Dbfetch
LOCUS NM_165880 3530 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant C (CG8841), mRNA. ACCESSION NM_165880 VERSION NM_165880.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3530) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3530) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3530) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3530) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3530) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3530) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3530) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3530) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3530) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3530) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3530) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3530) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3530) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3530) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3530) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3530) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3530) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3530) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3530) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3530) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3530) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3530) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3530) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3530) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3530 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3530 /gene="CG8841" /locus_tag="Dmel_CG8841" /gene_synonym="Dmc1; Dmel\CG8841" /map="48F8-48F8" /db_xref="FLYBASE:FBgn0033713" /db_xref="GeneID:36336" CDS 207..2720 /gene="CG8841" /locus_tag="Dmel_CG8841" /gene_synonym="Dmc1; Dmel\CG8841" /note="CG8841 gene product from transcript CG8841-RC; CG8841-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_725132.1" /db_xref="FLYBASE:FBpp0087072" /db_xref="GeneID:36336" /db_xref="FLYBASE:FBgn0033713" /translation="MGNTDSKLNFRKAIVQLTQKNQKIDPSDEQFWEQFWQGHQTTLE DVFALVTSSEIRQIRNENPANLATLCYKAVEKLAQAVDSSCRTQAEQQCVLNCVRLLV RCLPYIFEDEKWRDFFWSSLPSQDKTMPLAQSLLNATCDLLFCPDFTVTATRRAGPEK AEELANIDSCEYIWEAGVGFAQSPPHNAHMERRRTELLKLLLTCFSEPMYRSPQQSEE PNKWIAYFTSADNRHALPLFTSFLNTVCSYDPVGFGVPYNHLLFADTTEPLVEACLQL LIVTLDHDMVVQQQLTQPGQASYDEGNCGDNLFINYLSRVHRDEDFHFVLKGITRLLN NPLVQNYLPNSTKRLHCHQELLILFWKICDYNKKFLYFVLKSSDVLDILIPILYHLNY SRADQSRVGLMHIGVFILLLLSGERNFGVRLNKAYSATVPMDIPVFTGTHADLLITVF HKIIATGHQRLQPLFDCLLTILVNVSPYLKTLSMVASVKMLHLLEAFSTPWFLLSAPS NHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRHVFHAMANLPTDMAGIAKCLSGRK TGGKFNLPRVPQRRTPAVSQELPSAHVPEEYNEEDEDEDEEEIINEEPKAEEDLESET ESHERSQAGELQSDVLTAQPAEPGTLKTSLLDTPGITQMTEREQAHPNDKPQVEDSTD IVPYDRSAASTPTDERKSTSPTELSRLSVAHRASIRMVPGESDRWTPTPEWIVSWRSK LPLQTIMRLLQVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILIRKYQA NAGTTAWFRTYIWGVIYLRNVEPAIWYDTEVKLFEIQRV" ORIGIN 1 ctgcaagcgt atataaaaaa aatataacct tgtttttaaa ataaaatatg ttgccaagct 61 gtcgatcaaa ttgatttaat caaattgata tttgaatatg agggccaaaa cagactactg 121 cgcacacttg cactgaggcg atcgagcacg gggcaggtgg atttacagga ctcagcgata 181 ccaaagcagc ccacaggccg aacaatatgg gaaacacgga ctccaagttg aactttcgca 241 aggcgattgt gcagctgacg cagaagaacc agaagatcga ccccagcgac gagcagttct 301 gggagcagtt ctggcagggc caccagacga cgctggagga tgtgttcgcg ctggtcacct 361 cgagcgagat tcgccagata cggaacgaga atccagccaa cctggccacc ttatgctaca 421 aggcggtgga aaagcttgcc caggcggtag acagcagttg tcgcacgcag gcggagcagc 481 agtgcgtttt gaactgcgtg cggctgctcg tccggtgtct gccgtacatt ttcgaggacg 541 aaaagtggcg cgacttcttc tggagcagcc tgccatcgca ggacaagacc atgccgttgg 601 ctcagtcact gctcaatgcc acctgcgacc ttcttttctg tcccgacttc acggttacgg 661 ccacgcggcg tgcgggcccc gagaaggccg aggagttggc gaacatcgat agctgcgagt 721 acatttggga agcgggcgtg ggtttcgccc agtcaccgcc ccacaacgcc cacatggagc 781 gcaggcgcac ggagttgctg aagctattac tcacctgctt ctcggagccc atgtaccgat 841 cgccgcagca gtccgaggag cccaacaagt ggatagcata tttcacctcg gccgacaatc 901 gccatgccct gccgctgttc acctcgtttc tgaacaccgt gtgctcctac gatccggtgg 961 gcttcggcgt gccctacaat cacctgctgt ttgcagacac cacagagccc ctggtggaag 1021 cgtgccttca actgctcatt gtcaccttgg atcacgatat ggtggtgcag cagcaactca 1081 cacaacccgg acaggcgtcc tacgacgagg gcaattgcgg cgacaacttg ttcattaact 1141 atctttcgag ggttcaccgc gacgaggact ttcactttgt gctcaagggc ataaccaggc 1201 tgctgaacaa cccactggtc cagaactatt tgcccaattc cacaaagcga cttcattgcc 1261 accaggagct gcttattttg ttttggaaaa tatgcgacta caacaaaaag tttctgtatt 1321 ttgtgctaaa gagctccgat gttctggaca tcctgattcc cattctgtat cacctaaact 1381 actcccgagc ggatcaatct cgagtgggct tgatgcatat tggagtattc atactgttgc 1441 tcctatcggg tgagcgaaac tttggggttc ggcttaacaa agcatactcc gccacggtgc 1501 ccatggatat acctgtgttt actggaaccc atgcggactt actcatcact gtgttccaca 1561 aaataatagc cactggccac cagaggctgc agccgctttt cgattgtctg ctgaccattc 1621 tggtaaatgt ctcaccatat ctgaaaaccc tctcgatggt ggctagtgta aagatgttgc 1681 atctcctgga ggcttttagc acaccctggt ttctgctatc ggcacccagc aatcatcatt 1741 tggtgttttt cctgctggag atcttcaata acattataca gtatcagttc gatggcaact 1801 cgaatctagt ctacaccata attcgaaagc gtcatgtgtt ccatgccatg gcaaatctcc 1861 cgaccgatat ggctggcata gccaagtgcc tgagtggccg taaaacaggt ggaaagttta 1921 acttgccgcg ggtaccacag cgaagaacgc cagctgtgtc ccaggaactg ccctcggccc 1981 acgtgccaga agagtacaac gaagaagacg aggatgagga cgaggaggag ataattaatg 2041 aagagcccaa ggcggaagag gatctcgaat cggagacaga gtctcatgag cgatctcagg 2101 cgggggagct gcagtcggac gttctcacgg cgcagccagc cgagccagga acactgaaaa 2161 cgtccttgtt ggacaccccg ggcattactc agatgacgga gcgggagcag gcgcatccaa 2221 atgacaagcc tcaggtggag gattctacag acattgtgcc ctacgacaga tcagccgctt 2281 cgacgccaac tgacgaacgc aagtccacct cacccacgga attgtcccgc ttgtcggtgg 2341 cccacagggc cagcattcgc atggtgcctg gcgagagcga tcgttggacg cccacgcccg 2401 agtggatcgt ctcctggcgc tccaagctgc cgctgcagac catcatgcga ctgcttcagg 2461 tcctagtgcc ccaggtggag aagatctgca ttgacaaagg actgaccgac gagtcggaga 2521 tcctcaagtt tctgcaacac ggaacgttag tgggactgct cccagtgccg catcccattc 2581 tcatccgaaa gtaccaggcc aatgcgggca caacggcatg gttccgcacc tacatctggg 2641 gtgtcatcta cctgcgcaac gtggagcctg ccatctggta cgatacggag gtcaagctct 2701 tcgagattca gcgcgtctag gtcagtaagt ggactcccag ctacaccagc agcgcaatcg 2761 tagcttacac gctttggcat ttactgtagt taatttattt agtacatatt tcattccaaa 2821 tgtttttgtg aagaatcagt gtgtaatgaa ctacctttcc cacaattttg cttattggca 2881 acaaaaaaaa tgaggcttat cagttacgat gtggcattga gatccattca acagatttgt 2941 tatcggcttt tagcattgat atttaattgc tttcctaatt tgttttgaag agtgttctaa 3001 aaaacagtat aagcacaaag tgtttttatt ttagttaatg actaaattat taaacaactc 3061 atgtttttgt aatctgtgac agaaaatgtt ccttgtgccg tatattttat tgcatggttt 3121 tatttatttt atattttaat aatttaaaaa tttcctgttt ttacttatgt atgtatttaa 3181 ggtgcaaata ccaagaataa attactttca ctcagccact ctacaaacga ttcgctttat 3241 ccaaacaaat ttgtaactgc acctattgac accataaaaa gctttacgtt ctcttgtaat 3301 gattaggaaa ctttagttga gtccaatgaa ctgctttgta aacttaatta aatatagaca 3361 ttaatgatag aattgagaaa gtgtattaat ttactgtcta cgtgtgctta taaactatat 3421 acacaaacta aacttatgac acctatacaa gtcagtttat ataaatcatt tacgaaatat 3481 agagcagaac ccaagataag taataaataa taaataaatt tcataaaacg //