Dbfetch
LOCUS NM_180654 1541 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana BRCT domain-containing DNA repair protein (ATXRCC1), mRNA. ACCESSION NM_180654 VERSION NM_180654.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1541) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1541) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1541) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1541) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1541) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_180654.2. FEATURES Location/Qualifiers source 1..1541 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1541 /gene="ATXRCC1" /locus_tag="AT1G80420" /gene_synonym="homolog of X-ray repair cross complementing 1; T21F11.25; T21F11_25; XRCC1" /note="Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis." /db_xref="Araport:AT1G80420" /db_xref="GeneID:844382" /db_xref="TAIR:AT1G80420" CDS 225..1286 /gene="ATXRCC1" /locus_tag="AT1G80420" /gene_synonym="homolog of X-ray repair cross complementing 1; T21F11.25; T21F11_25; XRCC1" /inference="Similar to RNA sequence, EST:INSD:EL314991.1,INSD:EH921575.1,INSD:EL126501.1, INSD:ES103774.1,INSD:EL982741.1,INSD:EL982957.1, INSD:EG496215.1,INSD:ES004756.1,INSD:AU228480.1, INSD:EL978113.1,INSD:EH871194.1,INSD:EL188036.1, INSD:AV540006.1,INSD:EL969451.1,INSD:EL096658.1, INSD:N37375.1,INSD:EL133191.1,INSD:EL318371.1, INSD:DR383236.1,INSD:EL982605.1" /inference="similar to RNA sequence, mRNA:INSD:AJ276506.1,INSD:BT024885.1,INSD:BX816831.1, INSD:AF324348.1" /note="ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink)." /codon_start=1 /product="BRCT domain-containing DNA repair protein" /protein_id="NP_850985.1" /db_xref="Araport:AT1G80420" /db_xref="GeneID:844382" /db_xref="TAIR:AT1G80420" /translation="MSQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTEEHNSRNAPS NKSEHAEPSSNTTEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTL LICAFPNTPKFRQVETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQD ANREKREHLSKKPEKQVEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLS QTISWLESQEEKPEPGEIKRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVK ELGKMESSSKKENSTASKEEVCKQAKSWKKIYEAELAKPGEDESTSRVACGYDSDMTV EMTEEEIELAYRNVSLECL" ORIGIN 1 gacaaattga atagtctctg atgatttcga tcaaagagaa gccacggggg gagcgctagc 61 acttaaagat ttgcaccgtt ttctctctgg ctttgtgttg tgctagatgc gatgcaatag 121 caatattttc ctggagtttc aagtaactag tggcttaggt tcataatagt gtttctttgt 181 aggacgaaag ctgtgttagt attctctcca ctgtaaagga caagatgtct cagaagcgaa 241 atcttccttc ttggatgagt tctagggatc ccgagattac tccgagtaag tctcattgta 301 agaagcctaa ggatgaagga ccaaccgaag agcacaacag tagaaatgcc ccttccaaca 361 agtcagaaca cgccgagcca agttcaaata ccactgaatt ctctaaactt atggaaggcg 421 ttgtttttgt actttcgggc tttgttaatc ctgagaggag tacactgagg tcacaagcct 481 tgacaatggg agccacctat caacctgact ggaacgctgg ctctaccttg ttgatttgtg 541 cttttcctaa cactccaaag ttccgtcaag ttgaaacaaa tggtggaaca attatctcaa 601 aggagtggat aactgagtgt tatgcgcaga agaagttggt agatatcgag caatacctta 661 tgcatgctgg aaaaccatgg aggaaaagca gtagtcccca agatgctaat cgagaaaaga 721 gagaacacct gtctaaaaaa ccagagaagc aagtagagaa aaaaacagaa acaaggggaa 781 caccatctac ctcatccaag aatagatcag cttgcaatct tgtgaaagag ccattttttg 841 ttacagaggt gaagaaatgg gccagggatg acctaagtca aaccatctca tggcttgaga 901 gtcaggagga aaaaccagaa ccaggcgaaa tcaagcgaat agctgcggaa ggagtcttaa 961 cctgcttaca agacgccata gattctcttg aacagaagca ggacattgga tcagttacag 1021 agctatggag ctttgtccct cgtgtagtga aggagcttgg aaagatggaa tcgtcttcta 1081 aaaaggaaaa ttcaacagca tcaaaggaag aagtttgcaa acaagcaaag tcgtggaaaa 1141 agatctacga agctgagcta gcaaaaccgg gcgaagatga atcgacctct cgggttgctt 1201 gtggctatga cagtgatatg accgttgaga tgactgaaga agagatcgaa cttgcttata 1261 ggaacgtttc tttagagtgt ctttagatca aacttgtttc attttgcata tgatctctta 1321 aggaattcca agaattcttg ttatactcgg tttgttcggt ttgagtagga tgttattact 1381 gataaaaatt tgaaataatc cggtctgctt ggttcggaaa gaatgtttct aattagaatt 1441 tatttatgct ggtttggatt cgattgagag atgtaatcgg ttgcaattaa taagtcggtt 1501 tgatttgata ctttttagtg tcgattgacg atgaatttga t //