Dbfetch
LOCUS NM_175964 3679 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster chorion factor 2, transcript variant B (Cf2), mRNA. ACCESSION NM_175964 VERSION NM_175964.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3679) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3679) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3679) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3679) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3679) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3679) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3679) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3679) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3679) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3679) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3679) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3679) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3679) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3679) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3679) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3679) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3679) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3679) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jan 16, 2013 this sequence version replaced NM_175964.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3679 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3679 /gene="Cf2" /locus_tag="Dmel_CG11924" /gene_synonym="BcDNA:GM09668; CF-2; cf2; CF2; CF2.5; Cf2_II; CG11924; Dmel\CG11924" /note="Chorion factor 2" /map="25B1-25B1" /db_xref="FLYBASE:FBgn0000286" /db_xref="GeneID:33692" CDS 320..1768 /gene="Cf2" /locus_tag="Dmel_CG11924" /gene_synonym="BcDNA:GM09668; CF-2; cf2; CF2; CF2.5; Cf2_II; CG11924; Dmel\CG11924" /note="CG11924 gene product from transcript CG11924-RB; CG11924-PB; Cf2-PB; chorion Factor-2; chorion factor 2" /codon_start=1 /product="chorion factor 2, isoform B" /protein_id="NP_787978.1" /db_xref="FLYBASE:FBpp0088591" /db_xref="GeneID:33692" /db_xref="FLYBASE:FBgn0000286" /translation="MIKSTTNPQEQRLPRPEDQSPAPPPPPPSSATTSTAAPATPTHQ VATVIANMDTLKTAFLPNLSMDPNVHVSPHYCPMCHQQFERPQHVADHMQLCHGITLN AQGAIATLDGGHPQAQQHPKLSHPCFNCDEKFGNAVDLDEHHRLAHQTPAFLSRCLMC SIYGIHSATQQPNEYKCTQCGSICTTAMLAAGQQGFMEQQEAAVTPDDQLPAMAPRDM RLTPEEQHHQQQLQAEHHHQQQHQQQQQQQQQQQELLEQQQREMQEQAQQQQVHHHQQ DQDLAGDQVALKVPPLTVKLNKNANGGAIVSHPQVIIKEEPLSLSDSGDVVNSVPVYA IQANPGVPAPASSGVLVGTQTVPADLAHKIRHKCPDCPKTFKTPGTLAMHRKIHTGEA DATPKERPYTCSYCGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRT HTGEKPYTCPYCDKRFTQRSALTVHTTKLHPL" ORIGIN 1 acgttgccat cgtagtttcg atgccagtaa tcgatacttt ttgttgtagt tgtacatttt 61 tcgccaaaaa taataataaa agtgaaaaat tttttttgtt aatatacgtt tatttgttgt 121 acaaaggaga aaatgttatt aaactgattg gccgccccag cattttcgtg acccccgctc 181 caaatacaac aaaatcgaac ggccgccagc aacaacaagc gcatatcgcc ttctttaacc 241 gccaattgct cctgctcctg cccactaacc aagtcaaacc aaaagaagcg attactctcc 301 aagcgccagc ggaagtgaaa tgataaagtc caccacgaat ccacaggaac agcgtctgcc 361 acgccccgag gatcagtcgc cagcgccgcc gccgccgccc ccctcctcag ccaccacctc 421 caccgccgcc ccagccacgc ccacgcacca agtggccacc gtgatagcca acatggacac 481 cctgaagaca gcctttctgc ccaatctcag catggacccc aatgtgcacg tgtcgccgca 541 ctattgtccc atgtgtcacc agcagtttga gcgaccgcag cacgtcgcgg atcacatgca 601 gctgtgccac gggatcacgc tgaacgccca gggagccatt gccacgctgg acggcggtca 661 tccgcaggca cagcagcacc ccaagctcag ccacccctgc ttcaattgtg atgaaaagtt 721 tggcaacgcc gtcgatttag acgaacacca tcggctggcc catcagacgc ccgccttcct 781 gtcccgctgc cttatgtgca gcatctatgg catccactcg gccacccagc agcccaacga 841 gtacaaatgc acgcagtgcg gctccatttg caccaccgcc atgctggctg ccggacagca 901 gggctttatg gaacagcagg aggcggcggt gacgcccgac gatcagctgc cggcaatggc 961 gccccgtgat atgagactga cgcccgagga gcagcaccat cagcagcaac tgcaggcgga 1021 gcaccaccat cagcaacagc accaacaaca acaacagcag cagcagcagc agcaggaact 1081 gctggagcag cagcagcgtg aaatgcagga gcaggcgcaa cagcagcagg tgcaccatca 1141 ccagcaggat caggatctcg ccggcgacca ggtggcgctg aaggtgccac cactcaccgt 1201 caagctaaac aagaacgcca acggtggcgc cattgtgtcg catccgcagg tcattatcaa 1261 ggaggagcca ctcagcctga gcgacagtgg tgatgttgtc aactctgtgc ctgtctatgc 1321 catacaagcc aatcccggtg tacccgctcc ggccagttcg ggtgtgctag tcggcacaca 1381 aacggtacct gccgatctgg cgcacaagat ccggcacaaa tgtccggatt gtccaaagac 1441 cttcaagacg cccggcacgc tggccatgca ccgcaagata cacacaggcg aagcagacgc 1501 cacgcccaaa gaacgcccct acacgtgctc ctactgcggc aagtccttca ctcaatcgaa 1561 tacactaaaa cagcacactc gcatacatac aggagagaag ccgttccact gcggttactg 1621 cgagaagtcc ttcagcgtga aggactatct gaccaagcac atacggacgc acaccggcga 1681 gaagccgtac acctgtccgt attgcgacaa gcgcttcacg cagcgcagcg ccctcactgt 1741 gcacacgacc aagctgcatc cgctctaggg aaggccgggc ggtggccgcc agttacccgt 1801 tcctgcccca gccgctcctc ctcctcctac tcatcctcca aatccttctg gtcctggtgc 1861 gccgccgccg ttgtccgccg acacggatac agatcccaag aagccatctg cggcggctgc 1921 ggcatcggct taggacgaac tgcagcggaa acgggatgag caaaccataa atgaaagacc 1981 atttcaaaga cgagacacac tcacgtagac gggagttatg caactgcagc ggatgcaaca 2041 actgcaacca acgactggca aatctcttcg cagtgctgct agattaaatt actaaattag 2101 atacatacct tcagttcggt taacacagaa gcagaagcag aaacagattt gtactaaatt 2161 agcatacagt tcgtagaatg tttaagttat tgcaatcgat ttttgattct tattactatt 2221 tggttatgta gatgttttgc aatttttatt ttttatacac ctatgtatat cgtatataat 2281 attttgttat tctatgagat tttatatggt gactccatag cgcacactca cttacgcgcg 2341 gcgctataca gacacacaca caaacacaca cacacccaaa actacacaca acacacatat 2401 attatttata aagagagaga aaatattttt actcatatac tttgtggcaa tattattttt 2461 attacttcct taaattgttt gtaaatgtta ctgaaagcag caaaacaaaa agaaaaaggt 2521 aaactcatgt ctacgcgcaa aacttaaatt atttttataa attatacatc tattttattc 2581 gaactcaaaa caacacaaaa ttatttattt ttacgtgaaa gaacgttttt caaaatttcg 2641 actcgtagcg gaaatgacaa aggaccaata cgaaatttag tcatttctca attatttgca 2701 cacgagcagg atctcgtttg ttttggcttt aaaaatttat ttacttttaa ttaactaaat 2761 gatctaatca ttttagcttg tttttattga tgaatgttaa ccattgttta ttttttaaat 2821 tatttaagtt gaaagcgctg cttttgtttg ttaaactaaa ctaaactaaa cagtgagatt 2881 gtataaaact ttaaaaaaaa aaggaataac gaaaaacata actaagaaat taattttaca 2941 aaatttgcat tttttaacgc aaaacaaaaa gtatttaagg caaatcgaaa tgagaaatct 3001 acgctaaacg caacacagct ttatgcgcca aactagaaga ttaaaaaaaa attaacataa 3061 cgatctacac aattgatact tttgataaaa agaaagcttc aagttgtttt tgtaatatat 3121 ataaatatgg attgatcatt tttacgacta cttaaacgcg tttttttaaa ccagcaaatg 3181 attacttgca agagttgtac gtactaaaat cgactaaaac ttaaactaaa actgtagcaa 3241 aaccaaaacc atgtacattt ttataacata gtgttatata attataaagt atgcaaatat 3301 ataaacctgt atctaatatt aatgcataat acactcaaac aaattgtcta cctaatggca 3361 catagcacag caacaaacga tgcgcagcgc atgtaaaacc aaaataaatt ctaagtacta 3421 aactattgta attctttaag ttttaaataa accgtgaaga gttgacgatc aaaagcaaac 3481 agcaaaacgc taaatgcagc aaaaaaaaaa gaaacgccta actaaccgca acactgaaaa 3541 aaaaaaccaa ttaactctgc tgtaagtgat taccaatgaa tgagtcatgt tgaatgcgat 3601 acgtactaaa tagcgactaa ctattagtat tagatcttag ccacgaatcc aaaaacgaag 3661 ccagacaaca gacacacag //