Dbfetch
LOCUS NM_170389 3463 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster choline transporter-like 2, transcript variant B (Ctl2), mRNA. ACCESSION NM_170389 VERSION NM_170389.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3463) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3463) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3463) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3463) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3463) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3463) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3463) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3463) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3463) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3463) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3463) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3463) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3463) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3463) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3463) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3463) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3463) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3463) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_170389.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3463 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3463 /gene="Ctl2" /locus_tag="Dmel_CG11880" /gene_synonym="CG11880; CTLH2; DmCTL2; Dmel\CG11880" /note="Choline transporter-like 2" /map="98F10-98F12" /db_xref="FLYBASE:FBgn0039637" /db_xref="GeneID:43440" CDS 699..3089 /gene="Ctl2" /locus_tag="Dmel_CG11880" /gene_synonym="CG11880; CTLH2; DmCTL2; Dmel\CG11880" /note="CG11880 gene product from transcript CG11880-RB; CG11880-PB; Ctl2-PB; choline transporter (CTL)-like protein 2" /codon_start=1 /product="choline transporter-like 2, isoform B" /protein_id="NP_733268.1" /db_xref="FLYBASE:FBpp0084741" /db_xref="GeneID:43440" /db_xref="FLYBASE:FBgn0039637" /translation="MTESVELMNKYGEPLRYDRNFTGPRQRDRSCTDVPCLLLFVLFL GGWAFIAQYAIRNGDLNKLLVPTDSFNRKCGMDSGVLNKKNLFFFDLNQCIDPLVPIT GCDTPQVCVETCPRETFVWDTMKDKQSFAELHSRLICLSEEHKAQIRTKSDIQDAINQ NQCARWYIKSAPFLKRCLFEFSQGVCDYIPSFLLNGGRSRRELHMLPGNATTEVQMQA DVMYQKMTDAQALVVPQANGKQTPVDEEPIIQCKRRLNEAVIKEKMMQTDTRLAKLVG NMVAHFYNGTNDAQLLGEKIVEDLVNSWSIVLVACFCTLVASLIYIALMRWLSAPILW FSIFGVLIGLLVGIYFSVKQYIHWENTPTVPVHGLNLHSTVKNVLQNQNTWLYLSIFV GVCFVVILLLVIVLRKRIRIAIALTKEGSKAVSSVISTVFFPIFSWILFIAAIAFAIG VGLYLGSIGDPSFRMVRQLTKSGEVTTEDCVCEGPAINYTVGGSCKPEVFQQYCSVRL TSFFQNRNPCLNTTCSFDSINNPIEIKWAIFYNVFGFLWLSFFISAFSYMVLASTFAR WYWTFKKRDVPYFTLTRAFFQTAVYHLGTVAFGSLILAIVRLIRLVLEYIHEKLKKYD NAVTRAILCCMRCFFWLLETFLKFLNRNAYIMCAIHGKNFCSSAADSFNLIMRNFLRV VTLDQVTDFLFFLSKLLLTAGAGASTYYFLDNNPSIIRLNYIAVPTTVVVIAAFLITS VFFGVYSTAVDTLFLCFLEDCERNDGSPEKPFFMSKQLMKILGKKNNLPPRQRRGK" ORIGIN 1 agtattattt cgattgtgaa ggagtttact tcgtagaaag tcaagtgctc gccgtttaat 61 tagcgcaagt gcaagtgagt cgcagtacgt gagcttgggg gcttaatttc atgcgcccgc 121 tccacaacaa aaacaagcga aacgaaaaga gttgcatgca cagaaattcg aattcggtcg 181 aaactgcaag gtgttattat aacgggaatg gccagtgctc gttatcgggt gaaaacgatt 241 aggattgtgc aattaacaaa agtgtgccgt gctgctcttt tcacaatcca atccaaccca 301 atccccaact cccccacccc caatccccaa gtggcaccac acaaacacta gcacataaac 361 acttatgctg cctttatgct tgcagcccca ctcgagctct tttatgtatg tatgtacata 421 tttatccaac gaatgcaagt gaccgacgtc caaagagcaa cgtacgggat acggagctcc 481 gacaaaggct tcccgctttc agtggtccgg tgactttcgc cggagtagtg actccgtccc 541 aggaaaccag ctaaacaaaa agcccccagc cgctcgtaaa aaagtgtcat gagacaataa 601 aggaacttta agaaagaaag gaaaagcgac gagaagagtg gagctccttt gttacatctc 661 tggaagaatc gttcggctcc gaagcaaagt agagagcgat gacggaaagc gtggagctga 721 tgaacaagta cggcgagcca ctgcgctacg accggaactt cacgggaccg aggcagaggg 781 atcgcagctg cacggatgtg ccctgcctgc tgttattcgt cctcttcctg ggcggatggg 841 ccttcatagc ccaatacgcc atcaggaacg gcgatctcaa caaactgctg gtgcccacgg 901 actcctttaa ccgaaagtgt ggcatggact ccggagtgct gaacaagaaa aacctattct 961 ttttcgactt gaatcagtgc atcgatccac ttgtacccat cactggatgt gacactccac 1021 aggtttgtgt ggagacttgt ccccgagaga cgttcgtctg ggacactatg aaggacaaac 1081 aaagttttgc ggagctgcat agtcgcctca tctgcttgtc ggaggagcac aaggcgcaga 1141 ttcgcaccaa atcggacatt caggatgcca ttaaccagaa ccagtgcgca cgctggtaca 1201 tcaagagtgc tccattcctc aaacgatgcc tcttcgagtt ctcgcagggc gtgtgtgatt 1261 atattccctc gtttctgcta aatgggggaa ggtcgaggcg ggagctgcat atgttgcccg 1321 gaaacgccac cacagaagtt caaatgcagg ccgatgtcat gtaccagaaa atgacggatg 1381 cccaggctct cgttgttcca caggcgaatg gcaaacagac tccagtggac gaggaaccga 1441 tcatccagtg caagcgcaga ctcaacgagg ctgtcatcaa ggagaagatg atgcagaccg 1501 atacgaggct ggccaagctc gttggtaaca tggtggccca cttctacaat ggcacaaacg 1561 acgcccagct tttgggagaa aagattgtcg aggatcttgt caactcctgg tcgatcgttt 1621 tggtggcttg cttctgcacc ctggtagcct cactgatcta catcgctcta atgcgctggc 1681 tctcggctcc gattctctgg ttctccatct tcggcgtgct tatcggcttg ctggtgggta 1741 tttacttctc cgtaaagcag tacatccact gggagaatac gcctacggtt cccgtacacg 1801 gcttgaatct acactccacg gtcaagaatg tcctgcaaaa ccagaacacc tggctctacc 1861 tgtccatctt cgtaggcgtg tgcttcgtgg ttatcctgtt gctggtaatt gtgctaagaa 1921 agcgcatccg gatagcgatc gccctaacca aggagggcag caaggcggtg agcagcgtga 1981 tcagcaccgt gttctttccc atcttctcct ggatactctt cattgccgcc atagcgtttg 2041 ccattggcgt gggcctgtat ctgggctcaa ttggcgatcc ttcgtttaga atggtgcgac 2101 agctgacgaa aagtggcgaa gtgaccaccg aggactgcgt ctgcgaaggt ccagccatca 2161 actacacagt gggcggatcc tgcaagccag aagtgttcca gcaatattgt agcgttcggc 2221 tgacctcatt tttccagaac cgaaaccctt gcttgaacac cacctgcagc tttgactcga 2281 ttaacaatcc aatcgagatt aagtgggcca tcttctacaa cgtctttggc ttcctctggc 2341 tgagcttctt catctccgcc ttcagctaca tggtgctggc ctcgaccttc gcccgatggt 2401 actggacctt caaaaagagg gatgtgccct acttcaccct tacaagggca ttctttcaaa 2461 ctgctgtcta ccatctgggc accgtggcct ttggttcgct catcctggcc atcgtccggc 2521 tgatccgtct ggtgctggag tacatccacg agaagctgaa gaagtacgac aatgcggtga 2581 cacgagccat cctctgctgc atgcgctgct tcttctggtt gctggagacc ttcctgaagt 2641 tcctcaatcg gaatgcctac atcatgtgcg ccattcatgg caagaacttc tgctccagtg 2701 ccgcggactc gtttaatctg attatgagga acttcctgcg tgtggtgacg ctggatcagg 2761 tcacggactt tttgttcttt ttgtcgaaac tgctgctaac cgcaggggcg ggggcgtcca 2821 cctactactt cctggacaat aatccgagca ttattcggct aaattacata gcagtgccca 2881 ccacggtggt ggtaattgcc gcctttctca taacgagcgt gtttttcggt gtgtactcga 2941 cggcagtgga cacactgttt ctgtgcttcc tggaggactg cgagcgcaac gacggctcac 3001 cggagaagcc gttcttcatg tccaagcagc taatgaagat tcttggcaag aagaacaatc 3061 tgccgccgcg tcagcgccgc ggaaagtagg agacagcagt gcaaattata actttattga 3121 agtaaaacat atatatatat atttattata gcccaaaacg aaacgatcgg ggttgtgagc 3181 gattgctcaa ccggctgcaa ttgggtttgc attaaatgca cgctcctttg ccaatactct 3241 taatctttaa tctagtgtat ataatacgcc agtatccgta tccatatgta aagttttttg 3301 tgcggctaga catgtgatag gcgcggacca taaagaccaa aagtaatacc atacaataac 3361 atgtatacag agacacaaaa gtacatatct cacattcatg aagtttaagt taacgataat 3421 tattataatt ttcgaattta ataaaaatga attcattgaa gac //