Dbfetch
LOCUS NM_143795 3750 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster regulator of eph expression, transcript variant A (Reph), mRNA. ACCESSION NM_143795 VERSION NM_143795.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3750) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3750) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3750) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3750) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3750) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3750) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3750) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3750) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3750) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3750) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3750) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3750) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3750) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3750) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3750) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3750) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3750) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3750) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jan 16, 2013 this sequence version replaced NM_143795.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3750 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3750 /gene="Reph" /locus_tag="Dmel_CG3920" /gene_synonym="CG3920; Dmel\CG3920; l(2)k16918; reph" /note="Regulator of eph expression" /map="24C5-24C5" /db_xref="FLYBASE:FBgn0021800" /db_xref="GeneID:47399" CDS 265..1320 /gene="Reph" /locus_tag="Dmel_CG3920" /gene_synonym="CG3920; Dmel\CG3920; l(2)k16918; reph" /note="CG3920 gene product from transcript CG3920-RA; CG3920-PA; Reph-PA; lethal (2) k16918; regulator of eph expression" /codon_start=1 /product="regulator of eph expression, isoform A" /protein_id="NP_652052.1" /db_xref="FLYBASE:FBpp0077186" /db_xref="GeneID:47399" /db_xref="FLYBASE:FBgn0021800" /translation="METSVAGQKPIASAMMCHQQTSSSCAHLMYDQHSSEEELEVING PSSQAGQHPGTAATGSSCASRISNRGCTSSLDTEAPYEERATTSNSKRSSSTLMVENR KRSLAHSSDDELRNSLEPILTPVNFRTSPPLEAFKPNRSHMMFRSTTPLILSEARCGI ENIKLCDNSVNEENGDNGGGGGAANSSKCAKIGALAGNASGTVAATGNGNGGNENEPS VIKACSSSLKMSNSSHHIYQPQPKYSFHYNSSRSSPASTTGLDMEVRSVSPPAKLFHC AISPRRRPSNNASGAAGGATTISPSSASSSSGTTTTHNAANSAGNAANVTAVATQRLQ RPHRPCLDFDKMQQVSL" ORIGIN 1 gccattcatc gtttttcact cgccgccgtt ggtccgtttt tccgctggtt ttcctgcaat 61 tccacaaccg aaaaaatcta ataaatttaa tttcctaata aaatacacaa ttttgtgatc 121 aaacaaaagg aaaaccaaca tctatagagg gagacggaga tacgcgagag agagcgagcg 181 aatcaacgtg aatcgaatga ctctggcacc gaatctgatg gtgaactcct cgatgtggaa 241 aaccaacgtc acttagacgt ggatatggaa actagtgttg ctggccaaaa accaatagct 301 tctgcaatga tgtgtcacca gcagacgtcg tcatcctgcg cccatctcat gtacgaccag 361 cacagttccg aggaggagtt ggaggtgatc aacgggccgt cctcgcaggc gggtcagcat 421 cccggaacgg cggccacggg ctcatcgtgt gcctcccgga tctcgaatcg cggatgcacc 481 tcctcgctgg acacggaggc gccctacgag gagcgggcca ccacctccaa ctcgaagcgt 541 tctagctcca cgctgatggt ggagaaccgc aagcgatcgc tggcccacag ctccgacgat 601 gagttgcgca actcgctgga gccgatattg acgcccgtga attttcgcac atcgccgcca 661 ttggaggcat tcaagccaaa tcgtagccat atgatgttcc gctccacaac gccactgata 721 ttatcggagg cccgatgtgg catcgaaaat attaaattat gtgataatag tgtaaacgag 781 gagaatggtg acaacggcgg tggcggtggc gcggccaata gcagtaagtg cgccaagatt 841 ggcgcactgg cagggaatgc cagcggaact gtggccgcaa ccggaaacgg aaacggcggc 901 aacgagaatg agccgagtgt gatcaaggcg tgcagcagct cgctaaagat gagcaacagc 961 agccaccaca tttaccagcc gcagccgaaa tatagtttcc actacaacag ctcgcggagc 1021 agtccggcca gcaccactgg cctggatatg gaggtgcgtt cggtcagtcc gccggcgaaa 1081 ctgttccact gcgccatatc gcccaggcgg cgacccagta acaatgccag tggtgcagcc 1141 gggggcgcca caacaatatc accatcgtca gcatcatcat catcaggcac aacaacgaca 1201 cacaatgctg ccaattccgc cggaaatgcc gctaacgtca ccgccgtcgc cacccagaga 1261 ctgcagcgac cgcatcggcc gtgtttagat tttgataaga tgcagcaggt tagtctctaa 1321 tgcagagcac gctaacacca gagcagcagc cggaaaagga tcgtcgtcgg attgggacgg 1381 ggagcaggat ggtcaacgga acggggggca aatcaaagac tttttatacg aaccaacaac 1441 cacagcagga cgctgaaact gaaacagcat tcggaggata accagagtgt ctaggggcag 1501 ctagtaaaac ccctagatta tgcaagcgag cagtttcagg attcagattc aagcgcaaac 1561 agcagcggga aatatcatca aatcaaatta tataaatcta aaggtaattc aaattttaac 1621 gcaaaccaaa aaacacaaaa aagagacaaa cctaaaattt acaatagatg cagctatttt 1681 ttcacaattt taaactgaaa aactgtaaca aaaactgtaa tgcgaacacg gatcgaaagt 1741 tgaggaggac aaacaataga tttgtagaag ctccgggatg taaaagatcg aaagttgagt 1801 caaaattgag ggtttagaga cggaaaatca tatgccagcc gtatgataga aaggatcaca 1861 agaattgatt aaaaatatgt tcaaggaaaa gctctgggtg taatgaatta gatgataaaa 1921 atccagccag tggaaactgt gaactgtaaa tattgtattt gtgtgggaaa aaccaaaaaa 1981 aaaaaaaaaa tcttttgaag aattggcatg ccatcgatag cagaaaatgc gatatgggga 2041 tgtagaacga tagaatgtat ttaaattttt ttaaaagccg acgaaaaacg tttgtgctga 2101 tgtggcagaa gactcaaact tgaaaaaaaa aaaacagaga caaattatat ttctataaaa 2161 cgaaggaaag ctgagaaaag cggaagcggc tagcgggaaa gcgggaaatt tgaaaggtat 2221 ggacgatgaa atagcaacag caacaatgtg aagcaacaat agcaactgaa ataatatgat 2281 ataaacagac aaacagaacc ttttgtatga tcaacgtggg ggggagccgg aaaacgaaac 2341 tgtcgcagcg acagttgaaa agcagtaaaa ttatgtgttt aatgtacaac ataaaatagc 2401 aagctatttt atacacaata ttcaatttat ccacatctaa gagaaacgat ttaaaccaaa 2461 aagctgccat caacactcat gcatacgatt aaagctcttt agtttaaaca atatgattga 2521 tgattgcttg gtggacaact agtaagcgca acaactaaac aattggcaaa tgtttgcaag 2581 ctcatatgtg tattagtaaa gcataattac tacccttctt tgtcgcgtat atgaagaatc 2641 taacgaaaga aacaaaagag atcacagcaa gttaaaccca tattcaattc aaggaaaacc 2701 aaatgaaatg caaaaactaa gaactaaaaa aaaaaccagt aacgtgtgca accatagcaa 2761 agcaaaagta aacgaaacat acttttttaa gtaccatata tatgtaaaag caaacaatga 2821 tgatgcaagt cagagcgaaa tattcaatgt aatgctaatt ttaaatcata tttactaacg 2881 aaaggcaggc taaaatttca gttaactcga atcgaagagt agtcagtcaa tggaatcgca 2941 gtgtttcgta tgctaatttt caataataac caaccgacca tctcatgccc actaaaaacg 3001 tttcacacac cccacaatca acacaggaga cactcgatac actcaaccta ccaagacaag 3061 cataatccac accaccaaga caccaagaat ctatgtatgt aataatagcg gggaatcgaa 3121 gctggaggag ttaggatcag gctgggagat gcgaagtgca gatatgatac tgatactagg 3181 aatgcagttt tcgtaatttt taattaatta aacaaaatgc aagcgaggat gagacagatg 3241 aattatatta tatatgtgta acaaatggga gaatcggagg atatcatgga ctgagcgtac 3301 attaaagcgt ggaaaagata ggaagctggt gaatcagcca atactaggat tttagtttat 3361 aagctctgaa gcgaaagcga aaggaagtta cagtgagaga atagaatggc taacaaatac 3421 ggaaagcaca cacaaatcta tggaatgtat ggctgcgggg cgtttatgtt gaatattttt 3481 gagaaacaaa acaaaaacga cgaaaaaaaa aagcgaagaa accaattatg ttgtaaacaa 3541 agaatacaaa gatttcattg cgttttgggc ccgctgacag gcgcccaaac acttgtgttg 3601 tacatagtta cattattaat aacaatatat atacttactc attaacaatt aagtcgacga 3661 acggtacaag tgcaaaaaga gagagacaga tgtgtgaaaa acaaaaacat ttgagaaaaa 3721 aaaaacgaat gaaatgaaga tgacaagacg //