Dbfetch
LOCUS NM_168301 3116 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster orb2, transcript variant B (orb2), mRNA. ACCESSION NM_168301 VERSION NM_168301.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3116) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3116) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3116) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3116) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3116) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3116) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3116) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3116) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3116) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3116) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3116) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3116) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3116) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3116) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3116) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3116) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3116) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3116) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_168301.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3116 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3116 /gene="orb2" /locus_tag="Dmel_CG43782" /old_locus_tag="Dmel_CG43113" /old_locus_tag="Dmel_CG5735" /old_locus_tag="Dmel_CG5741" /gene_synonym="anon-WO0140519.222; CG43113; CG43782; cg5735; CG5735; Dmel\CG43782; Orb2; Orb2A; Orb2B" /map="66E4-66E5" /db_xref="FLYBASE:FBgn0264307" /db_xref="GeneID:39018" CDS 422..2536 /gene="orb2" /locus_tag="Dmel_CG43782" /old_locus_tag="Dmel_CG43113" /old_locus_tag="Dmel_CG5735" /old_locus_tag="Dmel_CG5741" /gene_synonym="anon-WO0140519.222; CG43113; CG43782; cg5735; CG5735; Dmel\CG43782; Orb2; Orb2A; Orb2B" /note="CG43782 gene product from transcript CG43782-RB; CG43782-PB; orb2-PB; cg43782 gene product from transcript cg43782-rh" /codon_start=1 /product="orb2, isoform B" /protein_id="NP_729428.1" /db_xref="FLYBASE:FBpp0303902" /db_xref="GeneID:39018" /db_xref="FLYBASE:FBgn0264307" /translation="MDSLKLPKANSATSSASGSNSNLSGSTSASASAATSPTSSGTAV GGILSGAPKSPPGLGSSTPISVRFNANEESLDDILQSFHHSKHSPSGGASGGGDASPT SNLLGMKNNGLGLVVGNCDSLSSSPSQPQMHAGSASLFGNDEVSLRNNFMQAGGFFNR KSCGGLPNLNLNKPPQLHQQQHQQQHQQHQQHQQQQQLHQHQQQLSPNLSALHHHHQQ QQQLRESGGSHSPSSPGGGGGGSPYNGSQAGCSSGGISPIPPQMGVSPKYRRSISFPI KGNSPTAIYGNMHMDGMGSGHMNIPTLSIGNGGGGGSTGMVSAGATGGGDAPYLGNSY GNMMTSNGQMHHGGGLDNSLCDYMRNMSLGGNGGGDGSNSMSLMQDRMRVMGGPKHLS EADAMAIAASGNDPSVYLNALKMGSPSRLSPHSPHSPIQGGNGGNVGDGTARFSRKVF VGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQQLID SCITDEDKLYLCVSSPTIKDKAVQIRPWRLADADYVLDATMSLDPRKTVFVGGVPRPL KAFELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG DIDKRVEVKPYVLDDQMCDECEGQRCGGKFAPFFCANVTCLQYYCEHCWAVIHSRPGR EYHKPLVKEGADRPRAVPFRWC" ORIGIN 1 attagctttc gttctctcga tagaaaaatt tgtagaaaat atcacacacg ggaaaaaaca 61 aaaacatgaa catatttttg taaaatattt aattagcgag aaggacacag cgtacacgta 121 tattttgtgg tttcgcatgt tgttcgtcag tgtttttgtg caattatttg aaagatttgg 181 ccaaacgcga aacgcaacag aaagaggaga acacaataag acaataacaa attcgcagcg 241 cgtgtgtcgt tgaatgtgcg tggttgtgtg cgtttgtgct gctgccaaaa gaacgcggat 301 ataaacaaat atccatttgg atcgttggag ctgttttgtt attggcatct agggcagcag 361 cggaactgag gcgcagcgga gccgcccaag tgcagctgta gaaagtgttg gtgcgggcgc 421 catggactcg ctcaagttac caaaggccaa cagtgccacc agcagtgcca gcggcagcaa 481 cagcaacctg tccggttcga cttccgcgtc cgcatccgca gccacatcgc ctacatcgtc 541 aggaactgca gtgggtggca ttctatccgg tgccccaaaa tcgccacctg gcctgggcag 601 cagcaccccg atctcggtgc gattcaatgc caacgaggag tccctggacg acatcctaca 661 gtccttccat cacagcaagc atagtcccag tggaggagcg agtggcggcg gagatgcctc 721 gcccacatcg aatctgctcg ggatgaagaa caacgggctg ggattggtcg tgggcaactg 781 tgactccctc tccagcagtc catcgcagcc ccagatgcat gccggatccg catccctctt 841 cggcaacgac gaagttagtc tgcgcaataa tttcatgcaa gccggtggtt tcttcaatcg 901 aaaaagttgc ggtggcctgc cgaatctcaa tctcaacaag ccgccccagc tccaccagca 961 acagcatcaa caacagcatc agcagcacca gcaacatcaa cagcagcaac agctccatca 1021 gcaccaacag caactgtcgc cgaatctgag tgccctgcac catcatcacc agcagcagca 1081 gcagcttcgg gaaagcggag gatcacatag cccctcgtcg ccgggtggag gaggcggagg 1141 atcgccgtac aacggctctc aggcgggctg cagcagcggc ggcatctcgc ccattcctcc 1201 ccagatgggc gtgtcgccca aataccgtcg cagcatatcc tttcccatca agggcaactc 1261 gcccacagct atctatggca atatgcacat ggacggcatg ggtagtgggc acatgaatat 1321 accgacactt tcgattggaa acggtggtgg tggcggatct actggcatgg tctcagccgg 1381 agcaactggt ggcggagatg cgccctattt gggcaacagc tatggcaaca tgatgacgtc 1441 caatggacaa atgcaccacg gtggcggctt ggataactca ctgtgcgatt atatgcgcaa 1501 catgtcgctg ggtggaaatg gtggtggcga tggcagcaac agcatgtctt taatgcagga 1561 caggatgcgt gtgatgggcg gtccgaagca tctgagcgag gccgatgcta tggccatagc 1621 agccagtgga aatgatccat ccgtctactt aaatgccctc aaaatgggtt cgccatcgag 1681 gctctctcca cactcgccgc actcacccat ccagggcgga aatggaggaa acgtcggcga 1741 tggcacggct cgcttctccc ggaaggtatt cgttggcggt ctgccaccgg acatcgatga 1801 ggatgagatt accacttcgt ttcggcgctt cgggccattg gtcgtcgatt ggccacacaa 1861 ggcggaatcc aagtcgtatt ttccgcccaa gggatatgcc ttcctgctgt tccaggacga 1921 gagcagtgtg cagcagctaa ttgactcgtg catcacggat gaggacaagc tgtatctatg 1981 cgtttcttcg ccgacgatca aggataaggc agtgcagatt cgtccttggc gcctggccga 2041 tgcggactat gtgcttgatg ctaccatgtc actggaccca cgcaaaacgg tgtttgtggg 2101 cggcgtgcca cgtcctctga aggccttcga actggcaatg atcatggata gattgtacgg 2161 tggagtatgc tatgctggaa ttgacaccga tccggaatta aagtatccaa agggcgctgg 2221 acgtgtggcc ttctcgaatc agcagagcta catagcggcc atctcagcca gatttgtgca 2281 gctgcagcat ggcgatatag acaagcgggt ggaggtcaag ccctatgtcc tggacgatca 2341 gatgtgcgac gagtgcgagg gtcagcgttg tggtggcaag tttgcgccct tcttttgcgc 2401 caatgtcacc tgtctgcagt actattgcga acactgttgg gccgtcatcc attcgcgacc 2461 tggacgcgaa tatcacaagc cgctggtcaa ggagggagcc gaccggccgc gtgcggtccc 2521 ctttcgctgg tgttaacggc ggcgctggta ggccgcgctg cacgacgaga gacgccaaca 2581 gagggagcaa cgacaccggt tgttaaacgc agcgctggca gtgcccagaa tcataacaga 2641 atcatcagga tcgggaggag tcgcagaagg agcgggagtg gcagcactag atgccgctgg 2701 cggagatgcg gatcgaaggc gaagaatcta gtagataacc attagagaca acacacgcac 2761 caccaacacc cactcacaca caacagtcgg atactattct cataagcaaa agacaattgc 2821 ccgggggaat cacccattcc gaagggcaag gtgcaaatac aacgggagct ggacaaaggt 2881 gtccctttga atagccacca gagtctacag ttttagaggc gagaaacgaa agcaacatag 2941 tttttagttc ttatttattc ggcaatcagt tttttttttt tgtttcgcgc ttgctagttt 3001 tacatttgct taaccgaaat tttagttttg attttgcgtt cgatgcctgc acagtatttt 3061 ttgtacttta tatttttagc aacatttatg tttgctaata tgttatttaa tctcac //