttcc gcaaaaggca tccgtacacc ttccccggcg gaagcggcaa 1681 cgtcttcgca cggaacacac gacgtgcggc ggaggtctgg atggatgact acaagcagca 1741 ttactacaac gctgtgccac tcgccaagaa cattcccttc ggcaacattg atgaccgtct 1801 ggctttgaag gagaaattgc attgcaagcc gttcaaatgg tatctggaga atgtctatcc 1861 cgacctgcag gcacccgacc cacaggaggt tggccaattc cgacaggata gcaccgagtg 1921 cttggacaca atgggccact taatcgacgg cactgtggga attttcccat gccacaacac 1981 cggcggcaat caggagtggg ccttcacgaa gcgcggcgag atcaagcacg acgacctctg 2041 cctgaccctg gtcaccttcg cccgggggtc acaggtggtc ctgaaggcgt gcgacgactc 2101 ggagaaccag cggtggatca tgcgcgaggg cggactggtg cggcactaca agatcaacgt 2161 gtgcctggac tccagggatc agtcgcagca gggcgtgagt gcgcagcact gcaactcggc 2221 actgggaacg cagagatggt ccttcgggaa gtatgcgtga ggaagaggac ttggtttcga 2281 gtaaactgaa ggcggaggat aatgcagatc ggtcgtgata tatgtgcaag tcgatgggag 2341 gaagcctacc taacgcgatg cggattgtat gtgtactgta ctgtgtactc gtaatgattt 2401 acccatgttc atttgttgct gaacaaaagc actcagacac acattatata tatatatata 2461 tatatatatt aactgcatgg atacggaata agttcaactt tagttaaaaa tcgaatcaac 2521 tgctcccggg ggattaatgt taaacgctac ctaaacgaaa aaccaacaca taaagggcat 2581 acaaaaaacg tacttagact gattaatttt ttgtatatgt ataaaactat atgaaaatat 2641 gaaaatatga aatgatactg taaccctaat gcaacctttg gcagctgatt aatactaaac 2701 tgtaactaaa taatttgcat tctcacacgg cacacattca ttcaagtcaa ttaagatcta 2761 tacgaaaatg ccacaaatta gtatccacat atggtccgtt tcagaaaatc tagataccca 2821 agctcagagt cttctcaacc ttgtacttaa aataaaacat gaaatgttat cattagttct 2881 aattatacac ctaagtgaaa tcatttaaaa atcattgata actatgtgaa atatgtgtat 2941 gtgtatatat tgaggaagac atattatttg aatgtttatc gaaggccaaa aaagtgaaca 3001 tttcgtttaa atgcattaaa catttaaaaa ctgcaggcaa agcggaaaaa ttggattgtc 3061 tctggtgttt cacaatcaat tggttattat ttcgaatgca taaatcattt gaacttttaa 3121 gaggaaaact tgcttgcttt ttatcacaga cacacaaccg aattgaattg tgagcatatt 3181 ttttccaata aattctctta attaaaatgg ctggcaaaag tggcaaatga tttgaaataa 3241 agacgaaaag acacaaacca aatattgtat atttgtttgt aagcaaaaca aaaatgaatg 3301 attaaacaag aatttttaat ttaaaaccac tagagaggca acaaaaaagg aaacaataaa 3361 tggaaacatt taaaaac //