Dbfetch
LOCUS NM_163881 1839 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster modifier of mdg4 (mod(mdg4)), transcript variant AF, mRNA. ACCESSION NM_163881 VERSION NM_163881.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1839) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1839) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1839) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1839) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1839) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1839) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1839) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1839) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1839) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1839) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1839) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1839) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1839) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1839) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1839) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1839) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1839) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1839) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1839) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1839) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 1839) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1839) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 1839) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 1839) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jul 15, 2014 this sequence version replaced NM_163881.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1839 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1839 /gene="mod(mdg4)" /locus_tag="Dmel_CG32491" /gene_synonym="BcDNA:GH07769; BcDNA:SD03001; bpd; CG15500; CG15501; CG15802; CG18151; CG32491; CG7836; CG7859; CG8076; Dmel\CG32491; doom; Doom; E(var)129; E(var)3-93D; E(var)93D; E-(var)3-93D; E-var(3)1; E-var(3)3; l(3)03852; l(3)j2B7; l(3)L3101; LBC; mdg4; mmd4; mnm; mnn; mod; mod (mdg4); mod(gypsy); Mod(mdg 4); Mod(mdg 4)67.2; mod(mdg)4; Mod(mdg)4; mod(mdg-4); mod(mdg4; Mod(mdg4); MOD(MDG4); mod(mdg4)-58.8; mod(mdg4)-67.2; Mod(mdg4)-67.2; Mod(mdg4)2.2; MOD(MDG4)56.3; mod(mdg4)67.2; Mod(mdg4)67.2; mod-mdg4; mod2.2; Mod2.2; MOD2.2; Mod67.2; modMDG4; mod[mdg4]; Mod[mdg4]; pf-2; R5_3R:17176815..17177103" /trans_splicing /note="modifier of mdg4" /map="93D6-93D9" /db_xref="FLYBASE:FBgn0002781" /db_xref="GeneID:49228" CDS 159..1658 /gene="mod(mdg4)" /locus_tag="Dmel_CG32491" /gene_synonym="BcDNA:GH07769; BcDNA:SD03001; bpd; CG15500; CG15501; CG15802; CG18151; CG32491; CG7836; CG7859; CG8076; Dmel\CG32491; doom; Doom; E(var)129; E(var)3-93D; E(var)93D; E-(var)3-93D; E-var(3)1; E-var(3)3; l(3)03852; l(3)j2B7; l(3)L3101; LBC; mdg4; mmd4; mnm; mnn; mod; mod (mdg4); mod(gypsy); Mod(mdg 4); Mod(mdg 4)67.2; mod(mdg)4; Mod(mdg)4; mod(mdg-4); mod(mdg4; Mod(mdg4); MOD(MDG4); mod(mdg4)-58.8; mod(mdg4)-67.2; Mod(mdg4)-67.2; Mod(mdg4)2.2; MOD(MDG4)56.3; mod(mdg4)67.2; Mod(mdg4)67.2; mod-mdg4; mod2.2; Mod2.2; MOD2.2; Mod67.2; modMDG4; mod[mdg4]; Mod[mdg4]; pf-2; R5_3R:17176815..17177103" /EC_number="3.1.3.4" /note="CG32491 gene product from transcript CG32491-RAF; CG32491-PAF; mod(mdg4)-PAF; modifier of (mdg4) 67.2; enhancer of variegation 93D; branch point disrupted; late boundary complex; Modifier67.2; modifier of mdg4; modifier of mdg4 67.2; modifier of mdg4 in meiosis; modifier of mdg 4 67.2; modifier of midget4; mod(mdg4 isoform N); Mod(mdg4)-67.2; modifier mdg4" /codon_start=1 /product="modifier of mdg4, isoform AF" /protein_id="NP_732623.2" /db_xref="FLYBASE:FBpp0310324" /db_xref="GeneID:49228" /db_xref="FLYBASE:FBgn0002781" /translation="MADDEQFSLCWNNFNTNLSAGFHESLCRGDLVDVSLAAEGQIVK AHRLVLSVCSPFFRKMFTQMPSNTHAIVFLNNVSHSALKDLIQFMYCGEVNVKQDALP AFISTAESLQIKGLTDNDPAPQPPQESSPPPAAPHVQQQQIPAQRVQRQQPRASARYK IETVDDGLGDEKQSTTQIVIQTTAAPQATIVQQQQPQQAAQQIQSQQLQTGTTTTATL VSTNKRSAQRSSLTPASSSAGVKRSKTSTSANVMDPLDSTTETGATTTAQLVPQQITV QTSVVSAAEAKLHQQSPQQVRQEEAEYIDLPMELPTKSEPDYSEDHGDAAGDAEGTYV EDDTYGDMRYDDSYFTENEDAGNQTAANTSGGGVTATTSKAVVKQQSQNYSESSFVDT SGDQGNTEAQDIIRKRGIMIVKGTKGKPKLLMGGYEYYRNNSRGSKTYWLCARNRYMR CAARIITCSVTGELIIKNQQHNHDTLNQPKTEIKEKPLSSSLKSKDPEH" ORIGIN 1 taacacttct aattttcacg tcaaagaact cggacgcgtt ctgcgtgtcg gccgcgctag 61 caaaaaactc tggctttagt tagttatttt attggaaaaa tatttagtca agagccaaca 121 aacgcataga tacagaaaag tattgatttt cgtccaagat ggcggacgac gagcaattca 181 gcttgtgctg gaacaacttc aacacgaatt tgtcggccgg cttccacgag tcgctatgcc 241 gcggcgacct ggtggacgtc tcgctggccg ccgagggcca aatagtgaag gcccaccgat 301 tggtgttatc cgtctgctcg cccttcttcc gcaagatgtt cactcagatg ccgtcgaaca 361 cccacgctat cgtattcctg aacaacgtca gccactcggc gctgaaggac ctcatccaat 421 tcatgtactg cggcgaggtc aacgtgaagc aggacgccct gcccgcgttt attagcaccg 481 cggaatcgct gcaaatcaag gggctaacgg ataacgatcc tgcgcctcag ccgccgcagg 541 aatccagccc gccgccagca gcacctcatg tacaacaaca gcaaataccg gctcagcggg 601 tgcagcgcca gcagcctcgc gcctccgccc gctacaagat cgagaccgtg gacgacggcc 661 tgggcgacga gaaacagagc accacccaga tcgtcatcca gaccacggcc gcaccccaag 721 ccaccattgt acaacagcag caaccgcagc aggcggcgca gcagatccaa tcgcagcagc 781 tgcagacggg aaccacgacg acggcgacgc tggtgtcgac aaacaaacgc tctgcccagc 841 gctcctccct gacccccgcc tcctcgagcg ccggcgtaaa gcgctccaag acaagcacct 901 ccgcaaatgt tatggaccct ctcgactcga ccactgaaac tggagccacg acaaccgccc 961 aacttgtgcc gcaacagatc accgtgcaaa cctctgtggt ctctgcggca gaagcaaagc 1021 tccaccagca atcgccgcag caggttcgac aggaggaagc cgagtacatt gatctcccca 1081 tggaattgcc cacgaaatct gaacctgact actctgagga ccatggcgac gccgccggcg 1141 atgccgaggg cacctatgtg gaggacgata cttacggaga catgcgctac gacgacagct 1201 acttcactga aaacgaggat gctggcaacc agactgcggc aaatacgagc ggtggcggag 1261 tgacggcgac cacttccaag gctgtggtca agcaacagtc ccagaactac agtgaatcat 1321 cgtttgtcga caccagcggg gatcagggca acacagaggc tcaagatata atacgcaagc 1381 gaggtataat gattgtcaag ggcaccaaag gaaagcccaa actgctgatg ggcggctacg 1441 agtattatcg caacaattcg cggggctcca aaacgtattg gctttgtgct cggaatcgat 1501 acatgcgctg cgctgctcga attatcacgt gctcggtgac tggggagctg attatcaaga 1561 accagcaaca caaccacgac acactcaacc agcccaaaac tgaaataaag gagaaaccac 1621 tgtcctctag ccttaagtct aaagatcccg agcattagcc aatgcacccc gctccattct 1681 gcttcaaagt caactcgatg tacccatctt atttatactc tatctacata taagggtaaa 1741 gcaatttatt ttagttcgtt tagactaatg acatgtatgt gtttaggtat cgcgtgtatt 1801 agttaagacc ttgctacaaa gttatcaagt gcatgcctt //