Dbfetch
LOCUS NM_166042 3175 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster SNF related kinase (Snrk), transcript variant C, mRNA. ACCESSION NM_166042 VERSION NM_166042.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3175) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3175) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3175) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3175) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3175) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3175) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3175) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3175) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3175) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3175) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3175) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3175) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3175) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3175) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3175) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3175) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3175) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3175) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3175) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3175) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3175) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3175) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3175) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3175) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_166042.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3175 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3175 /gene="Snrk" /locus_tag="Dmel_CG8485" /gene_synonym="152964_at; CG8485; Dmel\CG8485; SNRK" /note="SNF related kinase" /map="50E4-50E4" /db_xref="FLYBASE:FBgn0033915" /db_xref="GeneID:36579" CDS 300..2882 /gene="Snrk" /locus_tag="Dmel_CG8485" /gene_synonym="152964_at; CG8485; Dmel\CG8485; SNRK" /EC_number="2.7.11.1" /note="CG8485 gene product from transcript CG8485-RC; CG8485-PC; Snrk-PC" /codon_start=1 /product="SNF related kinase, isoform C" /protein_id="NP_725371.1" /db_xref="FLYBASE:FBpp0086698" /db_xref="GeneID:36579" /db_xref="FLYBASE:FBgn0033915" /translation="MTLETQPVGGVSDGKIAGLYDLEETLGSGHFAVVKLARHVFTGA KVAVKVVDKTKLDDVSKAHLFQEVRCMKLVQHPNVVRLYEVIDTQTKLYLVLELGDGG DLYDYIMKHDSGLSEELARKYFRQILRAITYCHQLHVVHRDLKPENVVFFEKLGLVKL TDFGFSNKFLPGQKLETFCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQAP FEKANDSETLTMIMDCKYTVPSHVSTDCRDLIASMLVRDPKKRATVEEIASSAWLKPI DEPDSTTSTSEHFLPLVSREQLGEEDHAFIIQKMINGNIASKEEILQALDKNKYNHIT ATYFLLAELRLRRRREELAQKQRLLNDASMKVGDASRKLVPEKPSPTEAQKGGVPISI NVTPAAQFANDGGKPDKRSRKCSIVREEDEEESATECTAVGNELKVTSSSRREAFSDS PFSRSIHERSSSEPGNQTKGEQIANSGVPSHSRTKIVVSVDATLAHKLKQMEKSAKID EDTLSGLKELEIGKLKPLPSSSKNPVLTHRRTKLNKIRTPSCSSSEASDDDTKTRNKK KINKFVGDTPVRFRMHRRDSHDDSSDSQDQLYPPPGSASNAGNFISKSGSVSGKKEGQ SQYKEPNNKSDENRKSHSQKNRKQHNKDHVDKHSHAERQLADSSTATTGNSTNRRRRI RESQSLDRITEAQEYEMRHRCYAESEAASSSSSSTQHIDQRYSLLSLNTSTFSVAETK EEYDEEADATNATDQIMNTLNAAKATLQQEQYFNNNTNLSRNFNHNHNQSIIHISSQK ANGKKSNETPKDIYNLNSIEHIDLILEDKSLTKAIHVTGSKCFVTMKKIRRLGKYFPV MNFS" ORIGIN 1 tgtgtaacag ccctgctttt gcgatgctcc tgttgggaat cgaatgtaaa aaggactcat 61 tcaaatgaat cattaattgg gagcaggcga tgagtgtgca agtgcccctg tgggatgggc 121 tactgctcag cgtcattcag gccgctagct attacatcaa taagttcatg aagcagtatt 181 ttgccagcga aacatcccgt gtacgaaata atagaactct ataattatag ttttagctaa 241 tcgcggatag ttgtgcctgg ccaacacgca ggccgttgga agagtgccaa ggagccatca 301 tgacgctgga gacgcagccc gttggcgggg tgagcgacgg caagatcgct ggtctttatg 361 atctggagga gacactggga tccggacact ttgccgtcgt gaagttggcc cggcatgtgt 421 tcaccggtgc caaggtggcg gtcaaggtag tggacaaaac caagttggac gatgtgtcca 481 aggcgcatct gttccaggaa gtgcgatgca tgaaactggt gcagcaccca aatgttgtgc 541 gactgtacga ggttattgat acccagacca agctgtattt ggttttggag cttggcgatg 601 gtggcgatct atacgattac ataatgaagc acgactctgg gctcagcgag gaactggccc 661 gaaagtattt ccgccaaatc ctacgtgcta tcacgtactg tcatcagctt cacgtggttc 721 acagggatct aaagccggag aacgtggtgt ttttcgaaaa gctgggcctt gtcaagctca 781 ccgacttcgg gtttagcaac aagttcttgc cgggccaaaa gctagaaacc ttctgcggca 841 gcttggccta ctcggcccca gagatcctgc tgggcgactc ctatgatgcg cctgcagttg 901 acatttggtc cctgggagta attctgtata tgctggtctg cggtcaggcg cctttcgaga 961 aggccaacga ctcggaaact ctgaccatga tcatggattg taagtacacg gtaccctcgc 1021 acgtgtccac tgattgtcgg gacctgattg cctcaatgct ggtgcgggat ccaaagaaac 1081 gggccactgt ggaagagatt gcttcatcgg cttggctaaa gcccatcgat gagcccgatt 1141 cgacgacctc cacctcagag cactttctgc ctttggtcag tcgcgaacag ctgggcgaag 1201 aggatcacgc ctttatcata caaaaaatga taaacggaaa cattgcgtcc aaggaagaga 1261 tattgcaagc tcttgacaaa aataagtaca atcatataac agccacatat tttttgttgg 1321 cggaattacg tctgcgacgg cgacgagaag agctggctca aaaacagagg ctgctcaacg 1381 atgccagcat gaaagtggga gatgcgagtc gcaagctagt gcctgagaaa ccaagtccaa 1441 ccgaagccca aaaaggagga gtacccatca gcattaacgt gactccagca gctcagtttg 1501 ccaatgacgg tggcaagccg gacaagcgca gtcgcaagtg cagcattgtg cgtgaggagg 1561 acgaagagga gtctgccaca gaatgcacgg cggtaggcaa tgagttgaag gtaacgtcgt 1621 cgtcgcggcg cgaggccttc tcagattccc cctttagtag gtcaatacat gagcgttcca 1681 gctctgagcc cggaaatcaa acgaaaggcg aacagatagc taatagcgga gtgccaagcc 1741 attcacgtac aaagattgtc gtctcggtgg atgcaacgct ggcccataag ctcaagcaga 1801 tggagaagag tgccaagatc gatgaggaca cgctgagtgg tctgaaggag ctggagatcg 1861 gcaagctcaa gccgcttcct agcagcagca agaatccggt gcttacccac cgtcgcacaa 1921 agctgaacaa gattcggacg ccttcatgca gcagctcgga ggcctcagac gacgacacca 1981 agacacgcaa caagaaaaag attaacaaat ttgtcggtga cacgccagtg cggtttcgca 2041 tgcatcgtcg cgactcgcat gacgactcca gcgactcgca agatcagcta tatccgccgc 2101 ccggctcggc cagcaatgcg ggtaatttta tctccaaaag cggctcagta agcggcaaaa 2161 aagagggaca atcgcagtat aaagagccaa ataacaaatc cgatgaaaat cgcaaatctc 2221 acagccaaaa aaatcggaaa cagcacaaca aggatcatgt tgataagcat tcccacgctg 2281 agaggcagct ggcggatagc agcacagcta caacaggaaa ttccacgaat agaaggcggc 2341 gcattcgcga gagccagtcg ctggaccgca tcacagaggc tcaggaatac gagatgcggc 2401 atcgatgcta cgcggagagc gaggcagcat cctcgtcgtc ctcgtccacc caacatatcg 2461 atcagagata ttctttactc agcctaaaca ctagcacatt ctccgttgcc gaaaccaagg 2521 aggagtacga cgaggaggca gacgccacaa atgccacgga ccaaatcatg aatactttga 2581 atgcagccaa agcaacgctt caacaagagc aatattttaa taacaatacc aatcttagta 2641 ggaacttcaa tcacaatcac aaccagagca tcatccacat cagtagccag aaagccaacg 2701 gcaagaagtc caacgaaaca ccaaaagata tttataatct gaactcaatc gagcatatcg 2761 acttgatttt ggaggataaa agccttacca aagcaataca cgttaccggc tctaaatgct 2821 ttgtcaccat gaagaaaatc cgacggctgg gaaaatattt tcccgtgatg aacttctctt 2881 aatagacaca gttacttctt tgcaaagtgc attctaaata ttaaaaagaa actcggttaa 2941 gcgaactaca tagaaaatat gcatgtatta attaaaacgt ataaacgtca acgttatccc 3001 ccgtatatag gaaagagcgc gagaatattt aaatttagtg gtagcgtaat tgttttgtct 3061 gtcgtcgtca ttacgcttaa attattctaa atatattaat ttatgttaat tataagtcta 3121 atcactcaat gcaatattta gtgaaaatac attaatgccc atatgacaat tgact //