Dbfetch
LOCUS NM_169063 3122 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster phosphatidylinositol 4-kinase II alpha, transcript variant A (Pi4KIIalpha), mRNA. ACCESSION NM_169063 VERSION NM_169063.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3122) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3122) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3122) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3122) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3122) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3122) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3122) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3122) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3122) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3122) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3122) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3122) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3122) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3122) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3122) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3122) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3122) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3122) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3122) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3122) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3122) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3122) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3122) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3122) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_169063.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3122 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3122 /gene="Pi4KIIalpha" /locus_tag="Dmel_CG2929" /gene_synonym="CG2929; Dmel\CG2929; Pi4KII; PI4KII; Pi4KIIa; PI4KIIa; PI4KIIA; PI4KIIalpha; PI4KIIbeta" /note="Phosphatidylinositol 4-kinase II alpha" /map="83B1-83B2" /db_xref="FLYBASE:FBgn0037339" /db_xref="GeneID:40670" CDS 355..2487 /gene="Pi4KIIalpha" /locus_tag="Dmel_CG2929" /gene_synonym="CG2929; Dmel\CG2929; Pi4KII; PI4KII; Pi4KIIa; PI4KIIa; PI4KIIA; PI4KIIalpha; PI4KIIbeta" /EC_number="2.7.1.67" /note="CG2929 gene product from transcript CG2929-RA; CG2929-PA; Pi4KIIalpha-PA" /codon_start=1 /product="phosphatidylinositol 4-kinase II alpha, isoform A" /protein_id="NP_730944.2" /db_xref="FLYBASE:FBpp0089178" /db_xref="GeneID:40670" /db_xref="FLYBASE:FBgn0037339" /translation="MSGARDQTDPPLLQLEDEVDLIGDFAKDQPPPRNQLSPLLNGFE STSNQLTTKVEINTVGMGKRKTRRRGKKAREPMLLSVDDEDDEEEAQEERNHTNGLPP GEESAGGDAVIQKPQLDNLVMHYDDQIDDEDGEEAVLLKRSSNPRNQRLKGSAEDSID SSSQQPPIICHIAPAKVASSALTSPLKTTSHTALARHPHDEADDICLVPEIDFEGMST DAGSDNRESQPLLGGGNASHGSRISELLGGLGRGHDHVEFVSNTFGDDPLFSEIVAKA EGAIENGVLPERIYQGSSGSYFVKDASHQCLAVFKPKDEEPYGRLNPKWTKWMHKLCC PCCFGRACLIPNQGYLSESGASLVDRKLNLNVVPKTRVVRLVAESFNYARIDRQKAKL KKRIKEHYPSAHFNRMSLPLKTGSFQLFVEGYKDADYWLRRFESEPLPPSVAKSFQLQ FERLVVLDYIIRNTDRGNDNWLIKYVAPKITTQVGGTGGRTMHGVVTPKLPNALGASK IVDLNEPPQASPKPTTGGRPSNHLAGGAATSAQQDSSSLASSEDEPSSRSPPTSEPDW NVVNSAFIRIAAIDNGLAFPFKHPDSWRAYPYHWAWLPQAKIPFSEEIKEQVLPQLSD MNFVEEICTELLYLFQQDRGFDKRLFERQMSVMRGQILNLTQALRDGKSPVQLVQMPA VIVERSSGSRFFSFTQRFQNKSPFFSWC" ORIGIN 1 ccgcgaattc tactcgtcag ctgtttgatt tgtcaaccat ttttcgcttc gtgttcttag 61 cgaaaattaa atcgaacgcg taattcactt gttacatttg cggagtgcat gcccgaataa 121 tataagcata ttgtgcagga acatgcgagc ggaggaaaag cggaggagca gataacagaa 181 ccaagcgacg cccaaaaagt cgcggataga agcgcaagaa gaagctgcag cacagcgcgg 241 gcctttgttg ttccgtcagc tgcggattga gggcaacggc acctcccact catccagccc 301 tcttgaccca cgcccaatca cccacgtgcc tgccaccccc tgctcagtgc gaacatgagc 361 ggcgctcggg atcagacgga tcccccgctg ctccagctcg aggacgaggt ggatctcatc 421 ggggactttg ccaaggacca acctccgccc agaaaccaac tgtctccgct tttaaatggc 481 ttcgagtcga caagcaacca gttgaccacc aaagttgaga tcaacaccgt cggcatgggc 541 aaacgcaaga caaggagaag agggaaaaag gcgcgggaac ccatgctact gtcggtggac 601 gacgaggatg acgaggaaga ggcgcaagag gagaggaacc acaccaacgg gctgccgcca 661 ggcgaggaga gtgccggcgg cgatgctgtt attcagaaac cgcaactgga taacttggtc 721 atgcattacg acgaccagat cgacgacgaa gatggcgaag aagctgtgct gctgaagaga 781 agctcaaacc cgcgcaacca aagactcaaa ggtagcgctg aggatagcat cgacagcagc 841 agccaacagc caccgattat ttgtcacatc gcacccgcga aggtagcctc atctgcattg 901 acatctccgc tgaaaaccac ttcgcacact gctctcgccc gtcatccgca tgacgaggcc 961 gacgacatct gcctggtgcc agaaatcgac ttcgagggca tgtccacgga cgccggcagc 1021 gacaaccggg agtcacagcc gctcttgggg ggaggcaatg ccagtcacgg aagtcgcatc 1081 agcgagcttt tgggcggact aggacgcggg cacgatcatg tggagtttgt atcgaacaca 1141 tttggcgatg acccgctttt ctcggagatc gtggcgaagg cggagggggc catcgagaat 1201 ggtgtgctgc ccgagcgcat ttaccagggt agcagtggtt cctactttgt caaggatgcc 1261 tcccatcaat gcctggccgt atttaagcca aaggacgagg aaccctatgg cagactgaat 1321 ccgaagtgga cgaaatggat gcataagctg tgctgcccgt gttgttttgg ccgagcttgc 1381 ttgattccca atcaggggta cctctccgaa tcaggagcca gcttggttga tcgaaaactc 1441 aatctgaatg tggttccaaa gacgcgagtg gtcagattgg ttgccgagag ctttaactac 1501 gcacgcattg atcgacagaa ggccaagctg aagaagcgca ttaaagagca ctatccgtcg 1561 gctcacttca accgaatgag ccttcctcta aagactggct cctttcagct cttcgtggag 1621 ggttacaagg atgcggacta ttggctgcgg cgctttgaaa gcgaaccctt gccgccttca 1681 gtggcgaagt cgttccaact gcagttcgag cgcctcgtcg tgctcgatta tatcatacgc 1741 aacacggacc gtggcaacga caactggctg atcaagtacg tggcccctaa gatcacgacc 1801 caggtgggag gcactggcgg cagaactatg cacggagttg tgacccccaa attgcccaat 1861 gcgttggggg cttcaaaaat cgttgaccta aacgagccgc cgcaggctag cccgaaaccg 1921 actactggtg gtcgcccttc gaaccaccta gcgggtggag cagccacaag tgcacagcaa 1981 gatagcagca gtttggccag cagcgaagat gaaccctcgt cgagatcccc ccctacgtcg 2041 gaacccgatt ggaatgtggt gaactcggcc ttcattcgga tcgctgccat cgacaatggt 2101 ctcgcttttc ccttcaagca tccggactct tggcgagctt atccctacca ttgggcctgg 2161 ttgccacagg cgaaaattcc gtttagcgaa gaaatcaagg agcaggtgct gccgcagttg 2221 tcagatatga actttgtaga ggagatctgc acggagttgt tgtacctctt ccagcaggat 2281 cgcggctttg acaagcgtct cttcgagcgc cagatgtcgg tgatgcgggg ccagattcta 2341 aatctcacac aggcactgag ggatggcaag tcgccggtgc aactggtcca gatgccagcg 2401 gtgattgtcg agcgatcaag tggcagtcgt ttcttctctt ttacgcagcg cttccaaaat 2461 aagagccctt tcttctcttg gtgctaaatg accatggagc agcccctgcc gaccccacca 2521 aaaatcaaat cgagcagccg gttactacag tctcatcttt ttcatcatgt atatgcgctt 2581 agttgttgtc tagtatactt ccaaatcgta atcacggagc acggagccta gaaatgtatt 2641 ttttgccaaa aaactcaaat ggtcatattc aataattaat tacttgtatt actagtttct 2701 gggatgactt acccatacca tggttacata tttaggaaat atcttatgtt tgtcaagtgc 2761 ttgtatagtc aattgttttc gcataaagta tgcagaaatc agaaggagat cattttaaag 2821 cactcgctca agtggtttat acatttcttt attatttgaa tgaaatcata atgcatatag 2881 gtgaaaaata caaagctcat ttacattcgt tagcacttga gttaaggtcg cccattgtta 2941 ttagcattag cacatattta atggtttcct ttcctccaaa ctaaaactca atttatttca 3001 ttatgtacgg ttcgcaacta aatagtgtgg gaatatatat atatatcaac caaaatacat 3061 atgtaaagta tttaaaaggc aagccttata taaaagatat taaaacatta taaaagttta 3121 ac //