Dbfetch
LOCUS NM_143343 3037 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster mitoferrin (mfrn), mRNA. ACCESSION NM_143343 VERSION NM_143343.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3037) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3037) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3037) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3037) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3037) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3037) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3037) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3037) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3037) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3037) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3037) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3037) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3037) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3037) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3037) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3037) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3037) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3037) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3037) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3037) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3037) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3037) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3037) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3037) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_143343.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3037 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3037 /gene="mfrn" /locus_tag="Dmel_CG4963" /gene_synonym="anon-EST:fe2H5; CG4963; Dmel\CG4963; dmfrn; HD35059; Mfrn" /note="mitoferrin" /map="98B6-98B6" /db_xref="FLYBASE:FBgn0039561" /db_xref="GeneID:43353" CDS 712..1851 /gene="mfrn" /locus_tag="Dmel_CG4963" /gene_synonym="anon-EST:fe2H5; CG4963; Dmel\CG4963; dmfrn; HD35059; Mfrn" /note="CG4963 gene product from transcript CG4963-RA; CG4963-PA; mfrn-PA; anon-fast-evolving-2H5" /codon_start=1 /product="mitoferrin" /protein_id="NP_651600.1" /db_xref="FLYBASE:FBpp0084635" /db_xref="GeneID:43353" /db_xref="FLYBASE:FBgn0039561" /translation="MNIDDYESLPTTSVGVNMTAGAIAGVLEHVVMYPLDSVKTRMQS LSPPTKNMNIVSTLRTMITREGLLRPIRGASAVVLGAGPAHSLYFAAYEMTKELTAKF TSVRNLNYVISGAVATLIHDAISSPTDVIKQRMQMYNSPYTSVVSCVRDIYKREGFKA FYRAYGTQLVMNLPYQTIHFTTYEFFQNKMNLERKYNPPVHMAAGAAAGACAAAVTTP LDVIKTLLNTQETGLTRGMIEASRKIYHMAGPLGFFRGTTARVLYSMPATAICWSTYE FFKFYLCGLDADQYKSSITGSSEPRKADYVLPRTTDEEQIDQEREAAKEKDTTATLHS APTSVNASGAIKTVCELSTRPAGPTINLHTRHTDVKSPYERGFST" ORIGIN 1 cccgctgcgg tcactctggg cacgaggctt gtttattggg cgaaatttaa tgattcgctg 61 taatcataca acatttgcgt cagttgccaa acaccgaccc agccaaaatt ccgcttcggc 121 cacaaaccga ctcttatata ttcataaaac aaccgatccg cagccgccac tccagcagca 181 gcagcttagc cgcgagcaac taaaccagaa attgcttcct cgcgtgaatc gttgaatcgg 241 ggaatcgtct ctatgtcgtc tgtatgctag tcgtgcaaca gcagtgtcaa ttagcagttt 301 cgcataagac cacctcacgc gtacactctg caccaccacc gccaccgccg ccgcctccgc 361 cagcagcacc accccccgaa atacacccgc ccgtgcgtcc gtgaatcgtc gtgttatccg 421 tgttatacaa caaaattgca ccaaaagtgc ccgacatacg ccggccaaga gttgcccgct 481 aaccaacgcc gatcctcgac aggcggagcg acccgatccc agcggagaaa gcggctctgc 541 agcagcaact gcaacagcga cttggcagaa ctggtccgga ttagcaggtt gtcgtaagag 601 gagcagcgac tgcaagggcg caaccacagc attagcacac aacacagtcg atagtgcagc 661 cccaccagca gcctcaacaa tcgaaagcga cggcaaccgt tcggatccac catgaacatc 721 gacgactacg aatcgctgcc caccaccagt gtgggtgtca atatgacggc gggcgcaatt 781 gcgggcgtgc tggagcatgt ggtcatgtat ccgctggact ccgtcaagac gcgaatgcag 841 agcctttcac cgcccacaaa aaacatgaac atagtgtcaa cccttcggac tatgatcacg 901 cgtgaaggcc tgttaagacc cattcgggga gccagcgccg tggtgctggg tgctggacca 961 gcacactcgc tatactttgc cgcctacgag atgaccaagg agctcacggc caagttcaca 1021 tcggtgagaa acctcaacta cgtgatttcg ggagcggtgg ccaccctcat acacgacgcc 1081 atttctagtc ccacggatgt gatcaaacag cgtatgcaga tgtacaactc gccctacaca 1141 tcggtggtat cctgcgtgcg ggatatctac aagagggaag gcttcaaggc cttctaccgg 1201 gcatatggca cgcaactggt catgaatcta ccatatcaga caatacattt taccacatac 1261 gagtttttcc agaacaaaat gaatctggaa cgcaaataca atccaccagt gcatatggca 1321 gcgggtgcag cagccggtgc gtgtgcggcg gctgtaacca cgcccctgga cgtgatcaag 1381 acgctactaa atactcagga gacaggactg acgcgcggca tgatcgaggc cagtcgaaag 1441 atctaccaca tggccggtcc attgggcttc tttaggggca cgaccgcccg cgttctgtac 1501 tcaatgcccg ccacggccat ctgctggtcg acgtacgagt tcttcaagtt ctacctgtgc 1561 ggcctggacg ctgatcagta caaatcgtca attacgggca gctcggagcc ccgcaaagcg 1621 gactacgtgc tgccgaggac tacggatgag gagcagatcg atcaggagcg cgaggcggca 1681 aaggagaagg acaccacggc caccctgcac tctgccccga cctcggtcaa tgcctccggt 1741 gccattaaga cggtgtgcga gctgtcgacg cggcccgccg ggccaacaat caatctgcac 1801 acgcggcaca cggacgtgaa gagtccctac gagcggggct tcagcacgta ggcgtcgccg 1861 gtgggcgtgg ccgcgagcgg ggccggcgtt cgaaacgttt gcagcagcag cgacagctaa 1921 acctaagcgt agctattagt tggcggtagg aaatgggatg atggctgggg tggatccagg 1981 gcaggggcca cctgggcagg cggggacgac acggtgttcg aaatacctgc cgttccgcca 2041 aaccaccgcc tggccactgc cccaccaccg gcccgcccgg acccagctgc ttgtatgaat 2101 actctgcgag gagtcggtga gagagtttta tcactccata gtcggaggtt aaatcgtagt 2161 tgttgttctg cacaaaactc tcgctctcac acacaacacg caaacacaca cacacacaca 2221 ccctatacac acacaatatg acatttttag gcaaagtgcg aaattcttgt taaaagtata 2281 tgctaatgat gatactgtat ctatgttact ttgaaatgag ataaccttct tgtaaaatac 2341 tattacctat gtattacaac ctttgattta caacaattat atatatattt tttttaaaca 2401 attttcaaat gatatacgca tatacataca tatatttatg ttgatcgttg taaagtaatc 2461 aagagcaaaa atgtaaagca cacgctcgcg cggcagaagg aaaaattcaa taatttgtaa 2521 tcaaattaca gccgaaatct tcaaactgag atgttacaaa atataaggaa cagcagatac 2581 agcagaaaac agctcccaga gaactacgtc tcccccagac ctacaatgcc ccataatcta 2641 cacccggtac tataactaac cagccccatg tagagagccg tagcctagct atgtccattg 2701 tccttgctcc acgcactcga ctgtttcgat ctatcatcac acattatcct cgtctcagtg 2761 ctagagttcc acatccttga gtagcagacg cagttgagtg ccggggatca aggctagtgg 2821 atcgcccaaa atatacaata atgcatcata ttattacgtt cactgttatt tttgtttata 2881 tatatgcata atatatatgg atatgctgca ccggcgacta ttaaactgta aggtgtagcg 2941 ctaaattaca attttattgt taaagaattc aaacgaaaaa aaaacaagcg gaagcaaaac 3001 cattggcaag cgaaatggcc cattaaacgg atgaaag //