Dbfetch
LOCUS NM_179644 1900 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana tubby like protein 2 (TLP2), mRNA. ACCESSION NM_179644 VERSION NM_179644.2 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1900) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 1900) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1900) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1900) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Apr 24, 2008 this sequence version replaced NM_179644.1. FEATURES Location/Qualifiers source 1..1900 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..1900 /gene="TLP2" /locus_tag="AT2G18280" /gene_synonym="AtTLP2; T30D6.21; T30D6_21; tubby like protein 2" /note="Member of TLP family" /db_xref="Araport:AT2G18280" /db_xref="GeneID:816344" /db_xref="TAIR:AT2G18280" CDS 446..1630 /gene="TLP2" /locus_tag="AT2G18280" /gene_synonym="AtTLP2; T30D6.21; T30D6_21; tubby like protein 2" /inference="Similar to RNA sequence, EST:INSD:BP851066.1,INSD:EH828846.1,INSD:EL246440.1, INSD:EL193716.1,INSD:BP585207.1,INSD:BP616226.1, INSD:EH816530.1,INSD:EL276873.1,INSD:BP597855.1, INSD:EL022330.1,INSD:BP610496.1,INSD:Z25662.1, INSD:EL318668.1,INSD:BP603386.1,INSD:BP593340.1, INSD:BP640774.1,INSD:BP666674.1,INSD:T43566.1, INSD:BP856500.1,INSD:EL245831.1,INSD:BP858437.1, INSD:BP615438.1,INSD:AV823804.1,INSD:BP601236.1, INSD:BP667510.1,INSD:EL198597.1,INSD:AU229791.1, INSD:EL213903.1,INSD:BP810190.1,INSD:BP599977.1, INSD:BP607750.1,INSD:AV563752.1,INSD:BP611949.1, INSD:BP599457.1,INSD:BP570901.1,INSD:AV814384.1, INSD:BP612247.1,INSD:BP616475.1,INSD:BP618140.1, INSD:BP618735.1,INSD:BP604482.1,INSD:EL037172.1, INSD:EL303525.1,INSD:AV561203.1,INSD:BP666790.1, INSD:BP563836.1,INSD:EL127733.1,INSD:BP639924.1, INSD:AV560390.1,INSD:BP809622.1,INSD:EL133364.1, INSD:EL102637.1,INSD:EG509835.1,INSD:EH947940.1, INSD:BP665197.1,INSD:AV813929.1,INSD:BP609008.1, INSD:EH834036.1,INSD:EL091896.1,INSD:EH830025.1, INSD:EH968924.1,INSD:EL012735.1,INSD:AV789238.1, INSD:AA650866.1,INSD:EL023618.1,INSD:BP575332.1, INSD:BP818234.1,INSD:EH828328.1,INSD:BP804938.1, INSD:EL104208.1,INSD:BP809474.1,INSD:AV548981.1, INSD:BP852422.1,INSD:BP614065.1,INSD:BP575636.1, INSD:BP864790.1,INSD:EL327108.1,INSD:EH912639.1, INSD:BU635637.1,INSD:BP616196.1,INSD:T04772.1, INSD:BP621035.1,INSD:H76882.1,INSD:BP804585.1, INSD:EH837058.1,INSD:BP583930.1,INSD:BP855303.1, INSD:BP616018.1,INSD:EL183088.1,INSD:BP564643.1, INSD:EL209319.1,INSD:R90546.1,INSD:EL072588.1, INSD:EL314622.1,INSD:EH983933.1,INSD:BP609172.1, INSD:EH814676.1,INSD:BP603770.1,INSD:BP805135.1, INSD:AV553762.1,INSD:EL327614.1,INSD:CB185508.1, INSD:BP661636.1,INSD:BP658382.1,INSD:AV557756.1, INSD:BP625573.1,INSD:BP808875.1,INSD:EH866456.1, INSD:BP804466.1,INSD:AV817339.1,INSD:BP795217.1, INSD:EH805944.1,INSD:BP562411.2,INSD:BP594709.1, INSD:BP668655.1,INSD:AV801657.1,INSD:BP601194.1, INSD:BE039260.1,INSD:AV831665.1,INSD:BP851184.1, INSD:BP605815.1,INSD:BP581772.1,INSD:BP598078.1, INSD:EL017263.1,INSD:BP606571.1,INSD:AV800257.1, INSD:EL339495.1,INSD:EL073536.1,INSD:AV784858.1, INSD:BP602025.1,INSD:EL111294.1,INSD:AV545089.1, INSD:H36490.1,INSD:BP620430.1,INSD:BP577509.1, INSD:BP859000.1,INSD:BP809632.1,INSD:AI997828.1, INSD:EL209450.1,INSD:BP663012.1,INSD:EL128991.1, INSD:BP671540.1,INSD:EL286123.1,INSD:BP609177.1, INSD:BP587591.1,INSD:BX834127.1,INSD:DR374877.1, INSD:EH926062.1,INSD:BP602548.1,INSD:BP788298.1, INSD:AV554337.1,INSD:EL305691.1,INSD:BP800582.1, INSD:BP803169.1,INSD:EH812129.1,INSD:BP607689.1, INSD:EL298144.1,INSD:EH855129.1,INSD:BP612262.1, INSD:EG504926.1,INSD:EH919898.1,INSD:EL107762.1, INSD:BP601616.1,INSD:EH887518.1,INSD:BX836852.1, INSD:BP856949.1,INSD:EH856058.1,INSD:EH804704.1, INSD:BP617633.1,INSD:BP599371.1,INSD:BP864576.1, INSD:BP635253.1,INSD:EH929610.1,INSD:BP799516.1, INSD:BP806284.1,INSD:BP602989.1,INSD:EH848499.1, INSD:EH799802.1,INSD:EL294493.1,INSD:BP829169.1, INSD:BP618094.1,INSD:BE844867.1,INSD:T43575.1, INSD:EG419157.1,INSD:EL224490.1,INSD:BP627790.1, INSD:EH838482.1,INSD:BP599394.1,INSD:BP853028.1, INSD:EL195011.1,INSD:EG419161.1,INSD:EH907351.1, INSD:BP566380.1,INSD:BP662041.1,INSD:BP598354.1, INSD:BP583791.1,INSD:BP599339.1,INSD:N37412.1, INSD:BP866767.1,INSD:EL991974.1,INSD:EH895823.1, INSD:BP611891.1,INSD:BP607247.1,INSD:EL340630.1, INSD:EL255575.1,INSD:AV792832.1,INSD:AI996570.1, INSD:BP589231.1,INSD:EL045421.1,INSD:BP611464.1, INSD:AV540167.1,INSD:BP613597.1,INSD:BE523255.1, INSD:BP614665.1,INSD:AV559724.1,INSD:EL187756.1, INSD:EH966410.1,INSD:AV543366.1,INSD:EL038240.1, INSD:EL275819.1,INSD:BP598189.1,INSD:EL213869.1, INSD:AA394871.1,INSD:BP788779.1,INSD:EH946694.1, INSD:BP806835.1,INSD:AV548686.1,INSD:BP603934.1, INSD:EH852140.1,INSD:EL101933.1,INSD:BP620928.1, INSD:EH825097.1" /inference="similar to RNA sequence, mRNA:INSD:BT008627.1,INSD:AY045773.1,INSD:BX819976.1, INSD:BT025314.1" /note="tubby like protein 2 (TLP2); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 3 (TAIR:AT2G47900.3); Has 957 Blast hits to 948 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 352; Fungi - 19; Plants - 471; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink)." /codon_start=1 /product="tubby like protein 2" /protein_id="NP_849975.1" /db_xref="Araport:AT2G18280" /db_xref="GeneID:816344" /db_xref="TAIR:AT2G18280" /translation="MSLKSILRDLKEVRDGLGGISKRSWSKSSHIAPDQTTPPLDNIP QSPWASLPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGK LTFPISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATC TDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQAQPNRRLHPKQAA PKLPTNSSTVGNITYELNVLRTRGPRRMHCAMDSIPLSSVIAEPSVVQGIEEEVSSSP SPKGETITTDKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQ LVAEIDASLDAPPEEHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPAC EG" ORIGIN 1 agagtttctc tctgccttta aacgtttcat tgaaaactat aagaaaaagc gaagacttcg 61 gatcctttct ttctcaattt gtaacaagag agagaggttc aggttcgttt tggtggtgac 121 cactccttta ttcacctacg gtgagatcgg cggcggagtc tagacgacgg cgataacgcc 181 ggtgaccgac ggaatcatgt taagatagtc actggcgaat tcgttcttct tccccggaga 241 cgacaagcat cgaagaatct gtttagagac agctatgctt gtctctgttt ctgcgttttc 301 tctttccgat cttgtctctc ggatccggtg aagaagctgc cgccgatcac atcttccagt 361 ttccagagat tctaaagctt ttgtcttttg atccttcatc gaattcattg agctatcggg 421 gagttttgtg gtatgctgaa aagagatgtc tttgaaaagc atccttcgtg atctgaagga 481 agtgagggat ggacttggag gcatctccaa gagaagctgg tcaaagtcgt ctcacattgc 541 tcctgatcaa acaactccac cactggataa cataccacag agcccatggg cttctttgcc 601 gcctgagttg cttcatgaca ttatctggag ggttgaagag agtgagacag cttggcccgc 661 tcgagctgcc gttgtctctt gtgcttcagt atgtaaatca tggagaggaa tcactatgga 721 gattgtgagg atccctgagc agtgtgggaa gctcactttt ccaatctcat tgaaacagcc 781 ggggcctcga gactctccaa ttcaatgttt tattaagagg aacagagcaa cagctacata 841 cattctctat tatggtttga tgccttcgga gactgagaac gacaaactgt tgttagcagc 901 aagaaggatt agaagagcga catgcacaga ctttataatc tccctatctg caaagaactt 961 ctcacggagc agcagtactt atgttggcaa attaaggtct ggttttctgg gaaccaagtt 1021 cacaatatat gacaaccaaa cagcatcatc cacagcacaa gcccaaccta accgaagact 1081 ccacccgaaa caagcggctc ctaaactacc tacgaatagc tctaccgtag gaaacataac 1141 ctacgagctc aatgttcttc gcacaagggg acctagaaga atgcactgcg ctatggattc 1201 tatacccctc tcttctgtta ttgctgaacc gtcagtagtt caaggcatag aagaggaagt 1261 ctcttcctct ccttcaccaa aaggagaaac catcacaaca gacaaagaga ttcctgataa 1321 ttctccaagc ttaagggacc aaccgctagt tctcaaaaac aaatccccaa gatggcatga 1381 gcagttgcag tgctggtgcc tcaacttcaa gggaagagtg actgtggctt cagttaagaa 1441 tttccagctt gttgcagaga ttgacgcttc tttggatgcg ccgcctgaag aacatgagag 1501 ggtgatctta cagtttggca aaatcggtaa ggatattttc accatggatt atcgctaccc 1561 tctatctgct tttcaagcct ttgctatatg cattagcagc tttgacacca aaccggcatg 1621 tgaagggtaa actttaaccc accgagttaa atccatctct gcaaatcatc atagaaggct 1681 tttcttatct ttaggtttca atgtatcaat ccacgaaaag ctctttgtat gtagattgtt 1741 gtagctcttt tgaactatgc tttaaatccg tatctccaaa atcactgtgt caaatgtttt 1801 atggaggtct tggttgataa gcttactgaa gttatgattg ttatatccaa tgtaatatat 1861 aaacaaaagc cattgcacaa caacaataac taatctgatt //