Dbfetch
LOCUS NM_167963 3245 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant A (CG42304), mRNA. ACCESSION NM_167963 VERSION NM_167963.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3245) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3245) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3245) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3245) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3245) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3245) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3245) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3245) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3245) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3245) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3245) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3245) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3245) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3245) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3245) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3245) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3245) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3245) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_167963.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3245 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3245 /gene="CG42304" /locus_tag="Dmel_CG42304" /old_locus_tag="Dmel_CG32297" /gene_synonym="CG1248; CG32297; Dmel\CG42304" /exception="dicistronic gene" /map="62E8-62E8" /db_xref="FLYBASE:FBgn0259200" /db_xref="GeneID:38332" CDS 1271..2968 /gene="CG42304" /locus_tag="Dmel_CG42304" /old_locus_tag="Dmel_CG32297" /gene_synonym="CG1248; CG32297; Dmel\CG42304" /note="CG42304 gene product from transcript CG42304-RA; CG42304-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_728769.2" /db_xref="FLYBASE:FBpp0288962" /db_xref="GeneID:38332" /db_xref="FLYBASE:FBgn0259200" /translation="MVIQRSWKIPTDVGGSINSSTTSANEVQQRSSPGMQLQAANSSS DDSDCSNQTTHSMDTRVASPVEGVRKQTEKDVVPETNTITLSLLGESTSSDAESSQKY VTTPDMAENMLQRIRQRLGGSHNMESGGSAESAMRALELLRISVQQAFDAEVNELIKK YMQNYFKPAFGNIKENLGQHSVNEETLQKMSSCALLENAKAQYTNFVRQHRLVANATD QQRLALKRSAKQDLNPISKVFAGNAGFMPNKPMPCTATTANQLPTQNQNPAALLLSQP DLQPVQPLQQQQQQEQTQTQNQQQPQHRSTVTPLVGGTLPTPVRRQIFWNTAQISTTT KFVLDVQANLSFGFGTDGKERLASKHPELIRYLPDGEDREWLATRGIIPAENRSSRFL FLIYDEVCRLQQTHELYRHKTNIDLSMMLTFSVTDAMIHKMRLFFVDLNIKSRGLITN SYILPSQQQSGNTNNSHLRNALLQGASAQQHQQQVATPPSDETALKELPAASPTPCLQ GQVVGSTTTPLKTKLAASSTLSSSHATLTALLNNGGAVVGATPTGNSTSSNIAKFRN" ORIGIN 1 tcacactgat ttctagccgg cacattgatt tgattaactc ttcaatatgg agtcgagttt 61 tcaggagctg tataaaaaag gcctggatat aggtgagcag cagaagcagc gccagaagga 121 gctgctaaag cagcagaaac tccgccgaca gcaggaacag gatgactacc gtccgctgca 181 aaatcaagag aaaccggtgc caagaaagaa aagcgggaaa cgttctggtc accaaaaagg 241 catcccgtac agaccacaac tctcggagtg gctgcgccat aagcccgacg atctcaacga 301 gtggctgctg gtaccttgtc cagtgggcaa aaggtgcctc gtggtggcaa gcaaggggat 361 caccaaggcg tactccaaag ggggctggat gttcgtgaat ttccgatcct cgctgcccgg 421 cgactggcag ctccaaaagg gtgaaacaat actagactgc gtgtatgttg aggatgcgga 481 caccttctat gtgctggatg ccatatcatt tgggctacag gaagtgcagg agtgcgaggc 541 gtcctttcgt ttctattggt tgcgcgcccg attcgaggag cacgattatg acaagattag 601 cgagaacaac gaaaagaaat ttaagctcct ggatcacttc gacttcgagg acccctccgc 661 agtagaacag gctctgcata agtatccttt tttcccggag aacaagccag acctagatgg 721 cttcctattt tatcataaag aggctagtta tgtgtgtcgg gaaactccct tagtatgctg 781 gctgtttcca tttatgatgg aggatgtcct tggcttgccc gttaataagt gctataaggc 841 cccggaggat taccaaccca gccatgtttt gcaatatatg gatgcatttg aacaaaagct 901 ggcagagcac agaaggactc ttaaagagca gaaaaagaaa gtgaacgagc agaaggagga 961 tccacacacc atggaggcgg aagaggatgt cgaaagcgat gagtacgata gcttaaagcg 1021 agtactggat caacagcgac gtctggagct aggtgaattc gacatggact gtgcggagcc 1081 gccatcagct gatggctgct aggcgaaatg ggcagcggtg tgggggtggc ttttctgcgc 1141 agacgctttg aaaacacggc cctggacaaa tagcctcagc tcgcgcccag gaaaatcaga 1201 aaacccagat tgcggccagc ccaccagcaa acagaactta ttgaaattgt taaaaaattt 1261 ctaaccaaac atggtcattc agcgaagttg gaagatcccc actgacgtgg ggggttccat 1321 aaacagcagc accacatcag ctaacgaggt gcagcagcgt tcatctccgg gcatgcaact 1381 gcaggcagcc aattcctcct cagacgactc cgactgctct aatcaaacca cacattcgat 1441 ggacacacgg gtggccagtc cggtggaggg tgtccgaaag cagacggaaa aggatgtggt 1501 acccgaaacc aacacaatca ccttgtccct gctgggcgaa tccacatcct ctgatgcaga 1561 gtcctcgcag aaatatgtaa ccacaccaga catggccgag aacatgttgc aacgcattcg 1621 ccagcgactt ggtggctctc acaatatgga aagtggcggt agtgcggagt ccgcgatgag 1681 agctctagaa cttttgagga tcagtgtaca gcaagccttt gatgctgagg tgaatgagct 1741 cattaagaaa tatatgcaaa actactttaa acccgctttt ggcaacatca aggagaacct 1801 gggccagcat tctgttaatg aggaaacact tcagaagatg tcctcgtgtg cattgttgga 1861 gaatgccaag gctcagtaca cgaactttgt gcgccagcat cgtttggttg ctaacgccac 1921 ggatcagcag cgcttggcgc tcaaacgctc agctaaacag gatctcaacc caattagtaa 1981 agtgtttgct ggtaacgcgg gttttatgcc aaacaaaccc atgccctgca cggcaactac 2041 ggccaaccaa ttgccaaccc agaaccaaaa ccctgcggct ctcctgcttt ctcaaccgga 2101 cttgcaacca gttcaacctc ttcagcagca gcagcaacag gaacaaacac aaacgcaaaa 2161 ccaacaacaa ccgcagcatc gctccacggt tactccattg gtgggcggca ctctgcccac 2221 tcctgtgcgc cggcagatat tctggaacac cgcgcagatt tcgactacca ccaagttcgt 2281 gctggatgtg caggctaacc tatcgtttgg ctttggcacc gacggcaagg aacgattagc 2341 cagcaagcat ccagaattga tacgctacct gccggatggc gaggacaggg agtggttggc 2401 cacccgtggg attattcctg ccgagaatcg aagctcacgg tttttgtttc tcatctacga 2461 tgaagtgtgc cggctgcagc aaacacacga gttgtatagg cacaaaacca atatagatct 2521 tagcatgatg ctcaccttca gcgtcaccga tgccatgata cacaagatgc ggctgttctt 2581 cgtggacctg aacatcaaga gccgcggact tataacgaat tcatatattt tgcccagcca 2641 gcagcagtca gggaatacca acaacagtca tttaagaaat gcccttctcc agggcgcctc 2701 agcgcagcag caccaacaac aggtagccac accaccgtct gatgaaactg cgctcaagga 2761 gctcccggct gcatcaccca ctccttgctt gcagggtcag gtggtgggta gcacaacaac 2821 gccgttgaag accaagctgg ctgcaagttc tacgctcagc tcctcgcatg ccacacttac 2881 ggccttgctg aacaacgggg gagctgttgt gggagcaact cctacaggca actccacttc 2941 cagcaacatc gcaaaattta gaaattaatt aatgtagatt aatgtataat tcttatgctt 3001 gtttgttacc aataatgaac ggtgatttta ggttgctgat taaatgaaat tccatgttta 3061 tgagtttgaa aacagcagca attttacttt aaaccataaa aggcggccca taaccttcat 3121 gtctatttct gcgcgtaaca tttaatcatg tccaacgtag aattgtattg aaagaaactg 3181 caatagtaat agacaacttc aaataaatat ttgatgttta ttgaaactca atttgatata 3241 catat //