Dbfetch
LOCUS NM_202398 1468 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana protein tyrosine phosphatase 1 (PTP1), mRNA. ACCESSION NM_202398 VERSION NM_202398.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1468) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1468) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1468) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1468) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1468) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). FEATURES Location/Qualifiers source 1..1468 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1468 /gene="PTP1" /locus_tag="AT1G71860" /gene_synonym="ATPTP1; F14O23.24; F14O23_24; protein tyrosine phosphatase 1; PROTEIN TYROSINE PHOSPHATASE 1" /note="Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress." /db_xref="Araport:AT1G71860" /db_xref="GeneID:843516" /db_xref="TAIR:AT1G71860" CDS 138..971 /gene="PTP1" /locus_tag="AT1G71860" /gene_synonym="ATPTP1; F14O23.24; F14O23_24; protein tyrosine phosphatase 1; PROTEIN TYROSINE PHOSPHATASE 1" /inference="Similar to RNA sequence, EST:INSD:EH917520.1,INSD:BP859787.1,INSD:BP573844.1, INSD:AV829887.1,INSD:AV809099.1,INSD:DR231364.1, INSD:BP859349.1,INSD:DR231371.1,INSD:ES183532.1, INSD:BP851445.1,INSD:EL210761.1,INSD:AV566724.1, INSD:DR231372.1,INSD:EL027906.1,INSD:AV557850.1, INSD:EH798203.1,INSD:EL185518.1,INSD:BX837025.1, INSD:BP584889.1,INSD:BP607050.1,INSD:BP802020.1, INSD:AV560848.1,INSD:BP567954.1,INSD:DR231367.1, INSD:AV442735.1,INSD:EL209557.1,INSD:ES190751.1, INSD:BP570034.1,INSD:DR231363.1,INSD:BP856210.1, INSD:AV816179.1,INSD:DR231370.1,INSD:EH986141.1, INSD:BP843923.1,INSD:DR231361.1,INSD:DR231365.1, INSD:ES122444.1,INSD:EL289567.1,INSD:ES084979.1, INSD:AA042465.1,INSD:BP853879.1,INSD:ES203074.1, INSD:EH800650.1,INSD:EL192593.1,INSD:EL036558.1, INSD:BP860853.1,INSD:ES087772.1,INSD:AV522194.1, INSD:ES152373.1,INSD:ES025426.1,INSD:ES025021.1, INSD:AV560002.1,INSD:EL988078.1,INSD:EG499540.1, INSD:EL982523.1,INSD:BP859952.1,INSD:EL996936.1, INSD:BP852064.1,INSD:BP855279.1,INSD:EL202837.1, INSD:BP582163.1,INSD:EL986119.1,INSD:DR231366.1, INSD:DR231368.1,INSD:AV559677.1,INSD:BP574854.1, INSD:EL205166.1,INSD:BP608404.1,INSD:EL127441.1, INSD:AV521742.1,INSD:EH796164.1" /inference="similar to RNA sequence, mRNA:INSD:BX814890.1" /note="protein tyrosine phosphatase 1 (PTP1); FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, receptor/non-receptor type (InterPro:IPR000242); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="protein tyrosine phosphatase 1" /protein_id="NP_974127.1" /db_xref="Araport:AT1G71860" /db_xref="GeneID:843516" /db_xref="TAIR:AT1G71860" /translation="MATGKTSSAANLFTGSTRFDLSSADSPPSKLSLSSDQLNHCHQA LGVFRGKIQNPDSIAHEFTGLQANRMWPSELLLNSTVAMNSVNVEKNRYSDVVPFDKN RIVLNPCKDSSAKGYVNASLIKTSESESISQFIATQGPLPHTMEDFWEMVIQQHCPII VMLTRLVDNNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTSLMLRNLEVNYKETE DQPMSVLHIQYPEWPDHGVPKDTVAVREILKRLYQVPPSLGPIIVHCRYRKNWNILCD T" ORIGIN 1 aatcacaaac ctttaccctt tcttctcggg gccaatcaaa aacttcaatt aaccagaaaa 61 ggtcagattc tccgccgcct cacacgacgg gcaacttcag ttcctgccgt cgcgttagat 121 cccgccgtca atcggtcatg gcgaccggta aaacctcttc cgccgcgaat cttttcactg 181 gctcgacgcg ttttgattta tcatccgctg attcgcctcc ttcaaaactc tctctctcct 241 ccgatcagct caaccactgc caccaagctc tcggcgtttt ccggggaaag atccaaaatc 301 ctgactcgat cgctcatgag tttaccggtt tacaggctaa taggatgtgg ccatcggagc 361 tgctgctaaa cagtacagtg gctatgaaca gtgtcaatgt tgagaaaaac agatacagtg 421 atgttgttcc atttgacaag aacaggattg ttctgaatcc atgtaaagac tcatctgcaa 481 aaggatatgt gaatgcaagc ttaattaaga cgtcggagtc tgagagtatt tctcagttca 541 tagctacgca aggtccttta ccacacacga tggaggactt ctgggagatg gttattcagc 601 agcattgccc aatcatagtg atgctcactc gattggttga taataatagg actgttaaat 661 gcggggacta ttttcaagac gaagatggac ctagagaatt tggcaacata tctcttacaa 721 caaagtggat aaagactact gacacttcat tgatgttacg gaatcttgag gttaactaca 781 aggagacaga ggatcagccc atgtccgttt tgcatattca gtatccagaa tggcctgatc 841 atggagttcc caaggataca gtggctgtcc gtgaaattct aaaaagacta tatcaagtac 901 cacctagtct cggcccaatc attgtgcact gcaggtatag gaagaactgg aacatactgt 961 gcgatacata acacaatcca aagaattctt gctggcgata tgtctgcgtt ggatcttgct 1021 aaaaccgtgg cactatttcg caagcaacgc attggcatgg ttcaaaccat ggatcaatac 1081 ttcttttgct acaatgctat tgttgatgaa ttagaagatc taaccgcggg gacaaatgct 1141 ggaacgagtt cctaaagctg aagggttcgt ctgcttagag agggaaaaag gcttctaccc 1201 aactatatca atttcgtaat gtgattcaag aagaaacccg cgtgaatctc tacattcaag 1261 acttttcaat ttctgtaaat ttccatatct gataggtttc attgttactt ttgttgtgga 1321 aatgctgatt aaaaagcaaa tgaagtcgcc aatgcgagat tcttcaaaga ctatgaattc 1381 ggtttgattt ggtttgaagt gtaaaagaac cgaagattaa tttaatggtt tagacttaac 1441 cgagtttctt tcgaaaataa ataaatca //