Dbfetch
LOCUS NM_167086 3610 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant C (CG3168), mRNA. ACCESSION NM_167086 VERSION NM_167086.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3610) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3610) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3610) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3610) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3610) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3610) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3610) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3610) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3610) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3610) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3610) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3610) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3610) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3610) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3610) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3610) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3610) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3610) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3610) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3610) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3610) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3610) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3610) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Dec 17, 2009 this sequence version replaced NM_167086.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3610 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3610 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /map="6C9-6C10" /db_xref="FLYBASE:FBgn0029896" /db_xref="GeneID:31612" CDS 635..2533 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="CG3168 gene product from transcript CG3168-RC; CG3168-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_727117.1" /db_xref="FLYBASE:FBpp0070944" /db_xref="GeneID:31612" /db_xref="FLYBASE:FBgn0029896" /translation="MVEGDSAKGKSEFYNVEAGLQPNYNQSAASNQASNHPTGQANAP ATGNATSHIDNRAIIQPYSLGTGPKQPEYQFAADNRGYEPDSHANGKQQDVERDAPDG GHGGHGPPGKGGKGGKGRKKSVPLPEPTAPIVANFERAIELCGYGKFHYILLAICGLV STSEEMDVISMSFILPSAECDLDLNTETKGWLNSIIFIGMMVGAYFWGSIADSFGRKK VLIVISFMNAFCIVASSFSQTYSFFMLFRFLNGAALGGSGPVIWSYFAEFQPKAKRGS MLSFMAAFWTFGNLFVASLAWLIIPRTIGFTTPYFTYNSWRIFLLVCSLPSFLVGFLL FYLPESPKFLLTRGKKDRALAIFRGIFVTNTKRRPDEYMVYDLEVDEKLLESNGNVKN KYSRMISGMVDHSRALFKSPILRFTIVSITINFTFHIGYYGLLMWFPELFNRFEEYEK AFPDQSAGVCAVTDYVVNLAKEQSNNGTCSSDIPQSVFMESLISLASALPANLLAILG MDMLGRKFFLIAGTMTAGICSALMYFVRSSVQNLVVSAIFSGAISAANAALDCLITEV FPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPTFIVSGLLIGGGLMCLLLP NTTRKELN" ORIGIN 1 cgacattagc acacgaaatc tgctattatc cgatactgaa aaaatctata aaaaaaaaac 61 caaaataaat agaaataaaa atacgaataa tagttaaaag caatgcaaag cgcgtaataa 121 aaattacaca tcaaaataaa tcgtttagtg atacccattc gattcccatt gaaagcgatt 181 taaacgcaag cgtttctaga gcgtgaagaa atcaatataa atgaaataca aacagaggca 241 aacaaaacgc atatacaaca aaattaacaa gcattaacca agcaaatgaa aagaaaatcg 301 aaccactaaa gcacctgcca agactccaaa ttataaacac attcaagcgc gaaagcatca 361 acaaatcgta caagttggaa aaacagcgga aaactttgtt tcccataccg aatatcaatt 421 aaaacaaaga gaattaaaaa agaactagga tcgaacacga tagaaaagca ctagccaaag 481 cggaaaacag ccacaaaacc gctaagcgag gcagacacaa ctgtacccat ctaagcagag 541 cttagagcaa aaagccaaca aaaaaccccg acaagtaaac ccaatttcct ttttgctacg 601 cgcacaagaa gccaacaaaa ccctgaacta tagaatggta gaaggtgatt ccgcaaaggg 661 caaaagcgaa ttctataatg tagaagctgg actacaaccg aactacaacc agagcgcagc 721 aagcaaccaa gcaagcaacc atcccactgg ccaggccaac gcaccagcca ccggaaacgc 781 gacttcgcac atcgacaacc gagcgatcat ccagccgtac tccttgggca ccggacccaa 841 gcagccggag tatcaatttg cggcggacaa tcgcggctac gagccggaca gccatgccaa 901 tggcaagcag caggacgtag agcgggacgc ccccgatggg ggtcacgggg gtcacgggcc 961 gcccggcaag gggggcaagg gtggtaaggg acgcaagaag tccgtaccct tgccggaacc 1021 cactgcccca atagtcgcca atttcgagag ggccatcgaa ttgtgcggct atggcaagtt 1081 ccattatata ctgctggcca tctgcggatt ggtcagcacg tccgaggaaa tggatgtcat 1141 atccatgtcc ttcattctgc catcggcgga gtgtgacctg gatttgaata cggagaccaa 1201 gggctggctg aactcgatca tcttcatcgg catgatggtg ggcgcttact tctggggcag 1261 catcgccgat agctttggcc gcaagaaggt cctcatcgtc atctcgttca tgaacgcctt 1321 ctgcatcgtt gcgtcgtcct tctcgcagac atactcgttc ttcatgctgt tccgcttcct 1381 caatggtgca gctttgggcg gcagtggtcc tgtgatctgg tcgtacttcg ccgaattcca 1441 gcccaaggcg aagcgcggct ccatgctgag cttcatggcc gccttctgga cgtttggcaa 1501 tctgttcgtg gccagcttgg cctggctgat catcccgcga acgattggct tcaccacgcc 1561 gtacttcaca tacaactcgt ggcgtatctt tctgctggtc tgctcactgc cctcgttcct 1621 cgtgggattc cttctcttct atctgcccga atcgcccaag tttctgctga cgcgcggcaa 1681 gaaggatcgc gctctggcca ttttccgtgg cattttcgta acgaacacga aacgccgtcc 1741 ggacgagtac atggtctacg acctggaagt ggacgagaag ctgctggaga gcaatggcaa 1801 tgtgaagaac aaatatagcc gcatgatcag cggaatggtt gaccacagtc gcgccctgtt 1861 caagtcgccc atactgcgtt tcactatcgt ttcgattacg atcaacttta cattccacat 1921 tggctactat ggcctgttga tgtggttccc ggagctcttc aatcgcttcg aggagtacga 1981 gaaggcattc ccagatcagt cggccggcgt ttgtgctgtc acagactatg tggtcaacct 2041 ggccaaggag caaagcaaca atggtacctg ctcatcggat ataccgcaat cggtgttcat 2101 ggaatcgctg atatcactag cctcagcgct gccggccaat ctgctggcca ttctgggcat 2161 ggacatgctg ggcaggaagt tcttcctaat cgccggtacc atgaccgccg gcatctgctc 2221 ggcgttgatg tactttgtgc gcagctccgt tcagaacctg gtcgtatcgg ccattttcag 2281 tggtgccatt tcggcggcca atgcagcgct cgactgcctc atcaccgaag tattccccac 2341 caagctgaga gccaccggcg tggccatttc aatggtggcc gctcgcttgg gcggcatcat 2401 tggcaacatc gtgattgccc agctgctgga caactactgt ccatcgccca cgttcatcgt 2461 gtcgggtctg ctcatcggcg gcggtctcat gtgcctcctg ttgcccaata cgacgcgcaa 2521 ggaactcaat taagcagcta atcaattccc aacgatagcc aaccagccaa aaaaaaaaca 2581 ccccatagaa tcttctgctt taactgctag tctgcaaggt cttgtttcga gtcatgatac 2641 tatggtttat aatggatcat agatattaac ttcaggtcaa gacctttttg ggctagataa 2701 gttccccttt gaacaatcaa caatagttaa cacaccgccc aaaaaaccac ccgcgaccca 2761 caagtaattt ccatttgccc cattccgcca gaggatcggg cattatctgt gtatatatgg 2821 tatgtgtgtg ctacaataca cgattatttg tatcgtcagt aattatttaa cgatagcgat 2881 aacgattttc attgtgtgtc taattttaaa cgacccttta ccccctttac tccccctttc 2941 cctacccact acaaatatct atcaatctat tggaatttaa atgaaccaac aaaatgaaat 3001 cagaaatggg cgaaagaaaa gtcacaacga gaacaaacct tatcacaagg aaaataagaa 3061 aatttggaaa ctaatacata caaccatttt ggaatgcgga ttggcattct ttcgcccaat 3121 tatgataagc aaagaaaacc ccaagccagc gagaagatat agcaggtagg atcgatagca 3181 atcgatgtat atgtattgta ttgtacgata tgtagagaat aatatatata tatttggcaa 3241 gcgccggcgc cggctgaagc agcagcagag ggactgagta acggtaacgg taaagataag 3301 gggctaagcg ccggataatc aaatggaatc aaagatacta tcgcaccgtt ctcgttccgc 3361 tgctgtccgt tattgttgtt attattgcta ttattattaa tgcattcaat gtaaaacaca 3421 tacgtatata actttatcta tatattaaac atacatacta tatcaaaaag atattttttt 3481 tttgtttttt tttcgtcatg taggaccaaa gcacaggaag tgaaagaata tttttaaaat 3541 ttagttacgt tataacaagt tacgctacat atatacaaaa caaaaaccct aataaaaaag 3601 gacaaaccac //