Dbfetch
LOCUS NM_176347 2968 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant C (CG18135), mRNA. ACCESSION NM_176347 VERSION NM_176347.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2968) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2968) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2968) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2968) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2968) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2968) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2968) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2968) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2968) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2968) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2968) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2968) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2968) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2968) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2968) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2968) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2968) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2968) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_176347.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2968 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2968 /gene="CG18135" /locus_tag="Dmel_CG18135" /gene_synonym="Dmel\CG18135" /map="75F2-75F2" /db_xref="FLYBASE:FBgn0036837" /db_xref="GeneID:40073" CDS 32..2167 /gene="CG18135" /locus_tag="Dmel_CG18135" /gene_synonym="Dmel\CG18135" /EC_number="3.1.4.-" /EC_number="3.1.4.2" /note="CG18135 gene product from transcript CG18135-RC; CG18135-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_788525.1" /db_xref="FLYBASE:FBpp0074811" /db_xref="GeneID:40073" /db_xref="FLYBASE:FBgn0036837" /translation="MGPLHLRKLRPLRVNLAPSCQGIVGRCRALSSRCITDPLPWHSW QSPAQKSQQRQKQQPLLKPPQLQPLPCGLRAIRSKCAAFVDGASITYGTGNELESGSG SSAACKPTLREFNVRLEVPLAAEERLGLTGDVKALGEWQLSRSVALESLDELNWQATV ALQSCRQLEYRYFVYVEDLSGYKQIRRWETHFKPRSLGPCTELQCSQLDVFGITSDNS DLKPQVHRGWLNHEAILQLKFNGEKMFQVHDIETFDPQHVQLKIVPVEKTAGLHVEYS KQEYGKSQLELQPTFGVPYTKGDIVIFHITLPLERMMEQHFRLECYSMSNELLGSATL VTSDLTGSEGVLHLPIKSAKNADETLARLRLPYVAVQPYRYSPLDFKNTYAHYWPKSW PNLDVGHRGNGKSYIADAPAERENTIASFLSAHEHHADMIELDVHLTADGVPVIYHDF GLRTAPPGKQISRPDQLEYVLIKDINYELLKRLRIFSVIAGQVREYPSHNAEPRMEHR IFPTLVEVLEKLPKSLGIDVEIKWPQRRQGGGSEAEQTIDKNFFADKVIHQVIQKGCG RPIIFSSFDADMCTMLRFKQNVFPVMFLTQGETKKWQPFLDLRTRTFIAAVNNAQAFE LAGTAPHAEDFLGENASEMLRKAKDLGQIAVIWGDDCNSKERVQYFTRIGATATCYDR SDLFMPEGKREAFFKSPALMAEFAAQCRI" ORIGIN 1 gtgctaattt attcaatatt tcggttaatt tatgggtccg ctccacttac gtaaactgcg 61 cccgctgcga gtgaatttag cgcccagttg tcaggggatc gtcggcaggt gtagggcact 121 cagcagtcgt tgcatcaccg atcctctgcc gtggcattca tggcagtcgc cggcccagaa 181 gtcgcagcag cgacaaaaac agcaaccgct gcttaaaccg cctcaattgc aaccgcttcc 241 gtgcggcttg cgcgcgattc gctcaaagtg tgccgccttc gtggacggag cctccatcac 301 ctatggaacc ggaaacgagc tagagtcggg atctggatcc tccgccgcct gtaagcccac 361 tctgcgggag ttcaatgtgc ggctggaggt tcccctggcc gccgaggagc gactggggct 421 taccggcgat gtgaaagccc tcggcgagtg gcagctgtcc agaagtgtgg ctctagaatc 481 gctggacgag ctcaactggc aggccacggt ggcccttcag tcctgccgcc agctggagta 541 ccgctacttt gtctacgtgg aggatctctc tggctacaag cagatccgcc gttgggaaac 601 ccatttcaag cccaggtccc tgggaccctg tacggagcta cagtgcagcc agttggacgt 661 cttcggtatt acgtcggaca actccgatct aaagccgcag gtgcaccgcg gctggctgaa 721 ccatgaggcc attctgcagc tcaagttcaa tggcgagaag atgttccaag tccacgacat 781 cgagaccttt gacccccagc acgtccagct gaagattgtg cccgtggaga agaccgctgg 841 cctgcatgtg gagtactcca aacaggagta cggcaagagc cagctggagc tgcagcctac 901 tttcggagtg ccctacacca agggggacat tgtcatcttt cacatcacgc tgccgctgga 961 gaggatgatg gagcagcact tccgcttgga gtgctacagc atgtccaacg aactcctggg 1021 cagtgccact ctggtcacct cggacctgac tggcagcgag ggagtgctcc acctgccgat 1081 taagtcggcc aagaatgcag atgagaccct ggccaggctg aggcttccct atgtcgcggt 1141 gcagccttac cgctactcgc cgctagactt caagaacacc tatgctcact actggcccaa 1201 gagctggccc aacctggatg tgggtcatcg tggaaatggc aagagttaca ttgcagacgc 1261 tcctgcggaa agggagaaca ctatcgcgtc tttcctgagc gcccatgaac atcacgcaga 1321 catgatcgag ttggatgtcc atttgactgc tgatggtgtg cctgtgattt atcacgattt 1381 cggactgcga actgctccgc ctggcaagca gatcagccgc ccagaccagc tggagtacgt 1441 gctgatcaaa gacataaact atgagctgct caaaaggctg cgcatcttct ctgtgatcgc 1501 aggccaagtg agggagtatc cctcgcacaa cgccgagccc aggatggaac accgcatatt 1561 cccaacgctg gtggaggtac tggagaagct gcccaagtca ctgggcattg atgtggagat 1621 taagtggcca cagcgtcgcc agggcggagg atcagaggct gagcaaacaa tcgacaagaa 1681 cttcttcgcc gacaaggtga tccatcaggt gatccagaag ggctgtggca gaccgataat 1741 cttctccagc ttcgatgctg acatgtgcac gatgctgagg ttcaagcaga acgtcttccc 1801 agtgatgttc ctcacgcagg gagagacgaa gaagtggcag ccgttcctgg atctgcgaac 1861 acggaccttt attgcagccg taaacaatgc tcaagctttc gagctggctg gcacagctcc 1921 acacgccgag gacttcctgg gcgaaaatgc atcagaaatg ctgcgaaaag ccaaggatct 1981 gggccaaata gctgtgatct ggggcgacga ttgcaactcc aaggagcggg tgcagtactt 2041 cacccggatc ggggctaccg ccacgtgcta cgatcgcagt gatctcttca tgccggaggg 2101 caagcgcgaa gccttcttca aatcacccgc actgatggcc gagttcgcgg cccagtgccg 2161 gatctaagaa atggggttac tagaatgaaa cgggcgggta caattaagct atggctaatc 2221 attaggcttt ttaagttagc ttgtatattt atttaaacac taaccgggaa aagagaaatg 2281 tgggaagctt taaagtggtt gggtaatttg tagtttctcg ttgcccaacg gaaacaacga 2341 aacggagacc cataaataaa tcatctctat gcacgttaag ccgtcatttg gcaaaattac 2401 acatgcaaaa aaggaattcc cccaaagtta agtagcacca caaaagacaa tgggaagaaa 2461 gcgaagcgac gaatcgataa taacaaaaat atatacacct acattacgtg ctttaaatca 2521 atctatctat acctcaatgc aaaacttgcg aaagagatgt tgctaataag cttttgctat 2581 ttaaatcgaa acaacaaatt actattaaaa tgtggacgga acagatatcc acaccgatgc 2641 ttgtgtaact tgtgcagaaa cactctattg taaattagaa gacatcctat ttaactgttg 2701 taaatctaat ttgctgcgtc tttgtacaat ttgaaaattt acgtttgttt tcaaaaattg 2761 tttataatgt atacattcgt gtaaaccatt tttaagaatc aattgtatcg acttaagggt 2821 aaacacaaat atttaaagaa gtcgcttaca cctatccaac tctaagaaaa agcaataata 2881 tattttgatc tatattacaa tcagttttat gacaaaaacc aaaagtgatt gattcgtatg 2941 taaataaaat cacactaaat attttcat //