Dbfetch
LOCUS NM_164331 3930 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster complexin (cpx), transcript variant H, mRNA. ACCESSION NM_164331 VERSION NM_164331.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3930) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3930) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3930) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3930) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3930) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3930) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3930) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3930) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3930) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3930) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3930) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3930) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3930) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3930) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3930) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3930) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3930) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3930) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3930) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3930) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3930) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3930) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3930) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3930) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jul 15, 2014 this sequence version replaced NM_164331.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3930 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3930 /gene="cpx" /locus_tag="Dmel_CG32490" /gene_synonym="BcDNA:GH27718; BcDNA:HL04936; BcDNA:RH26459; BcDNA:RH31085; CG32490; Cpx; CPX; dmCplx; DmCpx; Dmel\CG32490" /note="complexin; Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org" /map="82A1-82A3" /db_xref="FLYBASE:FBgn0041605" /db_xref="GeneID:64877" CDS 726..1154 /gene="cpx" /locus_tag="Dmel_CG32490" /gene_synonym="BcDNA:GH27718; BcDNA:HL04936; BcDNA:RH26459; BcDNA:RH31085; CG32490; Cpx; CPX; dmCplx; DmCpx; Dmel\CG32490" /note="CG32490 gene product from transcript CG32490-RH; CG32490-PH; cpx-PH; complexin" /codon_start=1 /product="complexin, isoform H" /protein_id="NP_730804.2" /db_xref="FLYBASE:FBpp0078539" /db_xref="GeneID:64877" /db_xref="FLYBASE:FBgn0041605" /translation="MAAFIAKQMVGNQLSAVKGAVGGDGGDDGDDKEKAEEEERERQE AIKEAEDRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTP EELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ" ORIGIN 1 aatcagtgcg atattgcaga gtgtagcgtg cattggtgtg gggaaagtac ccaagccctg 61 tggttctccg tgaccgactg tttaggtaga ccccacggtc cgcggtccgc cctccttccg 121 cgcaagtccc ccacgccagc ggtctaatgg ccagtggact atgtccccag cctttaatgc 181 cctagtggcc aggtcgtgac tatcatacta aacaatgagc ttcgctttgt cgagccataa 241 gtaataagca atttgtggag gaaaaattat ctcacgctgt gcagcaagga cttgctggag 301 tgaacttcag ttgtatacgg gcgaggaagg cagctaacct cccattcagt gccaatccac 361 caagctgtct gccaaaacgc tatgaaatta taattgattg agcggaaaac aatgacgcca 421 tcttagtcgg ccatattgga agcctatctg cctaatgcac gctcttcaca gtggatttcc 481 ttagaacaaa cacatttcgc gcagactagt cggaactttg ctcctcatca accaagtcca 541 cgcactcaca ggaatcttca agcaaaatct gaaaggaata cttgctgaac taaggccagc 601 ttaccgagca cccaggaccc agcaaccggg actcaggagc cagcgcggac acaagtgcat 661 ctcttcgagc ggaagcagag gaccacaacc aggcgcagcc acgcccctag agcgacagcc 721 caaagatggc ggccttcata gctaagcaga tggttggaaa ccaattaagt gccgttaaag 781 gcgctgtagg aggtgatgga ggcgatgatg gcgacgacaa ggaaaaggca gaggaggagg 841 agagggagcg tcaggaggcc atcaaggagg ccgaggaccg ccgaaaggaa aagcaccgga 901 aaatggagga ggagcgcgag aagatgaggc aagacattcg cgataagtac aacatcaaga 961 agaaggagga gatcgtggag gcggcccccc aagaagagcc caatcccctg atgcggaaaa 1021 agaagacgcc cgaggaactc gccgccgaag cggagcagga agagctcgac gattttacaa 1081 aactgaaaaa tcaaatagaa acgcaagtaa atgagctaaa aactcaaata gagggaaaat 1141 gtgtcatgca gtgatatgtc agtcaccata ataacagata aataaatatg atgataaaac 1201 acgtgtaata ctgataacat agcccataaa cggaaattaa tttaactcaa cttaatattg 1261 aatttgttaa tatgagatca gttcatttac atgggaacca taaatgaatt aaaactactg 1321 cgaatctaga gcgtaatata actttacccg gcagcagcat aacgcctttt aaacactaaa 1381 tctcaaaatc gacgacagct ataattcgaa atgcataatc aaaatccgaa cgaggcggtg 1441 aactttatga attttaaagt agctaaatcg cgtaccaaat catttaaatc ccaactatag 1501 tgaaagcctt taataatatt caaatcactt tgctacgata ataatgtaat atactcaaac 1561 ccaatataca atacataatc gttgtttagc tgataacata caacaaaaag taacgaaata 1621 atgaatatat tgaatcggca cgatgacact cgaatgcaaa tagaaaaaag aataataaaa 1681 taacataaaa caaaaatacc aatcctaaaa aacattaagc caatggtgcg acagaggagg 1741 ctaccgagtt tgtcgagccg tcgaagtaca tacatatgtt gctgaaatca cactggactt 1801 gaaatccatc tataagtata gatatacata ttataaaata aatcggcgaa catgttagaa 1861 tggtcattca aatacacccg ttgtgtatat atgtaaattt caagaatttt actaggagta 1921 ataatacttg caaacgaatt gactgcagga tacgttaaaa tggctgattc tctaaattgt 1981 ttttcataac caagaaaaaa tggttacaaa tatatgaaaa aagattcagt caatttgttt 2041 ttcaacgttt gactcaaaca tctttaacag ctgttacatt ttgttttttt cttatacaaa 2101 catcatacct acacaacaat tgagaatttc gaactctttg agacagttaa tgatctctct 2161 gattgatgct tctgaaataa caacatatgc aaaaacacga aacaacaaca atatcaacta 2221 ttacaacaac atcaacaaca attctaccaa ttcttcacaa ctacgtcttg atggtcccac 2281 ttagacatgt tctctcggtg ttttataagt ttcatcaaca acagccagaa caacagcaca 2341 agaaaacgcc tacagccagt acaagaacaa catcaacaac aacatcaact acagaagaat 2401 ccaaatatgt attataagag atgaacaata ctttccaagc aaacagtaga tgaaaacaac 2461 aagctgcatg aacaacagca tcaactaaat cagatcattg caatttgcag gccagcattc 2521 cctatcttat ttctgaacat tgtgaataaa ttcggatgtg gtttaccaaa tatgccaaac 2581 caaacaggct catatatata ccatacatgg tcactaatca ccagcaatca aatggctata 2641 tggtgttgca aatgctttaa ataatgtaca gatccaataa aaagcaacga aatatgcata 2701 tacatctgtg caacattcat tagaagtcac ttaattaaag agctaaatat gacattctgt 2761 actcacaata gaaagctaaa cttccaaatc ccaaaagaga gtttcaagat atcagttaga 2821 gcttcgtgtc acaatgcttc ttaaaattct caacatcatg tttttcataa gtcggtggga 2881 cagcgataaa gcaaccaggc ttaacgccct tctctgtcaa tctaataaag caatcctcta 2941 gtgcccctcg ctccatacag agttaggaac gatcaaacta atgaatgaat gccttaacgt 3001 ggctcaaatg actagaccat gaatagcgaa tagttgatga taagaaaagt tgattctacc 3061 ctaagaaagc aatttgccag cccttgcttt gtttccctat tgtctgttac tgaacctgca 3121 cccagaaatg tatcttagct atgatccttt taaactcaaa actaacagtc tataaagaaa 3181 ccgcttttca aatacttata gaaaatgttt acctagattc tactatatga attgcgtttt 3241 gtctcagata tttatatacg attgaaggcc actttaattg ttcaatatgg tgaacgaact 3301 aacacataat taaaaccaac acaacttatt gaagcatact attcaatctt aaccaagttt 3361 taacgttatc ataaatgttt aaagtgttaa atggttcagc cgctttcgtt ttcatttata 3421 atttgttaat actatgttaa cgtttaaaat atagtattga aaatgtaatc atatgtatat 3481 cagaaagttc acgaaaccac agattattaa atattaatat ctatctatat atatgtatat 3541 atatatacat gtatatatac atatatgtat atatgtatat atgtatatat gtatatatgt 3601 atatatgtat atatgtatat atatatatac atatacatat atacatatgt atatttatat 3661 atatgtgtga atatgtgtaa cttaatagga aaatgaattt aatagagaaa caacagacaa 3721 aaattataaa taatgttgaa aagaatacca ttcaagtcat tattagatgt gaaagacgtt 3781 ctatacccag caaaacagaa acaaaaacat aagaaaatcg ttaatagttg attaattata 3841 ttgttacttt gaacatttaa ctaaaacgaa cgaaaaacaa aagatgctat aataaaaaag 3901 tatatatgtt taaatatata tgagaaacac //