Dbfetch
LOCUS NM_168399 3531 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster defective proboscis extension response 10 (dpr10), transcript variant C, mRNA. ACCESSION NM_168399 VERSION NM_168399.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3531) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3531) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3531) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3531) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3531) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3531) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3531) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3531) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3531) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3531) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3531) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3531) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3531) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3531) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3531) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3531) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3531) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3531) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_168399.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3531 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3531 /gene="dpr10" /locus_tag="Dmel_CG32057" /gene_synonym="BcDNA:RE37920; CG14158; CG14159; CG32057; CT33762; Dmel\CG32057; Dpr-10; Dpr10" /note="defective proboscis extension response 10" /map="67D9-67D10" /db_xref="FLYBASE:FBgn0052057" /db_xref="GeneID:39180" CDS 418..1644 /gene="dpr10" /locus_tag="Dmel_CG32057" /gene_synonym="BcDNA:RE37920; CG14158; CG14159; CG32057; CT33762; Dmel\CG32057; Dpr-10; Dpr10" /note="CG32057 gene product from transcript CG32057-RC; CG32057-PC; dpr10-PC" /codon_start=1 /product="defective proboscis extension response 10, isoform C" /protein_id="NP_729593.1" /db_xref="FLYBASE:FBpp0076039" /db_xref="GeneID:39180" /db_xref="FLYBASE:FBgn0052057" /translation="MLTLWTALFCCLTGLAVCYQRQSVSNNNHNNAEAKPTHAPPSHY PHGHKWNEPYFDLTMPRNITSLVGKSAYLGCRVKHLGNKTVAWIRHRDLHILTVGTYT YTTDQRFQTSYHRDIDEWTLQIKWAQQRDAGVYECQISTQPVRSYSVNLNIVDLIDAE TSDIMQQYYNDDAFYIAENRVYQSSNDEFAGMFGPIQTVAVPTATILGGPDLYVDKGS TINLTCIIKFSPEPPTHIFWYHQDKVLSEETSGGRLKFKTIKSEETKSILLIYDADLL HSGKYSCYPSNTEIASIRVHVLQGERPEAMQTNAAPAAVALACWSCHFGQATQAVRVI STMVAALVLLEACSSLLLQSGGGGGCPGGGSPAGGMPTRVREIREKPLTNSLLDPKIP STTSAERVNNGSRNAR" ORIGIN 1 ttcagtttca gcgcgacatc gacggtgaac gaaaggcgaa ggcgcggaaa agcgcgtgaa 61 aatccgaata aaaagttgag ggaaatgtga ggcccaaata cgtgaggcgc gacattttcc 121 ggactatagt gtatgtgtgt gtgtgtgcat gtgcgtgtgt ttctgtgact cgaggctaga 181 gagtatgaag ctaatagaaa ggaagactta aaaaagtgtt gtgagtgaaa aaaacgagtt 241 caaaacaaac atatattgcc gtagatcaaa actcgcaaag ccaagtgcga attgatagga 301 caaaggcaag cctgataaag tgaaagaaaa aagaatcgaa ggagaatttg aagcagagtg 361 caaaggttgt tgctgcagcc ctaaaaaata accacaaatc gagtgggtca tcgcaagatg 421 ttgaccctgt ggacggcact tttctgctgc ctgacggggc tggccgtgtg ctaccagcgg 481 caatctgtaa gcaacaacaa tcacaataac gccgaggcga agcccaccca tgcgccaccc 541 tcgcattatc ctcatggcca caagtggaac gagccgtact ttgatctcac gatgcccagg 601 aacatcactt cgctggtggg caaatccgca tatctgggct gtcgtgtcaa gcatcttggc 661 aataagacgg ttgcctggat acgacatcgt gacctgcaca tcctcaccgt gggcacctac 721 acctacacga cggatcagcg tttccagacc tcctaccatc gggacatcga cgagtggacc 781 ctgcagatca agtgggccca gcagagggac gccggagtct acgagtgcca aatatccacg 841 cagcctgtgc gcagctattc cgtcaacctg aacatcgtgg acctgataga cgccgagacc 901 agcgatataa tgcagcagta ttataacgat gacgccttct atatagccga gaatcgggtg 961 taccagtcca gtaacgatga gttcgccggc atgtttggac ccatccagac agttgcggtg 1021 cccacggcca ccattctggg aggacccgat ctgtatgtgg acaagggcag caccataaat 1081 ctcacttgca tcatcaagtt cagcccggag ccaccgaccc atatcttctg gtatcatcag 1141 gataaggtgc tcagcgagga aacttcgggc ggccgactga aattcaagac catcaagtcg 1201 gaggagacca aatccatttt gctcatttac gatgcggatc tcctgcactc tggcaaatac 1261 tcatgctatc cttcgaacac ggagatagcc agcatacgcg tccatgtcct tcagggcgag 1321 cgacccgagg cgatgcaaac gaacgcggca ccggccgctg ttgccctggc ctgttggtcc 1381 tgtcactttg gccaggccac gcaggcggtc agggtaatta gcacaatggt ggcggcactt 1441 gtattgttgg aggcctgctc ctcgctgctc ctgcagagtg gtggcggagg tggatgtcct 1501 ggaggaggat cgcccgcagg aggaatgccc actcgagtca gggagatacg ggaaaaaccg 1561 ctcacaaatt ccctgcttga ccccaagata ccctcgacga cgtccgcgga gcgtgtcaat 1621 aatggcagca ggaatgcacg gtgataaatt aatgtcgccc agttggaatt ccaccgccaa 1681 tgcagccccc gagtgcagct gaaatgattt atactccaag ttacaggagc atcgggagcc 1741 gaagcaggag cagcagcatc tgaggtcctt ccactcgagc tgcatgtaat acctatctga 1801 aaaatcaact aattatgcta atgatggaag gagccgcgac gctgctcctg gaactgctcc 1861 tcctgctcgg tggcaagttg taagtaagcg tgtttctaat taagtgggct ggggattagt 1921 tagttaggcg gaaatcggag ccatgtacat aaacttctca cgtaaattgc cagcacacta 1981 gcgaaactag ctaaatggaa agcatttcga acgaatcatc aaattagaga actatattca 2041 agtggtttgc ttgtagagcc atggctagaa gtttaaataa ataataaagt aaatggaggg 2101 caggggcgtt ttggagctag tagagattta aaaacagtca ttaaagtgtc tatgacctaa 2161 ggtatcgcat aatttgttct atagctataa ggcaaatgaa acataatttg tatatagtgt 2221 agcacttgac ttctgttttt gaatatcttc ggatttctga agtaccccca ttagtaacat 2281 aagtatatac atacctagcg aaagtttact cagatcgttg taaatactat tgggattcgt 2341 tcttgattta tctgtgtgtt gcccttgggt taccctgtat agcctagagt ttaagcaatg 2401 tacatactta gagatacaaa gtagctaact gtttcgacac gaacttcttc gaaggttcct 2461 aaacaaattt ttttaacaac tttacatgtc ccatggtctc cctcaataat ctatgggaac 2521 tcggagaatg catgagaaat tcctgccaaa aaacccgctt cggtttgaag tgcgactttc 2581 cgggctggca atttatttag aagaatttcg aatttctcca agtcatgtgg gcagttcctg 2641 ttcccattta ccatatacca actccaagca attgctgcga gttcattgct ctccgagtcc 2701 agggaaattt agagccaccc agttcggcat gtccggttgc atttatatgg cctgtcccac 2761 cggaaaaaag gggcaaaaga cgaagacgaa gacacaactg gcaagtcact tttcactctt 2821 gtcaacaaaa tatttgcatt tctatttcgg tccgaggccg tcgaatgtgt tcacgttggg 2881 ttcgagttcg tcttgaagga ctttggccgg gaaaccgggc tcgtcttcct gtgccacatt 2941 taaaaatgta tgggttctac ggccggtaaa tggggctaag tttaactgat caaaattgta 3001 aataaacctg catatatacc atatgaataa actataaatt gtactcaagt attcgtgtgg 3061 tagtcataca ttacatatac gaaaacacaa acataagaat gcacagtgct agcaaatcgg 3121 acatgaatat atatatagat atggatttat atacgtatat ggatgtatcg atattaaaaa 3181 tgtaaaccca acgcatgcaa aattagtcgc gacatgtaaa tgaatgttta atgggtaaat 3241 taatgttgcc ataaaaggga caggaaaaaa accatgaata taattgcaat taagcaaata 3301 aaatgaaata tatgttataa gcataataag gggaaaaata gcgagtatta taacagaagc 3361 cgaaaagcag aaagcggaaa taaaaacaaa ctctgttgac ttttgttgca aacaaaatgg 3421 caacgcatta taaagattat gaaattgttt ttaattttta agcgagtagc cacgtaaaca 3481 tgaaaatcgg aatgaaaaat ttcaataaag tttttttagt tattaccatc c //