Dbfetch
LOCUS NM_169203 3627 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster doublesex (dsx), transcript variant B, mRNA. ACCESSION NM_169203 VERSION NM_169203.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3627) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3627) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3627) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3627) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3627) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3627) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3627) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3627) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3627) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3627) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3627) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3627) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3627) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3627) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3627) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3627) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3627) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3627) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3627) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3627) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3627) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3627) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3627) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3627) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_169203.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3627 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3627 /gene="dsx" /locus_tag="Dmel_CG11094" /gene_synonym="CG11094; Dmdsx; Dmel\CG11094; Dsx; DSX; dsxF; DSXF; dsxM; DSXM; Hr; ix-62c" /note="doublesex" /map="84E5-84E6" /db_xref="FLYBASE:FBgn0000504" /db_xref="GeneID:40940" CDS 1264..2547 /gene="dsx" /locus_tag="Dmel_CG11094" /gene_synonym="CG11094; Dmdsx; Dmel\CG11094; Dsx; DSX; dsxF; DSXF; dsxM; DSXM; Hr; ix-62c" /note="CG11094 gene product from transcript CG11094-RB; CG11094-PB; dsx-PB; hermaphrodite; intersex-62c; double sex; doublesex" /codon_start=1 /product="doublesex, isoform B" /protein_id="NP_731198.1" /db_xref="FLYBASE:FBpp0081257" /db_xref="GeneID:40940" /db_xref="FLYBASE:FBgn0000504" /translation="MVSEENWNSDTMSDSDMIDSKNDVCGGASSSSGSSISPRTPPNC ARCRNHGLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQTALRRAQAQDEQRALH MHEVPPANPAATTLLSHHHHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAA AAAPSAPASHLGGSSTAASSIHGHAHAHHVHMAAAAAASVAQHQHQSHPHSHHHHHQN HHQHPHQQPATQTALRSPPHSDHGGSVGPATSSSGGGAPSSSNAAAATSSNGSSGGGG GGGGGSSGGGAGGGRSSGTSVITSADHHMTTVPTPAQSLEGSCDSSSPSPSSTSGAAI LPISVSVNRKNGANVPLGQDVFLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEAS RRIEEGQYVVNEYSRQHNLNIYDGGELRNTTRQCG" ORIGIN 1 tttaaattat gttattttta gcatggttta cttatggaaa agagcatagt taagggttta 61 caatgaaaac ggtcaaataa gggtatccat atctggtacc aaaccaattt gctttctccc 121 agttgatgtg cagtgcatcc agcagtcgag caggttggat gctcgcactc gtttcttttt 181 tcgcggtgca gcaaccagag tgcaaataca aatagcaaga gcgttgcgtc gccagtcggt 241 gggcccgtct ctgtgccaga aacacatgct cagttttagg tccgcccgtc cgcctgaatg 301 tccgtgtatc tgtccgctgt cttttggtct gctagtcgga ctggtactgg tccgagtgtt 361 agtatcgtgc acggggagct ttagctttgt ggccgcaacc agtttgctgg catcgatcgt 421 cctttgcagg tcgtgcatgt cgcgttggcg tctcgcgccg tccgcgttcc gtgctcgaaa 481 tcacaatctc aagctgaagt gaaaagaact ggagcggatt cggtacaaaa ttctgtgcga 541 tagtttttag ttgctgtgcg aggtccgaaa atatctctaa aatgcgttga cctacaggga 601 accagatcga gccgcgagtg ccatgctaaa caaagtcgtt tgcggctaca gcttgtacgg 661 tttaagataa caaataaaag aaataaattt ttaccggctt cacactctca ctctcggtcc 721 acgaagcact cctgaccgtc tcgtacccag ccgatcggac tccccgtatc tcatcgagtt 781 cgccgagtgc tagtgctata ttctctcact ttgcttgcat aaccaagagc aaagcacacc 841 tcgcggaggc agatcgcaga tgcagataca gatacatata ctgctagtgg tctagtagtg 901 gacctggaga tactctagcg agtgcatgca attggcattg tacctggtgc ttctaaaatc 961 aaaagaaagc agcaaaattt aaaagtgaga cctaaagtcg aaatattttc caatactctt 1021 cggacttacc caataactta agcttaccaa taatttatgc aagactaaat tgcaataaag 1081 gcatataatc cctaacaata taactctcat tgaaaaaatc ttaaataatt taaaccccag 1141 tgaattaaac agcaaaagac agttaataga cacagaaaat gctaataaaa atagcataat 1201 aaaagcacgg ttacataaac ttagacgctc gaacatttac ataggatatc agaagctgga 1261 atcatggttt cggaggagaa ctggaatagc gacacgatgt ccgactcgga catgatcgac 1321 tcaaagaacg acgtctgtgg cggagcctcc agttccagcg gcagctcgat ttcgccgagg 1381 acaccaccga actgcgcccg ctgccgcaat catggcctaa agatcaccct aaagggacac 1441 aagcggtact gcaagttccg ctactgcacg tgcgagaagt gccgactgac ggcggaccgc 1501 cagcgggtga tggctctgca aacggccttg aggcgagccc aggcgcagga tgagcagcgg 1561 gcgctgcaca tgcacgaggt gccgcctgcc aatccggcgg ccacgaccct cctgagtcat 1621 caccatcatg tcgcagctcc cgctcatgtc cacgcccacc atgtgcacgc ccatcacgca 1681 cacggaggac accactcgca tcacggacat gtcctgcacc accagcaggc agcggcggcc 1741 gcagcagcag ctccgtcggc tccagcctcc catctgggtg gctccagcac ggccgcttcc 1801 agcatccacg gtcacgccca cgcgcaccac gtccacatgg cagctgctgc agccgcctcg 1861 gtggctcagc accagcacca aagccaccca cactcgcacc accaccacca ccagaaccac 1921 caccagcatc cgcatcagca accggccacg cagaccgccc tgcgatctcc gccgcacagc 1981 gaccatggtg gcagtgtggg tccggccacc agcagctccg gcggtggagc acccagttcc 2041 agcaatgcgg cagcggccac ctcgagcaac ggatccagcg gcggtggagg aggaggcgga 2101 gggggcagct cgggtggcgg ggcaggaggt ggtaggtcat cgggaacatc ggtgatcact 2161 agcgccgatc accacatgac cacggtgcct acgcccgccc aatcgctgga ggggtcctgc 2221 gactcgtcgt cgccctcgcc gtcgtccact tccggtgcag ccattttgcc gatctcagtt 2281 tccgtcaatc gaaagaacgg cgccaatgtg cccttgggcc aagacgtttt cctagactat 2341 tgccaaaagc tattagaaaa attccgctat ccttgggagc tgatgccact catgtatgtg 2401 atattaaagg acgcagacgc caacattgaa gaggcttccc ggcgaatcga agagggccaa 2461 tacgttgtga atgagtactc ccgtcaacat aatttgaata tctatgacgg gggtgagctg 2521 cgcaacacaa cgcggcaatg tggatgataa tttttcatta actagagtaa cgaatactac 2581 tttgccccga tatttattat tgttcagcat cacatattag cttaatgctt cggtgaaatc 2641 gcgcgaattt aacttttata acttagagtt gagtaactta gagttttatg gagcaaaacc 2701 tctgtaaata aatcgaattt atcggtaaac taaagcgcga cttggactat cttcaatcaa 2761 caagccaaat atgtcgatgt gtgacagccg ttctacgcgt cagctttctt caatcaacat 2821 taccccgtgc tgagatgtct ggcctcaatg ttaataatct caatctacaa tcaacattct 2881 cttctcttca atcaacaatc cgcaaacgga tctaatcaac aatcaacata gcccttgccg 2941 ccaacgaata atataatcaa aggacaaagg acaaaatgta gtaaacgttt ttaaaaaata 3001 ttcgaaatac gcacgccaaa tcaacgatca acatttcaac acgttcgcat cacaaatctg 3061 cgcatcggtt gtatagcttt agtttaacct tatttaagtt tggcattact cagtttattg 3121 ggctaatcac agtctaatta aagccattga aagcgcctca cttcagtcat ttatgctttt 3181 attgtttact taagtactta actgaatcta agtacaaaat aatgtttctt tcgtaagcag 3241 cactaaattg atcaacaaag gggatcgaga agaaaactag gatatacaca ctcattcgaa 3301 taggcataca agccaatctc aaatttcttc tttgcgtgtg aatttgtatc ttagcaaggc 3361 aattgcatag taacccttga agaaatgata actactttcc gggggtctgg gtatcaaaac 3421 tgttgtgaga tagtgcacaa attataaata tatttaagtt agtgtttcat cgatgtcttg 3481 cgaaactcta attgtaatat tgcattacaa cgaaaattct tattgacatt gtaaaatatt 3541 gttacgacct taagtaagat ttagcccaac ggaatattat aaaaaggata aacctgaaat 3601 gtcagaaata aactattttc cttaaac //