Dbfetch
LOCUS NM_143631 3015 bp mRNA linear INV 26-DEC-2023
DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant
A (CG1910), mRNA.
ACCESSION NM_143631
VERSION NM_143631.3
DBLINK BioProject: PRJNA164
BioSample: SAMN02803731
KEYWORDS RefSeq.
SOURCE Drosophila melanogaster (fruit fly)
ORGANISM Drosophila melanogaster
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE 1 (bases 1 to 3015)
AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
Strelets,V., Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: Impact of
High-Throughput Data
JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015)
PUBMED 26109357
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3015)
AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
Russo,S.M. and Gelbart,W.M.
CONSRTM FlyBase Consortium
TITLE Gene Model Annotations for Drosophila melanogaster: The
Rule-Benders
JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015)
PUBMED 26109356
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 3015)
AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
TITLE The Release 6 reference sequence of the Drosophila melanogaster
genome
JOURNAL Genome Res 25 (3), 445-458 (2015)
PUBMED 25589440
REFERENCE 4 (bases 1 to 3015)
AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
TITLE Sequence finishing and mapping of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1625-1628 (2007)
PUBMED 17569867
REFERENCE 5 (bases 1 to 3015)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
TITLE The Release 5.1 annotation of Drosophila melanogaster
heterochromatin
JOURNAL Science 316 (5831), 1586-1591 (2007)
PUBMED 17569856
REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE 6 (bases 1 to 3015)
AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
Ashburner,M. and Anxolabehere,D.
TITLE Combined evidence annotation of transposable elements in genome
sequences
JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005)
PUBMED 16110336
REFERENCE 7 (bases 1 to 3015)
AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
Celniker,S.E., Rubin,G.M. and Karpen,G.H.
TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly
JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002)
PUBMED 12537574
REFERENCE 8 (bases 1 to 3015)
AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
Rubin,G.M., Ashburner,M. and Celniker,S.E.
TITLE The transposable elements of the Drosophila melanogaster
euchromatin: a genomics perspective
JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002)
PUBMED 12537573
REFERENCE 9 (bases 1 to 3015)
AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
Rubin,G.M. and Lewis,S.E.
TITLE Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review
JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002)
PUBMED 12537572
REFERENCE 10 (bases 1 to 3015)
AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
Gibbs,R.A. and Rubin,G.M.
TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence
JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002)
PUBMED 12537568
REFERENCE 11 (bases 1 to 3015)
AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
TITLE The genome sequence of Drosophila melanogaster
JOURNAL Science 287 (5461), 2185-2195 (2000)
PUBMED 10731132
REFERENCE 12 (bases 1 to 3015)
AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
Smith,E., Yu,C. and Rubin,G.
CONSRTM Berkeley Drosophila Genome Project
TITLE Drosophila melanogaster release 4 sequence
JOURNAL Unpublished
REFERENCE 13 (bases 1 to 3015)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 14 (bases 1 to 3015)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 15 (bases 1 to 3015)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 16 (bases 1 to 3015)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 17 (bases 1 to 3015)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 18 (bases 1 to 3015)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 19 (bases 1 to 3015)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 20 (bases 1 to 3015)
CONSRTM FlyBase
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological
Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE 21 (bases 1 to 3015)
AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
Park,S., Svirskas,R. and Karpen,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 22 (bases 1 to 3015)
AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
Svirskas,R. and Rubin,G.
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
64-121, Berkeley, CA 94720, USA
REMARK Direct Submission
REFERENCE 23 (bases 1 to 3015)
AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
CONSRTM Drosophila Heterochromatin Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE 24 (bases 1 to 3015)
AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This
record is derived from an annotated genomic sequence (NT_033777).
On Jul 15, 2014 this sequence version replaced NM_143631.2.
##Genome-Annotation-Data-START##
Annotation Provider :: FlyBase
Annotation Status :: Full annotation
Annotation Version :: Release 6.54
URL :: http://flybase.org
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3015
/organism="Drosophila melanogaster"
/mol_type="mRNA"
/db_xref="taxon:7227"
/chromosome="3R"
/genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
gene 1..3015
/gene="CG1910"
/locus_tag="Dmel_CG1910"
/gene_synonym="1A3; anon-EST:fe1A3; anon-WO0118547.398;
anon-WO0118547.745; anon1A3; Anon1A3; Dmel\CG1910"
/map="100D2-100D2"
/db_xref="FLYBASE:FBgn0022349"
/db_xref="GeneID:43741"
CDS 364..1833
/gene="CG1910"
/locus_tag="Dmel_CG1910"
/gene_synonym="1A3; anon-EST:fe1A3; anon-WO0118547.398;
anon-WO0118547.745; anon1A3; Anon1A3; Dmel\CG1910"
/note="CG1910 gene product from transcript CG1910-RA;
CG1910-PA; anon-fast-evolving-1A3"
/codon_start=1
/product="uncharacterized protein, isoform A"
/protein_id="NP_651888.1"
/db_xref="FLYBASE:FBpp0085198"
/db_xref="GeneID:43741"
/db_xref="FLYBASE:FBgn0022349"
/translation="MSEATVAQKPEAVEDVNASTGDEKQTPKRTPKRRSFIERAQKES
EELVRTMGGSLELAGGRRTRSSTRGTPTRAAEAVTPPPSKKARTSPASATKASAGKGR
GARKLDVGADEPEPELEKEKEKVQTSVKGKGAVKKDKKEVKKQEKATEKYAPEEAKED
VAEAKEEDASPAGVQDQPDGVENLPSVAEAKQNHVDEVKPISEEPGNSSEEVPKAEEP
LKSSGETSENGAATETAAAPKEPASVMDVDEDETLVENTPSANKEKALDDEKEPEQKS
EEHAAAVLESKEQNEPAKEPTPEPMEVDGSSKGSSDTAQVDTPAIENVSAAPETEAAA
KTTESSNDVVEVATEGKETVLEVPAAEPKEAESTVESAEELTETSTVVVTEPKEAASS
EEEPSKVVDSAEPKEAESNTDESATPVPIDVSTAPASNDVSKPLEIDTTLVKTADSPA
KEPQEICEVKKAEINVNGEPKIVNSSAEVGENAAPKVCN"
ORIGIN
1 gtacaaattg tgcagcacta gcaagaagca gtttagttac gtttactccg tagaagcgcg
61 atacaaaaaa gtcaataaaa gggtgaaaag cgaacgttct agacacagaa agtattcaaa
121 aatactgact cagtcctggc gcagcatcgg tgaccaaaag agcggctctt cacggtgaaa
181 agtttccgca aaatcggcat ttctgaaagt tgcgcgttca cggtatgcga agcgtggcgt
241 gtgtgtcgag ttgagttacc tgtaattgtg tgcgcctgcg agagtggaag tggagtaaac
301 ctcgccaccg ttttgaagtt ttggaaagat atagggataa ccgcccagcg tttattttaa
361 acaatgtcgg aggcaactgt ggcccaaaag ccggaggcgg tggaagatgt gaatgcgtcg
421 acgggggacg agaagcagac tcccaaacgc actcccaaac gccgctcgtt cattgagcgg
481 gcgcagaagg aaagcgagga gcttgtgcga acaatgggcg gaagcctgga gctggcgggc
541 gggcggcgga cgcggtctag cactcgagga acgccgacgc gagccgccga ggcagtgacg
601 ccgccaccca gcaaaaaggc gcgcacttcg ccggcctcgg ccacaaaggc cagtgcagga
661 aagggacgcg gagcacgtaa gctagacgta ggcgctgatg agcccgagcc tgagctggag
721 aaggagaagg agaaggtaca gacctcggtc aagggaaagg gagctgtcaa gaaggacaag
781 aaagaggtca agaagcagga gaaggcaact gagaaatatg cgccggagga ggcaaaggaa
841 gatgtagctg aggcaaaaga ggaagacgcc agtcccgccg gggtccagga ccaaccggat
901 ggtgtggaga atcttccttc agtggcggaa gcgaagcaga atcatgtcga tgaagtcaaa
961 ccaatatcag aagaacctgg gaattcaagc gaagaggtgc caaaagctga agagcccctc
1021 aagtcgagcg gagaaacgtc ggagaatgga gccgctacag agactgccgc tgcacctaaa
1081 gaacctgctt ctgttatgga tgtggacgaa gatgagacgc tcgtcgaaaa cacaccatcc
1141 gcaaataaag aaaaggcatt agatgacgaa aaagaaccag aacagaagtc agaggaacat
1201 gcagcagcag ttttggagtc caaggagcaa aatgagccag ccaaggagcc cacaccagaa
1261 cctatggaag tggacggaag ttcgaagggc agttcggaca ccgctcaagt agacacacca
1321 gccatcgaaa acgtttctgc cgctccagaa acagaagcag cagcaaagac tacggagtct
1381 agcaatgatg tggtggaagt ggccacagag ggcaaagaaa cagttttaga agtgcccgct
1441 gccgagccca aggaagccga aagcactgta gagtccgcgg aagagcttac ggaaaccagc
1501 accgtggtgg tgactgagcc gaaggaagcc gccagcagcg aagaggagcc tagcaaggtt
1561 gtggactctg cggaacccaa ggaggcagag agcaatacgg atgagagcgc cacgcccgtt
1621 cctattgatg tttctaccgc ccccgcatcc aatgatgtca gcaagccctt ggaaatcgat
1681 acaaccttgg ttaagactgc cgacagtcct gcaaaggaac cacaggaaat ctgcgaggtc
1741 aagaaggccg aaattaatgt aaatggtgag cccaagatcg tcaacagttc cgccgaggtg
1801 ggcgagaatg ctgcgcccaa agtgtgtaac taaaccaatc ccaccgatgg acaatcaaca
1861 actttaatgc gttgcagatg tgtaaaaaag cgtcttcatc tcgcccgccg agttggtctg
1921 atgttgccaa ctacatgcaa acatttaaga gttcccccaa acaaagctac aatattcttt
1981 tttaattgat aacttgattt cgtactccga aatcccttaa ctttgataat agttcgcgtc
2041 ctccagtatt tggttgacgc gaaggacgcc ataggctgca atcgatgctg gactttcaat
2101 gctgcggtgt gtgcgtcagc tggacagaaa aacaaaaaaa aaaagtaccc taagaccctc
2161 ccacccactc cccccgaaat gcacagacag attgtaaaat gcatcttaat ataatatgta
2221 tgtggataat taatcaaatt ggaatcaaac aaattataca ttaacggaaa atgtatgtaa
2281 aatagatgtt tttaaattgt aagccattaa tatccttaat tataaaacca attggacaac
2341 actcaaaaaa taagcaaacg gatcgcggac atatttaaac tattgtaaca caatacaaat
2401 ggtctgcggc tttaagatac gtctatgcat aactttcacc ctttttggac atttttttaa
2461 gtatttcaag cccgtttcgt ttgaagcatt taagttttta aagatccaaa tgagctcatt
2521 ggaaactgtt gtgttaggca aaggtctctt ccgggcgatc tctcctaact taattcgtaa
2581 atacaggcta gagtacgagg aaactttttc aatgaaaaga agagaaacac aaattctaat
2641 agtaatacta atgataaata atataataca cacagcaaaa gcgtatatta gttttggaag
2701 ccgttgcaac tgaaatgatc agtcagaccg tttttgtatg tagcatatct tctgtataag
2761 gcattcttca tttcaatatt cttttgtaaa taaatcttaa atatatacaa gagaaattaa
2821 acttgtttgg ccattatgaa aatggattcg gtattgtatc ttgtcgtatg ctatatgtgt
2881 tttgcgtttg agaattttag ttcctaattg aattgatgtc tctcgagaat tttttttgtt
2941 tggataaagt ctaattcata aacatgtcat tttatttcag aaatagtcgt tactaaatat
3001 taaagcaatc ttatt
//