Dbfetch
LOCUS NM_166970 2604 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster dunce (dnc), transcript variant G, mRNA. ACCESSION NM_166970 VERSION NM_166970.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2604) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2604) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2604) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2604) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2604) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2604) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2604) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2604) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2604) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2604) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2604) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2604) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2604) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2604) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2604) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2604) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2604) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Dec 17, 2009 this sequence version replaced NM_166970.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2604 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2604 /gene="dnc" /locus_tag="Dmel_CG32498" /gene_synonym="CG10791; CG10792; CG10797; CG14267; CG14268; CG32498; Dmel\CG32498; Dnc; DNC; Dunce; Dunce PDE; EG:140G11.4; EG:96G10.7; EG:BACN05I09.3; EG:BACN5I9.2; fs(1)M42; PDE; PDE4; PDEII" /note="dunce" /map="3C9-3D1" /db_xref="FLYBASE:FBgn0000479" /db_xref="GeneID:31309" CDS 6..2450 /gene="dnc" /locus_tag="Dmel_CG32498" /gene_synonym="CG10791; CG10792; CG10797; CG14267; CG14268; CG32498; Dmel\CG32498; Dnc; DNC; Dunce; Dunce PDE; EG:140G11.4; EG:96G10.7; EG:BACN05I09.3; EG:BACN5I9.2; fs(1)M42; PDE; PDE4; PDEII" /EC_number="3.1.4.-" /EC_number="3.1.4.17" /EC_number="3.1.4.53" /note="CG32498 gene product from transcript CG32498-RG; CG32498-PG; dnc-PG; dunce phosphodiesterase" /codon_start=1 /product="dunce, isoform G" /protein_id="NP_726858.2" /db_xref="FLYBASE:FBpp0070496" /db_xref="GeneID:31309" /db_xref="FLYBASE:FBgn0000479" /translation="MATEAEGEEFDVDPMDEDDEDQTYDRETEEFYSNIQDAAGTGSS SRSKRSSLFSRSDSSATTTSSSGGGTFTGGKRRSAASILSSSMCSDLMTSDRRSSTAT EYSVKSVTTGNTSQRRSSGRIRRYVSRMTIAGARRRTTGSFDVENGQGARSPLEGGSP SAGLVLQNLPQRRESFLYRSDSDFEMSPKSMSRNSSIASESHGEDLIVTPFAQILASL RSVRNNLLSLTNVPASNKSRRPNQSSSASRSGNPPGAPLSQGEEAYTRLATDTIEELD WCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSGNQISEYICSTFLDKQQE FDLPSLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTG ERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTS LMIPPKTFLNFMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEVGG ALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVAFKLLQNQGCDIFC NMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQ VLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIE KSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSMIPPSPPPSGVDENPQ EDRIRFQVTLEESDQENLAELEEGDESGGESTTTGTTGTTAASALSGAGGGGGGGGGM APRTGGCQNQPQHGGM" ORIGIN 1 atacaatggc cactgaggcg gagggcgagg aattcgatgt ggatcccatg gacgaggacg 61 atgaggatca gacctacgac cgagagaccg aggagttcta tagcaatata caggatgccg 121 caggcaccgg atcatcgagt cgcagcaaga gatcgtcgct cttctccaga tcggatagtt 181 ccgccaccac cacctcgtcg agcggcggtg gaacctttac tggcggcaag cgcagatcgg 241 ctgcctctat tctgtcctca tctatgtgct ccgatctaat gaccagcgat cgccgaagct 301 ccacggccac ggaatacagc gtcaagtcgg tgaccaccgg gaatacctcg caacgcaggt 361 cgagcggacg gattcgtaga tatgtctcac ggatgacaat cgccggagcc aggagacgca 421 ccacgggcag tttcgatgta gaaaatggcc agggcgctag atcaccgctc gagggcggct 481 cacccagcgc cggtttggta ctacagaatt tgccgcagcg tcgcgaatcg tttctatatc 541 gctccgattc ggactttgag atgtcaccca agtccatgtc ccgaaactca agcatcgcta 601 gcgaaagcca tggcgaggat ctcattgtga cgcctttcgc ccaaatttta gccagcttac 661 gttcagtgcg caacaattta ttaagtctga caaatgttcc agcatcaaac aaatccaggc 721 ggcccaacca atcgtcgtcg gcctcgcgat caggaaatcc accaggagcc ccgctatccc 781 aaggcgagga ggcatacacc cgcctggcca ccgacacaat cgaggagctg gactggtgcc 841 tcgaccagct ggagaccatc cagacccatc gcagcgtctc cgacatggcg tcgcttaagt 901 tcaaacgcat gctcaacaag gagctgtcgc actttagcga gtccagcaga tcgggaaatc 961 agatttccga atatatatgt tccacatttt tggacaagca acaggagttc gacttgccat 1021 cgctgcgcgt ggaggataat cccgagctgg tcgccgccaa tgcagccgct ggtcaacagt 1081 ccgctggaca gtatgcacgc tcccgatcgc cgcgcggtcc gcccatgtcg cagatcagcg 1141 gcgtgaagag accgctgtcg catacgaata gctttaccgg cgaacgtttg cccaccttcg 1201 gtgtggagac acccagggag aatgagctgg gcacgctgct cggcgaactg gacacctggg 1261 gtattcagat attcagcatc ggcgagttca gtgtcaatcg accgctcacc tgtgtggcat 1321 acaccatatt tcagagtaga gaattactga ccagtcttat gataccaccg aaaacttttc 1381 ttaactttat gtctactctg gaggaccact acgtcaaaga caatccgttt cacaattcgc 1441 tgcatgccgc cgatgtgaca caaagcacta atgtgctact caatacaccg gcgctggagg 1501 gcgtattcac gccgctcgaa gtgggcgggg cgctgttcgc cgcttgcata cacgatgttg 1561 atcatcccgg cttaaccaat cagttcttgg ttaactcaag ttccgaacta gcattaatgt 1621 acaatgacga atctgttttg gaaaatcatc atttagctgt tgcctttaaa ttattacaaa 1681 atcaaggatg tgatatattc tgtaatatgc aaaagaaaca acgccaaaca ttgaggaaaa 1741 tggttattga tattgtgctg tccacggaca tgtccaagca catgagtctg ctggccgacc 1801 taaagacaat ggtggaaacc aaaaaggtgg ccggctccgg agtactgctg ctggacaact 1861 acaccgatcg catacaggtg cttgagaatc tggtgcactg cgccgatctg agcaatccca 1921 ccaagccgct gccgctttac aagcgctggg tagccctgct catggaggag ttcttcctgc 1981 agggcgataa ggaacgcgaa tcgggcatgg acattagtcc catgtgcgat cgccataatg 2041 ccaccattga gaagtcgcag gtgggcttca tcgactacat cgtccacccg ctatgggaga 2101 cctgggcgga cctggtgcat ccggatgccc aggatatact cgacacgctt gaagagaaca 2161 gagactacta ccagagcatg ataccgcctt cgccgccgcc atcgggcgtc gatgagaatc 2221 cgcaggagga caggatacgc tttcaagtaa cccttgagga atccgatcag gagaacctcg 2281 ccgaactgga ggagggcgac gagagtggtg gcgagagcac caccacaggc acaaccggaa 2341 ccaccgctgc atccgcgcta agcggagctg gtggcggtgg cggtggaggc gggggaatgg 2401 cacccagaac gggtggctgc caaaaccaac cgcaacacgg tggaatgtga cggagagtcg 2461 tgggaattta tcgcaaatta caggaaaagg ctcacaactt tttcctatta cgttagtgac 2521 tactattaac acagaaaaaa ccaaaacaaa aacctaaaac gaaaagcaaa aaaaaaaaca 2581 aagaaaaact cttggaaaaa atgc //