Dbfetch
LOCUS NM_165759 3521 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster CAP, transcript variant G (CAP), mRNA. ACCESSION NM_165759 VERSION NM_165759.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3521) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3521) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3521) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3521) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3521) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3521) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3521) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3521) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3521) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3521) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3521) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3521) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3521) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3521) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3521) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3521) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3521) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_165759.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3521 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3521 /gene="CAP" /locus_tag="Dmel_CG18408" /gene_synonym="cap; Cap; CAP/Vinexin; CG18408; CG18409; CG3451; dCAP; DCAP; Dmel\CG18408; rexin; Rexin" /map="46F9-47A1" /db_xref="FLYBASE:FBgn0033504" /db_xref="GeneID:36084" CDS 1308..2810 /gene="CAP" /locus_tag="Dmel_CG18408" /gene_synonym="cap; Cap; CAP/Vinexin; CG18408; CG18409; CG3451; dCAP; DCAP; Dmel\CG18408; rexin; Rexin" /note="CG18408 gene product from transcript CG18408-RG; CG18408-PG; CAP-PG; cap; Rexin/CAP" /codon_start=1 /product="CAP, isoform G" /protein_id="NP_724912.1" /db_xref="FLYBASE:FBpp0087429" /db_xref="GeneID:36084" /db_xref="FLYBASE:FBgn0033504" /translation="MPNPIKSAQNSYKNQPGRIENYTTGHSSVSEKEKKEWWDEVMDI FNGNLEQSKLSPLYTEGNLSRALAKESGYTSDSNLVFRKKEVPVSSPLSPVEQKQAYK SLQAGGEPPLLGFRKPAPEKPRDLDPNAPPIPPQPPVKGLSSYDFPYSTDTVDGSDVN IHFKTPIRHEQRQNLSEEELAIRQAEHMQKLYHEERRRKYLQELQDMNSRRHTDNFTP SQKSPIALNRYDDFPTDVTLKSLVGPKTVARALFNFQGQTSKELSFRKGDTIYIRRQI DANWYEGEHNAMIGLLPASYVEIVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLN KGELVTLTRRVDGNWFEGKIANRKGIFPCSYVEVLTDIGAEDIAARTTTVITSQSTTN LRPNLDVLRTNINNEFNTLTQNGAQPPNGILKETRTLHKTDALHVDTSSEPLAYRALY KYRPQNSDELELLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPGNYVERA" ORIGIN 1 agttgggcac tagaacttcg actttgacgt tgtgtcgatc gagcgagaga gccatttaat 61 tgtagctatc ggaaattaca ctgcactaca aactcggttc cggaagtgta gtgattctta 121 cctcagttgt ggttttcgac tagcccattg acttcgccct ttgaaaatag actccctgtg 181 tttgtgtgtg ctttttgttt ggcttgccgt ctcaacttct cggcctctgt gtgtgtaact 241 tcggctaggg aaagtcggcg gggggaaatg tggccgggaa aacctgcgaa aactgacgca 301 ataggtcgaa gctgctggtg tagtagcagt gctaccagtg ttattggcgt aaacgttggc 361 aattacgcga caactttggc acttggatgc gacgcggcac tgagatcatt attcggtttt 421 agaatgtgcc ggcgagataa cagaatgggg cccactgtgc gccggagaca gtgggtcggc 481 ggacttctgg cggcggtctc tttttatgca cttgcagttt agttggctca cgtacgcggc 541 ctttgatgca acgccttttc gccgatgccg acgatttgca attaattggg aattaaattg 601 taaggacgtg acgtcagagc gggttcgatg ttcttgtggg gcgattcata aactcattta 661 ctaagcacat tgtttgtgtt aatacgctac gtgtgcgtgt gtgcgtgtgt atctgtgtgt 721 ttgttgtgta aaaggcaaac aaacaataag taggaggaga gcggaaaaca gacatgtgct 781 cagctcgtta tgggagaaca aaacgctcgg cgctgcccaa ataaataagc aaagcgtaaa 841 catgacagca ccgagactct caaaaatcta tgctaattag cagcaataac aacaaagaaa 901 gaagagtgta tctatgtagc cgagagaatg tatctcgaac ccatacccat acgcaaatac 961 ccccaacatc ataagtgcaa agccaacaaa tcggcaggca gccaaacact cggaatacaa 1021 ataatcacaa aatgtgaatg ttcagtgaat gggaagtgtg gctaaaagca aacattcgaa 1081 agatcacagt aaacggaaaa gttggagaga aaatctttga aagtcactcc aagtcataat 1141 cccgtccgtc gtacaagagc aacggatacg tctcagagcc cgagcccaac tacgattcgg 1201 attactcgac ggtgaggtac cgcacccaga atccgcaccg cgttcagtcc gtctcctcgg 1261 ctgtcaatgt gcgcaacctt aatcaggacg agaagttgta tggtactatg ccaaatccca 1321 taaaatcagc gcaaaactcg tataagaatc agccaggtcg catcgaaaac tatacgacag 1381 gtcattcgtc tgtttccgaa aaggaaaaga aggagtggtg ggacgaagtg atggacatct 1441 ttaacgggaa tctagaacaa tcgaaactat cgccattgta cactgaaggt aacttgtcca 1501 gagctttggc caaggaatcc ggctatacta gcgattccaa tctggtcttc cgtaagaagg 1561 aggtacccgt gagcagtccc cttagccccg ttgaacaaaa gcaggcttac aagagtctcc 1621 aggcaggggg agagccacct ctgctcggct tccgtaaacc agcgcccgag aaaccccgtg 1681 atctcgaccc gaacgcgccc cccattcccc cacagccacc agtcaagggt ctctcctcct 1741 acgatttccc gtacagcacc gacaccgtcg acggatcaga cgtgaacatc cacttcaaga 1801 cccccatcag gcatgagcag cgtcagaact tgtcggaaga ggaactagcc attcgccaag 1861 cggagcacat gcagaagctc taccacgagg agcgccgtcg caagtatcta caggagctgc 1921 aggacatgaa ttcgcgccgc cacacggaca acttcacccc gtcgcagaag tcgcccatcg 1981 ccctcaatcg ctacgatgac ttccccacgg acgtgaccct caagtcgctg gtgggcccca 2041 agacggtggc ccgggctctc tttaacttcc agggacagac ctcgaaggag ctatccttcc 2101 gcaagggcga cacaatctac atcaggcggc agattgatgc caactggtat gagggcgagc 2161 acaatgccat gattggactg cttccagcca gctatgttga gattgtcagt cgagatggag 2221 cccgtacccc atccaaacgg ccatcggagg gtcaggcccg tgccaaatac aacttccagg 2281 cccagtcggg cattgaactc tccttgaaca agggcgaatt ggtcactttg acacgccgag 2341 tggatggcaa ctggttcgag ggcaagattg ccaacaggaa gggcatcttc ccgtgctcct 2401 acgtggaggt acttactgat attggtgctg aggacattgc ggccaggaca accaccgtga 2461 tcaccagcca gagcaccacg aatctgcggc ccaatctcga cgtgctgcgc acaaacatca 2521 acaatgagtt caatacgctg acgcaaaatg gagcacagcc accgaacgga atcctcaagg 2581 aaacgcggac acttcacaag acggacgccc tccatgtgga caccagttcc gaaccattgg 2641 cgtaccgcgc actgtacaag taccggcccc agaactccga cgaactggaa ctgctcgagg 2701 gagatgtggt ccatgtgctg gagaagtgcg acgacggatg gttcgtgggc acctcgcaga 2761 ggaccggctg cttcggcaca ttccccggca actacgtgga acgggcctag aggagatcga 2821 tccaatgatc cagcccccgg agcggcgatc gtgcctaatc ttaatgaatt tgtagtctaa 2881 tacgaggagg aatcagcgtg gccggggcaa aggcagttct atgattaact ctgatttggt 2941 tttactggat tattttatgt tgttgttgaa taattcttat cccgctaatt ctgctgcttt 3001 cgttttgccg tattttaaag ctatttattt atttttaaac agagcattaa ttttatcaat 3061 gttggaatta cgtttattta tgacatccaa atattaacca aaagttgtcc cctccacctc 3121 ccccactcca acacacacac acaccaaata tcgaaggacc ttaattaaga tcatacatac 3181 atacatatgt actttgtcgt ttacctacta attttaacta gtcacagcta atttccaaaa 3241 agaatatcaa ttgcgaaaaa aagaagagac cgttgaacta aagtgcctta aagttgaaat 3301 ttaaatgact aaaacgatat aaaatgtttc aaagtgctaa gattcaagtg cccttgttga 3361 gtcggcagag tggataatta ctattgataa ttatgaatat tatttatgat attgtcgtgt 3421 ccgaaccaac agaaaccatt ttaaaaaatc tatacaaaaa tcgtttatta cacagacact 3481 gttgcaagcg taattagtaa ataaagaaga aactaaaaaa c //