Dbfetch
LOCUS NM_163887 1659 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster modifier of mdg4 (mod(mdg4)), transcript
variant L, mRNA.
ACCESSION NM_163887
VERSION NM_163887.2
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 1659)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1659)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 1659)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 1659)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 1659)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 1659)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 1659)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 1659)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 1659)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 1659)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 1659)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 1659)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 1659)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 1659)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 1659)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 1659)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 1659)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 1659)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 1659)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 1659)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 1659)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 1659)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 1659)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 1659)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033777).
On Jul 15, 2014 this sequence version replaced NM_163887.1.
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..1659
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="3R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..1659
/gene="mod(mdg4)"
/locus_tag="Dmel_CG32491"
/gene_synonym="BcDNA:GH07769; BcDNA:SD03001; bpd; CG15500;
CG15501; CG15802; CG18151; CG32491; CG7836; CG7859;
CG8076; Dmel\CG32491; doom; Doom; E(var)129; E(var)3-93D;
E(var)93D; E-(var)3-93D; E-var(3)1; E-var(3)3; l(3)03852;
l(3)j2B7; l(3)L3101; LBC; mdg4; mmd4; mnm; mnn; mod; mod
(mdg4); mod(gypsy); Mod(mdg 4); Mod(mdg 4)67.2; mod(mdg)4;
Mod(mdg)4; mod(mdg-4); mod(mdg4; Mod(mdg4); MOD(MDG4);
mod(mdg4)-58.8; mod(mdg4)-67.2; Mod(mdg4)-67.2;
Mod(mdg4)2.2; MOD(MDG4)56.3; mod(mdg4)67.2; Mod(mdg4)67.2;
mod-mdg4; mod2.2; Mod2.2; MOD2.2; Mod67.2; modMDG4;
mod[mdg4]; Mod[mdg4]; pf-2; R5_3R:17176815..17177103"
/trans_splicing
/note="modifier of mdg4"
/map="93D6-93D9"
/db_xref="FLYBASE:FBgn0002781"
/db_xref="GeneID:49228"
CDS 159..1589
/gene="mod(mdg4)"
/locus_tag="Dmel_CG32491"
/gene_synonym="BcDNA:GH07769; BcDNA:SD03001; bpd; CG15500;
CG15501; CG15802; CG18151; CG32491; CG7836; CG7859;
CG8076; Dmel\CG32491; doom; Doom; E(var)129; E(var)3-93D;
E(var)93D; E-(var)3-93D; E-var(3)1; E-var(3)3; l(3)03852;
l(3)j2B7; l(3)L3101; LBC; mdg4; mmd4; mnm; mnn; mod; mod
(mdg4); mod(gypsy); Mod(mdg 4); Mod(mdg 4)67.2; mod(mdg)4;
Mod(mdg)4; mod(mdg-4); mod(mdg4; Mod(mdg4); MOD(MDG4);
mod(mdg4)-58.8; mod(mdg4)-67.2; Mod(mdg4)-67.2;
Mod(mdg4)2.2; MOD(MDG4)56.3; mod(mdg4)67.2; Mod(mdg4)67.2;
mod-mdg4; mod2.2; Mod2.2; MOD2.2; Mod67.2; modMDG4;
mod[mdg4]; Mod[mdg4]; pf-2; R5_3R:17176815..17177103"
/EC_number="3.1.3.4"
/trans_splicing
/note="CG32491 gene product from transcript CG32491-RL;
CG32491-PL; mod(mdg4)-PL; modifier of (mdg4) 67.2;
enhancer of variegation 93D; branch point disrupted; late
boundary complex; Modifier67.2; modifier of mdg4; modifier
of mdg4 67.2; modifier of mdg4 in meiosis; modifier of mdg
4 67.2; modifier of midget4; mod(mdg4 isoform N);
Mod(mdg4)-67.2; modifier mdg4"
/codon_start=1
/product="modifier of mdg4, isoform L"
/protein_id="NP_732629.1"
/db_xref="FLYBASE:FBpp0083470"
/db_xref="GeneID:49228"
/db_xref="FLYBASE:FBgn0002781"
/translation="MADDEQFSLCWNNFNTNLSAGFHESLCRGDLVDVSLAAEGQIVK
AHRLVLSVCSPFFRKMFTQMPSNTHAIVFLNNVSHSALKDLIQFMYCGEVNVKQDALP
AFISTAESLQIKGLTDNDPAPQPPQESSPPPAAPHVQQQQIPAQRVQRQQPRASARYK
IETVDDGLGDEKQSTTQIVIQTTAAPQATIVQQQQPQQAAQQIQSQQLQTGTTTTATL
VSTNKRSAQRSSLTPASSSAGVKRSKTSTSANVMDPLDSTTETGATTTAQLVPQQITV
QTSVVSAAEAKLHQQSPQQVRQEEAEYIDLPMELPTKSEPDYSEDHGDAAGDAEGTYV
EDDTYGDMRYDDSYFTENEDAGNQTAANTSGGGVTATTSKAVVKQQSQNYSESSFVDT
SGDQGNTEAQAKDQNKGVLLKRTAQGEFLVVNGKSYKKTRAMQYRTYFHCLTRNCPTY
YVLVELSRRPRLTRHHEHAQHCLQCY"
ORIGIN
1 taacacttct aattttcacg tcaaagaact cggacgcgtt ctgcgtgtcg gccgcgctag
61 caaaaaactc tggctttagt tagttatttt attggaaaaa tatttagtca agagccaaca
121 aacgcataga tacagaaaag tattgatttt cgtccaagat ggcggacgac gagcaattca
181 gcttgtgctg gaacaacttc aacacgaatt tgtcggccgg cttccacgag tcgctatgcc
241 gcggcgacct ggtggacgtc tcgctggccg ccgagggcca aatagtgaag gcccaccgat
301 tggtgttatc cgtctgctcg cccttcttcc gcaagatgtt cactcagatg ccgtcgaaca
361 cccacgctat cgtattcctg aacaacgtca gccactcggc gctgaaggac ctcatccaat
421 tcatgtactg cggcgaggtc aacgtgaagc aggacgccct gcccgcgttt attagcaccg
481 cggaatcgct gcaaatcaag gggctaacgg ataacgatcc tgcgcctcag ccgccgcagg
541 aatccagccc gccgccagca gcacctcatg tacaacaaca gcaaataccg gctcagcggg
601 tgcagcgcca gcagcctcgc gcctccgccc gctacaagat cgagaccgtg gacgacggcc
661 tgggcgacga gaaacagagc accacccaga tcgtcatcca gaccacggcc gcaccccaag
721 ccaccattgt acaacagcag caaccgcagc aggcggcgca gcagatccaa tcgcagcagc
781 tgcagacggg aaccacgacg acggcgacgc tggtgtcgac aaacaaacgc tctgcccagc
841 gctcctccct gacccccgcc tcctcgagcg ccggcgtaaa gcgctccaag acaagcacct
901 ccgcaaatgt tatggaccct ctcgactcga ccactgaaac tggagccacg acaaccgccc
961 aacttgtgcc gcaacagatc accgtgcaaa cctctgtggt ctctgcggca gaagcaaagc
1021 tccaccagca atcgccgcag caggttcgac aggaggaagc cgagtacatt gatctcccca
1081 tggaattgcc cacgaaatct gaacctgact actctgagga ccatggcgac gccgccggcg
1141 atgccgaggg cacctatgtg gaggacgata cttacggaga catgcgctac gacgacagct
1201 acttcactga aaacgaggat gctggcaacc agactgcggc aaatacgagc ggtggcggag
1261 tgacggcgac cacttccaag gctgtggtca agcaacagtc ccagaactac agtgaatcat
1321 cgtttgtcga caccagcggg gatcagggca acacagaggc tcaagcaaaa gaccagaaca
1381 agggcgtcct cttgaagcgc accgctcagg gcgagttcct ggtggtcaac gggaagtctt
1441 acaaaaaaac ccgcgccatg cagtaccgca cctacttcca ttgcttgacc aggaactgcc
1501 cgacctacta cgtcctcgtg gagctgagcc gacgacctcg actcaccagg catcatgagc
1561 acgcccagca ctgtctgcag tgctattagg atgtaggatg tgtatgtagt cataggccga
1621 atccgcaatg tacaatatac cgaataccat tttaccatt
//