Dbfetch
LOCUS NM_168839 2987 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein (CG32228), partial mRNA. ACCESSION NM_168839 VERSION NM_168839.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2987) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2987) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2987) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2987) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2987) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2987) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2987) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2987) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2987) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2987) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2987) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2987) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2987) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2987) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2987) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2987) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2987) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2987) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jul 15, 2014 this sequence version replaced NM_168839.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..2987 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene <1..2987 /gene="CG32228" /locus_tag="Dmel_CG32228" /gene_synonym="Dmel\CG32228" /map="77B1-77B1" /db_xref="FLYBASE:FBgn0052228" /db_xref="GeneID:326202" CDS 1..2748 /gene="CG32228" /locus_tag="Dmel_CG32228" /gene_synonym="Dmel\CG32228" /note="CG32228 gene product from transcript CG32228-RA; CG32228-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_730504.1" /db_xref="FLYBASE:FBpp0074605" /db_xref="GeneID:326202" /db_xref="FLYBASE:FBgn0052228" /translation="MERLHYPIALNPNAKYLPNSISNVLYSIQKFDQSTLAWPTCQRK RNVPIGKAFTSPPEVPLAGTATCVIQKRRQCASRSNAKEVQKNTFYQILQASQDQPCI QQSSRIKRKSTDPKFKSDFKDDSIYNDIYDIVRSHTQYKRLPQLEKQPEQQKPFSLNT PAVEVYKVRPFATEIKKPRSKTANSTAKTNKLREKTNELSDSKRTTHQSKSKLTESKS SRRYTNKLREKTNELLVSKRTTHQSKPKLAESKSSRKNTNKHREKTNQLSDSKRTTNQ TKPKLTASKSSRKKTNKLQEKTNEILNSERTTPHFKPKSSQNQFLKYETRENKQKGNS KSEKHKATQQLWPFRGRGADRIPQRSIYNDQFNVGSEIKSNFSTTQLPDPDGQKIQEV STEEQGNMDEKPEQKTERASDTKRNSNEESGRRKRKSKLKLKLFNANNTDTIYVVQGR NSKGLTGVPLLNKRSGTEIYRIKEMKLNPFKEQEDFSTLKPQKTDSYILGRSKMRFNS NRTREKKISTIREKSLVESTTDTDTTANNIQKNFKSTSVKSNEQEIQSSTAPVKEEIV SKPRKMYPINRILNVINESRSIGNPDEHSEILVRRSSSSSSQISSQKQKPKDIFEENT AKLKRKTKTTTNVSQIKDKSRFFRHNSAPPTPTNSIETEIEALPVYPYEEHSDDNEDE TSYRSGSIYSADRRTLERKSLLERLNSKIRKINLDTTSQMYQQRLFKVKQFLNRHSMI DNTDTSSIDIEGIPDSDLLMYPYTEIYENKTTVTKVNQPKVSEAIKENSKPILRPPDD TRKIKNEKPVRKKSACIICRTIRGNHGAKEAPFMEQMRKEKRRRELLTYRAKIEEPHI KSFNILPKDPKNKTKAINMHDLSKKELYTLESRINIFGTASSMSSFPKKSNLITFPSE T" ORIGIN 1 atggagaggc tacattatcc aattgcttta aatccaaatg ccaaatacct acccaactcg 61 atttcgaatg ttttgtacag tattcaaaaa tttgatcaaa gtacgcttgc ttggccgact 121 tgccaacgga aacggaatgt cccgattgga aaagcattca catcgccacc ggaagttcct 181 ttagccggaa ctgccacctg cgtgatccaa aagagaagac aatgtgcatc cagaagtaat 241 gctaaggagg tccagaagaa taccttctat caaattcttc aagccagcca agatcaacct 301 tgcattcagc agagttccag aatcaaacga aaaagtaccg accccaaatt taaatccgat 361 tttaaagacg acagcattta caatgatata tacgacatag tgaggtctca cactcaatac 421 aaaagattac ctcaacttga aaagcagcct gagcaacaaa agccattttc tttgaataca 481 cctgcggttg aagtctataa agttcgtccg tttgcgaccg aaataaaaaa accaagaagc 541 aaaactgcta attcaaccgc taagacaaat aaacttcgag aaaaaacgaa tgagctttcg 601 gattcaaaaa ggacaactca tcagtctaag tcgaagttaa cagaatcaaa gagttcaagg 661 agatatacaa ataaactaag agaaaaaact aatgagcttt tggtttcaaa aaggacaacg 721 catcagtcta agccaaagtt agcagaatca aaaagttcga ggaaaaatac aaataaacat 781 agagaaaaaa cgaatcagct ttcggattca aaaaggacaa ctaatcagac taagccgaag 841 ttaacagcat caaagagttc gaggaaaaag acgaacaaac ttcaagaaaa aacgaatgag 901 attctgaatt cagaaaggac aacgcctcac tttaagccga agagctcgca gaatcagttc 961 ttaaaatatg aaacaagaga aaataagcag aagggcaatt caaaatccga aaagcacaaa 1021 gcaacccaac agttgtggcc atttcggggt agaggtgcag atcgaatccc acagagaagt 1081 atatataacg atcaattcaa tgtgggttcc gagattaagt cgaatttttc caccacccag 1141 cttccagatc cagatggtca aaagatccaa gaggtttcta ctgaggagca gggaaacatg 1201 gacgaaaagc ctgaacagaa aactgaaaga gctagtgata caaaaagaaa ttccaacgaa 1261 gaatcaggca ggagaaaaag aaagtccaag ctaaaactaa aactatttaa tgccaataat 1321 actgatacaa tatatgttgt tcaaggaaga aattcaaaag ggctgacagg tgttccgctt 1381 ttaaataagc gttctggaac ggagatttat agaatcaaag aaatgaaatt aaatccgttt 1441 aaggaacagg aagacttctc cacattaaaa ccgcaaaaga cagattctta tattttggga 1501 agatcaaaaa tgcgttttaa ttcgaatcgg acacgcgaaa agaaaatctc tacgattaga 1561 gagaaatccc tagtggaaag cacaactgat actgatacaa ctgccaacaa tatacagaaa 1621 aattttaaat caacgtcagt aaaatctaac gagcaggaaa ttcaaagcag tacagcgcca 1681 gtaaaagaag aaatagtttc caagccaaga aaaatgtatc ccattaatag aattctaaat 1741 gttataaatg aatccagaag tatcggaaat ccggacgaac atagcgaaat attggtaaga 1801 agatcatcat ctagctcttc acaaatttcc agtcagaaac agaagccgaa ggatattttt 1861 gaagagaaca ctgctaagtt aaaaaggaaa actaaaacga ctactaatgt gtctcaaata 1921 aaggataaat caaggttttt tcggcataac tccgcaccgc caacgccaac aaattctatt 1981 gaaaccgaaa tagaagcgtt accagtttat ccttacgaag agcactcaga tgataatgag 2041 gacgagacct cctatagaag cggcagtatc tactcagcgg atcgaaggac cttggaacgc 2101 aaaagccttc tggaaaggtt aaactcgaag attcgaaaaa tcaatcttga tacgacgtcg 2161 caaatgtacc agcagagatt gttcaaggta aagcaatttc ttaaccgtca cagcatgatc 2221 gataatacag atacgtcctc aatcgacatc gaaggaatac ccgatagcga tttgctgatg 2281 tatccgtata cagaaatata tgaaaataag acgaccgtca caaaggtgaa tcagccaaag 2341 gtatctgaag caattaagga aaattcgaag cccattttaa gacctccaga tgatactcgt 2401 aagattaaaa atgaaaagcc tgttcggaaa aaaagtgcct gcattatatg ccgaactatt 2461 agaggcaatc acggagcaaa ggaagcacct ttcatggagc agatgagaaa agagaaaagg 2521 cgtcgggaac tattgacata cagagcaaaa atagaagagc cccatattaa atcttttaac 2581 atcctgccca aggatcccaa gaataaaact aaagccatca acatgcatga tctcagcaaa 2641 aaagaacttt acactctgga aagtaggata aatattttcg gcactgcgag tagtatgtct 2701 agtttcccta agaaaagtaa tttaattact tttcctagtg aaacttaatc atattactca 2761 tatccaaaat tgtatatcta tttattttcc caggaagagt agttctaata tatgtttcca 2821 aaaaaaaaaa aacaatgagt catttgatgc atttctctat atttcatgcg aatttggcaa 2881 gaaagtgcaa tcgttgttga cagatccgca tgcttataaa gccaattaaa taataaatgc 2941 atcttttgtc aaaatgaact tgcgctgcat tactatagct gacattt //