Dbfetch
LOCUS NM_165551 2379 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein (CG30496), mRNA. ACCESSION NM_165551 VERSION NM_165551.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2379) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2379) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2379) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2379) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2379) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2379) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2379) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2379) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2379) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2379) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2379) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2379) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2379) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2379) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2379) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2379) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2379) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2379) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2379) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2379) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2379) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2379) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2379) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2379) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_165551.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2379 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2379 /gene="CG30496" /locus_tag="Dmel_CG30496" /gene_synonym="anon-WO0118547.218; BcDNA:RE73310; CG1952; Dmel\CG30496" /map="43E11-43E11" /db_xref="FLYBASE:FBgn0050496" /db_xref="GeneID:246652" CDS 143..2050 /gene="CG30496" /locus_tag="Dmel_CG30496" /gene_synonym="anon-WO0118547.218; BcDNA:RE73310; CG1952; Dmel\CG30496" /note="CG30496 gene product from transcript CG30496-RA; CG30496-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_724595.1" /db_xref="FLYBASE:FBpp0088000" /db_xref="GeneID:246652" /db_xref="FLYBASE:FBgn0050496" /translation="MQEQEMEVEVGDPAKASNLLRLIKQLLLEKAYDGVRMLFQSAQE SEKNTRLLPHIAMDLYHDVCLENISDEVNSQEPELFDCSDELLKLLAKYAPLHELMLE LMERLEESSSINVFGAYLRALQVVLQRQGRDKPQAVEWSLNSIFTHLKDLPLPEYLSE GYDEAQARLIEQNEQVEDLLAHYITVGLFREPLRDEILQQDVRTPSQIFRDCGVNRRN IFTCFFIQLLGRPLALLEMNHAKEDLTRSYVQQVTESLTQDANQFLGDPFYLLNLVEQ RARWLRKLDASRGVYEMSCQNVFLIEEKLPLHAVAMYYHSLFVGNQLPTNAPKVYAPL FLFETIVYLAEVLLRQQEPPLQYCGLRLVEHHLSTLQHSVPTSSLQLDVHKRFCEALC KIVGYSPQVALRQLGIHVLRQFVLAFDDHGKYLILKNLMGTLQHGGLMGYLGGMYKDL VDKALGQSGPMPEVYSGKLFREMLLLCVCVLPHDVKSDLLLHSDRLCHALNILRYFAA RDKNDVTGFWQALPEIEKELLDPLGTALNFSMAHYKAYKERVEKGQSASDDELMQRQL NMLAVNISNSGMAGGDAESKLPDIGRQEKLDVLASSITSLETLQSLYLRAREIIEQSA RLRRVANPSDA" ORIGIN 1 gtgcgaaaga aaggggggag agagagagag agagagctag taaagggaac tgctgactgt 61 caaatgccgg cggccttaga tttttcgact attttcaata aaattgtgaa ataccagtga 121 aaaattaaag caaataaata aaatgcagga gcaggagatg gaggtggaag tgggggaccc 181 ggcaaaggcg tcgaatttgc tgcggctcat caagcagctg ctgctggaaa aagcttacga 241 tggcgtgcgg atgttgtttc aaagtgccca ggaatcggaa aagaacactc ggctgctgcc 301 ccacatagcc atggatctat accatgacgt gtgcttggaa aacatttccg acgaggtgaa 361 ctcccaggag ccagaactat tcgactgctc tgacgagctg ctcaagctgc tggccaagta 421 cgccccactg catgagctta tgctggaact gatggagcgc ttggaagaga gtagcagtat 481 caatgtgttc ggcgcctatc tgcgggccct acaagttgtg ctgcagcgac agggacgcga 541 caagccgcag gccgttgagt ggagcctgaa tagcatcttc acccatctca aggatttgcc 601 cctgcccgaa tacctctccg agggctatga cgaggcccaa gcgcgactca tagagcaaaa 661 cgaacaggtg gaggaccttc tggctcacta catcaccgtg ggactctttc gggagccgct 721 ccgcgatgaa attctgcagc aggatgtgcg gacacccagc caaatattca gggattgcgg 781 cgtcaaccgg cgcaacatat tcacttgctt cttcattcag ctgttgggac gtccgttggc 841 cctgctggag atgaatcacg ccaaggagga ccttacgaga tcctacgtgc agcaggttac 901 ggaaagcctg actcaggatg ccaaccagtt cctgggggat cccttctacc tgctcaacct 961 cgtggaacag cgtgccagat ggctaaggaa actagatgcc tcgagaggcg tctacgagat 1021 gagttgccag aatgttttcc tcatcgagga gaaacttccg ctgcatgctg tagccatgta 1081 ctatcactcg ctgttcgtgg gtaaccaact gcccacaaac gcaccaaagg tatatgcacc 1141 tttattccta ttcgaaacga ttgtctatct ggctgaagtg ctactcaggc agcaggagcc 1201 tcccctacaa tattgtggtc ttcgattagt ggaacatcat ttgagtacct tgcagcactc 1261 agttcccacc agctccctcc agctggatgt ccacaagcgc ttttgcgaag ccctttgcaa 1321 gattgtgggc tattcgccgc aggtcgcact tcggcagttg ggaattcatg tgctcaggca 1381 atttgttctg gccttcgatg atcatggaaa gtatctcatc cttaaaaatc tgatggggac 1441 attgcagcac ggcggactaa tgggctacct cggagggatg tacaaggacc ttgttgacaa 1501 ggcgctaggg caatctggtc ccatgccgga agtttatagc ggaaagctct tccgcgagat 1561 gttgctgctc tgcgtctgtg tgctgcccca tgacgtgaaa tccgatcttc ttctgcactc 1621 cgatcgcctg tgtcatgctc tgaatatcct acgctacttt gcggcaagag acaagaatga 1681 tgtgactggc ttctggcagg ctctgccgga aattgaaaag gaattgctgg acccactggg 1741 aacagcgctt aacttttcga tggcccatta caaggcgtac aaggagcgcg tcgaaaaggg 1801 tcagagtgct tcggatgatg aactaatgca gcgccaactc aacatgctcg ccgtcaacat 1861 aagcaatagc ggaatggctg gcggcgacgc ggagagcaag ctgcccgaca ttggacggca 1921 ggagaagctc gatgtgctgg ccagttccat taccagcttg gaaacgctac aatctttata 1981 tctgcgcgcc agagagatca tcgaacagtc cgctcgcctg cgacgggttg ccaatccatc 2041 agatgcttag cttgtagttt gtccacaatg aaagcgaaat gataacgtaa actgtgtgta 2101 aacagaaccg aaaacgaaat cgaaacttaa actgatctat gtggtctgtg ggttcttggc 2161 tggggcgata attaaccgac taattgagcc agttgtggtg tgctaactaa ctggccagcg 2221 atgcgggctt tgcattgcga tctgcgcact gaaatctagt tgcacacaaa taggtacaca 2281 taggtgtgcg tacttaacac ctaagctggc agcgtttttc taatttttat agccatttta 2341 aatatgtttt tgtatttcaa atatatgaat tagctaggc //