Dbfetch
LOCUS NM_168610 3277 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant A (CG13457), mRNA. ACCESSION NM_168610 VERSION NM_168610.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3277) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3277) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3277) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3277) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3277) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3277) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3277) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3277) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3277) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3277) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3277) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3277) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3277) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3277) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3277) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3277) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3277) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3277) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 31, 2011 this sequence version replaced NM_168610.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3277 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3277 /gene="CG13457" /locus_tag="Dmel_CG13457" /gene_synonym="BcDNA:AT15860; BcDNA:AT16542; Dmel\CG13457" /map="71B5-71B5" /db_xref="FLYBASE:FBgn0036482" /db_xref="GeneID:39649" CDS 386..3154 /gene="CG13457" /locus_tag="Dmel_CG13457" /gene_synonym="BcDNA:AT15860; BcDNA:AT16542; Dmel\CG13457" /note="CG13457 gene product from transcript CG13457-RA; CG13457-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_730028.1" /db_xref="FLYBASE:FBpp0075406" /db_xref="GeneID:39649" /db_xref="FLYBASE:FBgn0036482" /translation="MSRSPRPEEAKEKNMTWSQSLKANQAKESPLSVNRSPASGSQQK VKWAKCRTIAIAVTDNSSNAKRARGGYCCNCDYCTQDIRGVYQNRYGTTPCCNCKGSW DMGYHQQCCAYGDLCGETPLPHQGTQFGISYNMYPRPTCRRLVTDLNTEVFCRHWRPK IERSLSPKERKGCGPQVKCQEKRNPSKIGKCINNKKLECNVKREATSIVQNKCRKPEK AIKIQQKKRHESTKDHGQKKCKPIDSHFASLKGMPCKAQPSKVCTDELKDEINSQSYQ DYFNLYNQQNCKPLDPYPYSTYTRMAGKDETKLPKLKDTSYSDRITDHYTENSYSFED KTEYDCLCCKERTAHYQLEDIGSGASTPDGIPYQCSEEKDSYTNGYACSEERRYITPD ASLRAKSHIERNFHRSGEVTNANRTHAQQSKSLMAKDNNCKAVRRQRREHCEERVQPD SKCGDRRIRAHSVQRSVLAQSRGPTSYTSIDPQPPSAKHETKDTQTECLWRERPTQTE RQIRMDKGCQVCRERNQFRDRTNPASAIPSHSKNFPYNSMATMQSECAEAVMKGTYFD EEYCAPVISKLESSSNSKPLEQFSRKRTDYVHVHEEGHPGLLDCGQDSPRTPREIQHI TYKQSVSQQVQTPPYSPRTPLLSYRQHKSSKNEYITHTPQAGTNSRSQSPYRSSPVED LSSSSHKSSGKVYDTQTRQVVANSRSNSPYRNNPAEDLSLSPQLQRSLCQYIQNMPGH IDDASFQVDSPSCTNDIPSRCVVETRPECVHCEGEHCEQSCKQHSPRSCMSSSPRQIS VLETVCEKRTRTVTFEDEKGGQTKEEHTKESCSSRIDWERALKYHTSDHGDETDYTGP SSTCRSSSSAEHTCNESTYDDDFASCDESQPQTIHMRIPPFNGCPCMYQTYLNLATMC QNEGGGFI" ORIGIN 1 cagccttaaa catcaaagaa aaataccgat gaaatcaaaa cgaatatatt ttctgtgttc 61 attgattgcg agcacgccga ataaagtcta tggagaacaa gaccggtgaa tttacttact 121 gaaacgacag gagcgagtct cggtcgagga acaccaacgg atctacataa agaacactca 181 ggtaacgcag gtaagggaac tcttccgccg tccggtggtt agagtttccg gttccacctt 241 gataaaacca aaagcgacgg gttcattttc ctctgggaaa atccaacaaa ctctccagaa 301 ggtggaagtc ctaaacgtga ggatcggcaa tgagttaaat aggttagagc gctttcgtaa 361 tcattttctg gaagtcaaag aagctatgag ccgatctccg cgtccagagg aggcgaagga 421 aaaaaacatg acttggagcc agagcttgaa ggcgaatcaa gcgaaagaga gtcctctgtc 481 cgtcaatagg agtcctgcat ccggttctca gcagaaagtt aagtgggcca agtgccggac 541 catcgcaatc gcagtcacgg ataattcatc aaacgccaaa agagccaggg gaggttactg 601 ttgtaattgt gattattgta ctcaagacat ccgaggtgtg taccaaaaca ggtatggaac 661 tactccctgc tgcaactgca agggcagctg ggacatgggg tatcatcaac agtgctgtgc 721 ttacggtgat ctctgtggag agaccccatt accccatcag ggtacacaat ttggaatatc 781 ttataacatg tatccgcgtc caacttgcag aagattagtg accgacctaa atacagaggt 841 attttgccgc cactggcgtc cgaaaatcga acgttcttta tcaccaaagg agcgaaaggg 901 ttgtggacct caagttaaat gccaggagaa aagaaatccc tctaaaattg gaaagtgcat 961 taataataaa aaactagaat gtaatgttaa gagggaggct acttcaatag ttcagaataa 1021 atgtagaaaa cctgagaaag cgataaaaat tcaacagaag aagaggcacg agtctaccaa 1081 ggatcatgga caaaagaaat gcaagccgat agacagccat tttgcgtctt tgaaaggaat 1141 gccctgtaaa gctcaaccat ccaaggtttg cacagatgaa cttaaggatg aaatcaattc 1201 ccaaagttat caagattatt tcaatctgta taatcaacaa aattgcaagc ctctggatcc 1261 gtatccgtat tcgacataca caagaatggc gggtaaggat gaaacgaaat taccaaaact 1321 taaggatact agttattcag ataggataac ggaccattat acggagaact catattcatt 1381 tgaagataaa actgaatatg attgcttatg ctgcaaagaa agaactgctc actatcaatt 1441 ggaagacatt ggatctggcg cttcaactcc agatggtatt ccatatcagt gtagtgaaga 1501 aaaagattct tataccaatg gttatgcttg ttctgaggaa aggcggtaca tcactccaga 1561 tgcaagccta cgagctaagt cccatatcga aagaaacttt catagaagcg gtgaagtcac 1621 aaatgcaaat cgcacgcatg cccagcaatc caaatccttg atggcgaagg acaataattg 1681 taaagcagta aggcggcaaa ggcgggagca ctgcgaggag cgtgtgcagc cagattcgaa 1741 gtgtggtgat aggcgaataa gagctcattc agttcagcga tcagttttag cccaaagcag 1801 aggacccacc agctatactt cgatagatcc tcagcctcct tcagccaagc atgaaacaaa 1861 ggacacccag acggaatgct tgtggcggga gaggcctacg caaacagagc ggcagatcag 1921 gatggataaa ggctgtcaag tgtgccgaga acgcaaccag tttcgggatc ggaccaatcc 1981 tgcatcagca attccatctc attccaaaaa ctttccctat aattcaatgg caaccatgca 2041 aagtgaatgt gctgaggctg tgatgaaagg cacctatttc gatgaagaat attgtgctcc 2101 tgtcatatcc aaactcgaat cttcgagcaa tagtaagcca cttgaacaat tttccagaaa 2161 aagaacagat tacgttcatg tccatgaaga gggacaccct gggctattgg attgcggaca 2221 agatagtcca agaacaccaa gagaaattca gcacattacc tataagcagt ctgtttcgca 2281 gcaggtccag actcctccat atagtccacg gacaccactg ctatcttata gacagcataa 2341 aagttctaaa aacgagtata ttacccacac tccacaagct ggcacaaatt cccggagcca 2401 aagtccatat agaagtagtc ctgtagaaga tctatcgtcg agttctcata aaagttctgg 2461 aaaagtttat gatactcaga cccgtcaagt cgtcgcaaat tcccgaagca acagtccata 2521 tagaaataat ccagctgaag atctatcgtt aagtcctcaa ttacaacgct ctctgtgtca 2581 gtacattcaa aatatgcccg gacatattga tgacgcgtct ttccaagtgg attcccccag 2641 ctgcaccaat gacataccct cgagatgtgt ggtggagact cgacctgaat gtgttcattg 2701 tgaaggagag cattgtgaac agtcctgtaa gcagcatagc cccagatcgt gtatgtcttc 2761 ttccccaaga caaatttcag ttttggagac cgtctgtgaa aagcgcacgc gaacagtgac 2821 cttcgaggac gagaaagggg gccagaccaa ggaggagcat acgaaggaaa gttgtagcag 2881 tcgcatcgat tgggagcgcg ccctcaaata tcacacatca gatcacggcg atgagacgga 2941 ttatacggga cctagctcca cttgcagatc cagcagctct gcggagcaca cgtgcaatga 3001 gtccacctac gatgatgact tcgccagctg cgatgagtcg caaccgcaga cgattcacat 3061 gcgaatacct ccgtttaatg gttgtccctg catgtaccag acctacttga atctggccac 3121 tatgtgccag aacgaaggtg gtggcttcat ttaatgagag tcccttatcc gagataatcg 3181 cgcccgtcgt tgcattaaat ctttatttat ttttgacaat cttatatttt tacaatttcg 3241 ataacccagc caaacaataa atttgagtta acataat //