Dbfetch
LOCUS NM_167663 3253 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Gamma-tubulin ring protein 84 (Grip84), transcript variant B, mRNA. ACCESSION NM_167663 VERSION NM_167663.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3253) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3253) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3253) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3253) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3253) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3253) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3253) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3253) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3253) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3253) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3253) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3253) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3253) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3253) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3253) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3253) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3253) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3253) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3253) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3253) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3253) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3253) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3253) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167663.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3253 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3253 /gene="Grip84" /locus_tag="Dmel_CG3917" /gene_synonym="CG3917; Dgrip84; DGrip84; Dgrips84; Dmel\CG3917; GCP2; grip84; l(1)[[t]]PG36; l(1)[[t]]PG66" /note="Gamma-tubulin ring protein 84" /map="18D1-18D1" /db_xref="FLYBASE:FBgn0026430" /db_xref="GeneID:32946" CDS 458..3016 /gene="Grip84" /locus_tag="Dmel_CG3917" /gene_synonym="CG3917; Dgrip84; DGrip84; Dgrips84; Dmel\CG3917; GCP2; grip84; l(1)[[t]]PG36; l(1)[[t]]PG66" /note="CG3917 gene product from transcript CG3917-RB; CG3917-PB; Grip84-PB; DGrip84; gamma-tubulin ring protein 84" /codon_start=1 /product="Gamma-tubulin ring protein 84, isoform B" /protein_id="NP_728265.1" /db_xref="FLYBASE:FBpp0074545" /db_xref="GeneID:32946" /db_xref="FLYBASE:FBgn0026430" /translation="MYALLVFVERYSECKPVSESSSSTSLSAMGLPHGNKTSDVNSAA GSVPTTLAIASTSTILTTSQNVSGSTRLSLTQSQDFPTSTPVNCKKATESDTTPVVFV RRGPMDRNRGAGKDERNDLSVIKERVLNAVSDQSLSGYRSVTNKTGNSPKSMPNDLVT LTDVPDEYRTHLLWEYYKVDGDKVPRAEIAAMPLLSQESMLLDELLHCLTGIRESLLV PQKPIISAVGLAKYDTDFDIHTHLDRSLTHQVREILPLASYFMGVQKIIAATDGLGQV MNSLNEALQELTHDFYLIIVQAEQELRHNRLTLQKLLYYLQPTMWVMHEVWSSLVIIQ LSDSRDAEVLTYLHERIKRLEGNKDAQQLIIGLVRKAAKPYMRMLQMWIQKGVIVDRH REFLVVDNEVIHRDELPEHYSDDYWERRYTLRDEQIPSFLAKYSDKILRTGKYLNVIR QCGKRVMPTQEMNLEFDPTSERHVSVINDAYYFAARMLLDVLLTENDLMGHLQSVKRY LLLNQGDFTMQFMDACEDELTKNVDHVLPMTLENLLGLTLRISSARNDPYKDDLHCEL LPYDLVTQMSKIMKKEENWQAQPRLDLSGLECFAFTYEVKWPCSLVLNHISISKYQML FRQLFYCKHVERQLCKIWKENSIARQFEPQAASLYRAAFTLRQRMMNAIQNLEYYMMI EIIEPNWHIFIEKMKTVENVDNVLRLHQDFLDSCLKNCMLTESSHLNRSIFKLCKICL KYCEFIQITQRYFQDAELRSMVRDSADSSESEQESLHCPQIETPLDPTDTFSERVRRF DLEFTQLLISFLKQINSMAKKNTADCFMNLVHRINFNAFYTDQMDKMCVEDAIG" ORIGIN 1 cagtcggcac tcaagcaacc cggaaaagaa caacaaaata ttgagaagag cggcgcactc 61 aaaaagagct caattgccgg ttataactgt aaattgagaa gcgcggaact ataaattgcc 121 atctccgtga tgagtaaacc ccatgcgctg cgcggtgtgc tcgccaattt gatcagcgag 181 tcgcagtaag tggattgagt gcacaggtgg ccagtcgatc tagccgttgc tcctgcaccg 241 cctctttccc gccattggca ccatagttta ctgtcatttt ttatcccaca gatcgcccct 301 aactccggag agcatcattc gggagtttcg ggccactagt gatcggcggc tgccagcctg 361 cgatctgatc aaagtcctgg tgtccatcag cgagaagcgt cccaacttcg cagaggtgac 421 caaggagatc tcgcacattc tgcagaataa ggatcccatg tacgcactgc tggtgttcgt 481 cgagcgatac agcgaatgca aaccagtctc cgagagcagc agttccacta gcctttcagc 541 gatgggcttg ccgcacggaa acaagacttc ggatgttaat tccgcagccg gttcagtccc 601 caccacattg gcaatcgcaa gcacctcgac aatcttaacc acatcgcaaa acgtatctgg 661 ttccaccagg cttagcttga cccagtccca ggactttccc acctcgacgc cggtgaattg 721 caaaaaggcc actgaatccg acactacacc cgtagtcttt gtcaggcgcg gcccaatgga 781 ccgtaaccgt ggagcgggca aggatgagcg caacgactta agtgtgatca aggaacgtgt 841 gcttaatgcc gtttccgatc aatccttgag cggctaccgc tcggtgacca acaaaacggg 901 caacagccca aagtcaatgc cgaatgacct ggtgacgcta actgatgtgc ccgatgagta 961 ccgcacccat ttactgtggg aatactacaa ggtggacggg gacaaggtgc cgagggcaga 1021 gatcgcggca atgccgcttc tcagccagga gagtatgctg ctcgacgagc tgctgcactg 1081 cctcacgggc ataagagaaa gcctcctggt gcctcagaag ccaattattt ctgccgttgg 1141 cctggccaaa tacgacacgg actttgacat acacacgcac ctcgatcgct cgctgacaca 1201 ccaggtgcgg gaaatcttgc cattggcctc ctacttcatg ggcgtgcaga agataatcgc 1261 ggctaccgac ggcctgggtc aggtgatgaa ctcattgaat gaggcactgc aggaacttac 1321 acacgacttc tatctgataa tcgtacaagc cgaacaggag ctgcgccaca atagattaac 1381 attgcagaaa ctactgtact acctgcagcc gacgatgtgg gtgatgcatg aggtctggtc 1441 ctcgttggtg atcattcagc taagcgattc acgggatgcc gaagtgttga cgtatttaca 1501 cgagcggatc aagcggctgg aaggcaacaa agatgcacaa cagctgatta tcggactggt 1561 gcgcaaggcg gccaagccgt acatgcgaat gctgcagatg tggatccaga agggcgtgat 1621 cgtggaccgc caccgggaat ttctcgtagt ggacaacgaa gtgatccatc gcgacgagct 1681 gcccgagcac tattccgacg attattggga gagacggtat accttgcgcg acgaacaaat 1741 accatcgttt ctggcaaagt attcggataa gatcctgcgc accggcaagt atctcaatgt 1801 gatcagacag tgtggcaagc gcgtaatgcc cacgcaagag atgaacctag agttcgaccc 1861 gaccagcgag cggcacgtgt ccgtcatcaa cgacgcttac tactttgccg cccgcatgct 1921 gctggatgtg ctgctaacgg agaacgacct gatgggtcac ctacagtcgg tgaagcgtta 1981 cttgctgctc aaccaaggcg acttcaccat gcagttcatg gacgcctgcg aggacgagct 2041 gacgaagaac gtggaccacg tgttgcccat gacgctagag aacctgctgg gactaacgct 2101 tcgcatttcc tcggcgcgta atgatcccta caaagacgat ctgcactgcg agctgctgcc 2161 ctacgacctg gtcacgcaaa tgtccaagat catgaagaag gaggagaact ggcaggcaca 2221 gcctcgcctc gatcttagcg gcctcgagtg cttcgctttc acctacgagg tgaagtggcc 2281 ctgctctttg gtgctgaatc acatttccat ctccaagtac caaatgctct ttcgacagct 2341 cttctactgc aagcacgtgg agcgccaact gtgcaagatt tggaaggaaa actcgattgc 2401 caggcagttc gagccgcagg cggctagtct ctatcgagcg gcgttcactc tgcgccagcg 2461 tatgatgaat gccatccaga acctggagta ctacatgatg atcgagatca tcgagcccaa 2521 ctggcacatt ttcattgaaa agatgaagac ggtggagaac gtggataacg ttctgcgtct 2581 ccaccaggac ttcctcgact cgtgccttaa gaactgcatg ctgaccgagt cgtcgcatct 2641 gaatcgttcg atcttcaagc tctgcaagat ctgcctgaag tactgcgagt tcatccagat 2701 cacgcagcgt tactttcagg acgctgagct caggtcgatg gtacgtgata gcgcggacag 2761 ctccgaatcc gaacaggaga gcctgcactg cccacagatt gagaccccgt tggatccgac 2821 agatacgttt tcggagcggg ttaggcgctt tgatctggaa tttacccaac tgctgatatc 2881 gttcctcaag cagatcaaca gcatggcgaa gaagaacacc gccgattgct tcatgaatct 2941 ggtgcaccgc atcaacttca atgccttcta caccgatcaa atggacaaga tgtgtgtaga 3001 ggatgccatt ggctaagcca gcacgtctag aggaaaggat gtggatgtgg atgtggatgt 3061 ggacgtggaa acggaaacgg aaaagacaag aacaaagtat tagataaatg aatttcataa 3121 tcacaagcgc acatttacca tcattcccca cgcatgtctt ctcatttgcc atccaacaaa 3181 gcgcaccaat tgttacccgt ttagttatac aaattcgaat atgtatgaac caataaacca 3241 attaaaatgt cct //