Dbfetch
LOCUS NM_164329 3577 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster complexin (cpx), transcript variant I,
mRNA.
ACCESSION NM_164329
VERSION NM_164329.3
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 3577)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3577)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 3577)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 3577)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 3577)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 3577)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 3577)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 3577)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 3577)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 3577)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 3577)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 3577)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 3577)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 3577)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 3577)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 3577)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 3577)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 3577)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 3577)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 3577)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 3577)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 3577)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 3577)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 3577)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033777).
On Jul 15, 2014 this sequence version replaced NM_164329.2.
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3577
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="3R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..3577
/gene="cpx"
/locus_tag="Dmel_CG32490"
/gene_synonym="BcDNA:GH27718; BcDNA:HL04936;
BcDNA:RH26459; BcDNA:RH31085; CG32490; Cpx; CPX; dmCplx;
DmCpx; Dmel\CG32490"
/note="complexin; Annotated by Drosophila Heterochromatin
Genome Project, Lawrence Berkeley National Lab,
http://www.dhgp.org"
/map="82A1-82A3"
/db_xref="FLYBASE:FBgn0041605"
/db_xref="GeneID:64877"
CDS 373..801
/gene="cpx"
/locus_tag="Dmel_CG32490"
/gene_synonym="BcDNA:GH27718; BcDNA:HL04936;
BcDNA:RH26459; BcDNA:RH31085; CG32490; Cpx; CPX; dmCplx;
DmCpx; Dmel\CG32490"
/note="CG32490 gene product from transcript CG32490-RI;
CG32490-PI; cpx-PI; complexin"
/codon_start=1
/product="complexin, isoform I"
/protein_id="NP_730802.1"
/db_xref="FLYBASE:FBpp0078538"
/db_xref="GeneID:64877"
/db_xref="FLYBASE:FBgn0041605"
/translation="MAAFIAKQMVGNQLSAVKGAVGGDGGDDGDDKEKAEEEERERQE
AIKEAEDRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTP
EELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ"
ORIGIN
1 aatcagtgcg atattgcaga gtgtagcgtg cattggtgtg gggaaagtac ccaagccctg
61 tggttctccg tgaccgactg tttaggaagc ctatctgcct aatgcacgct cttcacagtg
121 gatttcctta gaacaaacac atttcgcgca gactagtcgg aactttgctc ctcatcaacc
181 aagtccacgc actcacagga atcttcaagc aaaatctgaa aggaatactt gctgaactaa
241 ggccagctta ccgagcaccc aggacccagc aaccgggact caggagccag cgcggacaca
301 agtgcatctc ttcgagcgga agcagaggac cacaaccagg cgcagccacg cccctagagc
361 gacagcccaa agatggcggc cttcatagct aagcagatgg ttggaaacca attaagtgcc
421 gttaaaggcg ctgtaggagg tgatggaggc gatgatggcg acgacaagga aaaggcagag
481 gaggaggaga gggagcgtca ggaggccatc aaggaggccg aggaccgccg aaaggaaaag
541 caccggaaaa tggaggagga gcgcgagaag atgaggcaag acattcgcga taagtacaac
601 atcaagaaga aggaggagat cgtggaggcg gccccccaag aagagcccaa tcccctgatg
661 cggaaaaaga agacgcccga ggaactcgcc gccgaagcgg agcaggaaga gctcgacgat
721 tttacaaaac tgaaaaatca aatagaaacg caagtaaatg agctaaaaac tcaaatagag
781 ggaaaatgtg tcatgcagtg atatgtcagt caccataata acagataaat aaatatgatg
841 ataaaacacg tgtaatactg ataacatagc ccataaacgg aaattaattt aactcaactt
901 aatattgaat ttgttaatat gagatcagtt catttacatg ggaaccataa atgaattaaa
961 actactgcga atctagagcg taatataact ttacccggca gcagcataac gccttttaaa
1021 cactaaatct caaaatcgac gacagctata attcgaaatg cataatcaaa atccgaacga
1081 ggcggtgaac tttatgaatt ttaaagtagc taaatcgcgt accaaatcat ttaaatccca
1141 actatagtga aagcctttaa taatattcaa atcactttgc tacgataata atgtaatata
1201 ctcaaaccca atatacaata cataatcgtt gtttagctga taacatacaa caaaaagtaa
1261 cgaaataatg aatatattga atcggcacga tgacactcga atgcaaatag aaaaaagaat
1321 aataaaataa cataaaacaa aaataccaat cctaaaaaac attaagccaa tggtgcgaca
1381 gaggaggcta ccgagtttgt cgagccgtcg aagtacatac atatgttgct gaaatcacac
1441 tggacttgaa atccatctat aagtatagat atacatatta taaaataaat cggcgaacat
1501 gttagaatgg tcattcaaat acacccgttg tgtatatatg taaatttcaa gaattttact
1561 aggagtaata atacttgcaa acgaattgac tgcaggatac gttaaaatgg ctgattctct
1621 aaattgtttt tcataaccaa gaaaaaatgg ttacaaatat atgaaaaaag attcagtcaa
1681 tttgtttttc aacgtttgac tcaaacatct ttaacagctg ttacattttg tttttttctt
1741 atacaaacat catacctaca caacaattga gaatttcgaa ctctttgaga cagttaatga
1801 tctctctgat tgatgcttct gaaataacaa catatgcaaa aacacgaaac aacaacaata
1861 tcaactatta caacaacatc aacaacaatt ctaccaattc ttcacaacta cgtcttgatg
1921 gtcccactta gacatgttct ctcggtgttt tataagtttc atcaacaaca gccagaacaa
1981 cagcacaaga aaacgcctac agccagtaca agaacaacat caacaacaac atcaactaca
2041 gaagaatcca aatatgtatt ataagagatg aacaatactt tccaagcaaa cagtagatga
2101 aaacaacaag ctgcatgaac aacagcatca actaaatcag atcattgcaa tttgcaggcc
2161 agcattccct atcttatttc tgaacattgt gaataaattc ggatgtggtt taccaaatat
2221 gccaaaccaa acaggctcat atatatacca tacatggtca ctaatcacca gcaatcaaat
2281 ggctatatgg tgttgcaaat gctttaaata atgtacagat ccaataaaaa gcaacgaaat
2341 atgcatatac atctgtgcaa cattcattag aagtcactta attaaagagc taaatatgac
2401 attctgtact cacaatagaa agctaaactt ccaaatccca aaagagagtt tcaagatatc
2461 agttagagct tcgtgtcaca atgcttctta aaattctcaa catcatgttt ttcataagtc
2521 ggtgggacag cgataaagca accaggctta acgcccttct ctgtcaatct aataaagcaa
2581 tcctctagtg cccctcgctc catacagagt taggaacgat caaactaatg aatgaatgcc
2641 ttaacgtggc tcaaatgact agaccatgaa tagcgaatag ttgatgataa gaaaagttga
2701 ttctacccta agaaagcaat ttgccagccc ttgctttgtt tccctattgt ctgttactga
2761 acctgcaccc agaaatgtat cttagctatg atccttttaa actcaaaact aacagtctat
2821 aaagaaaccg cttttcaaat acttatagaa aatgtttacc tagattctac tatatgaatt
2881 gcgttttgtc tcagatattt atatacgatt gaaggccact ttaattgttc aatatggtga
2941 acgaactaac acataattaa aaccaacaca acttattgaa gcatactatt caatcttaac
3001 caagttttaa cgttatcata aatgtttaaa gtgttaaatg gttcagccgc tttcgttttc
3061 atttataatt tgttaatact atgttaacgt ttaaaatata gtattgaaaa tgtaatcata
3121 tgtatatcag aaagttcacg aaaccacaga ttattaaata ttaatatcta tctatatata
3181 tgtatatata tatacatgta tatatacata tatgtatata tgtatatatg tatatatgta
3241 tatatgtata tatgtatata tgtatatata tatatacata tacatatata catatgtata
3301 tttatatata tgtgtgaata tgtgtaactt aataggaaaa tgaatttaat agagaaacaa
3361 cagacaaaaa ttataaataa tgttgaaaag aataccattc aagtcattat tagatgtgaa
3421 agacgttcta tacccagcaa aacagaaaca aaaacataag aaaatcgtta atagttgatt
3481 aattatattg ttactttgaa catttaacta aaacgaacga aaaacaaaag atgctataat
3541 aaaaaagtat atatgtttaa atatatatga gaaacac
//