Dbfetch
LOCUS NM_142486 3299 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster choline transporter, transcript variant A (ChT), mRNA. ACCESSION NM_142486 VERSION NM_142486.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3299) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3299) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3299) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3299) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3299) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3299) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3299) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3299) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3299) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3299) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3299) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3299) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3299) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3299) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3299) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3299) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3299) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3299) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3299) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3299) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3299) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3299) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3299) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3299) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jul 15, 2014 this sequence version replaced NM_142486.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3299 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3299 /gene="ChT" /locus_tag="Dmel_CG7708" /gene_synonym="CG7708; Dmel\CG7708; dSLC5A15" /exception="dicistronic gene" /note="Choline transporter" /map="91C1-91C1" /db_xref="FLYBASE:FBgn0038641" /db_xref="GeneID:42245" CDS 827..2671 /gene="ChT" /locus_tag="Dmel_CG7708" /gene_synonym="CG7708; Dmel\CG7708; dSLC5A15" /note="CG7708 gene product from transcript CG7708-RA; CG7708-PA; ChT-PA" /codon_start=1 /product="choline transporter, isoform A" /protein_id="NP_650743.1" /db_xref="FLYBASE:FBpp0083083" /db_xref="GeneID:42245" /db_xref="FLYBASE:FBgn0038641" /translation="MINIAGVVSIVLFYLLILVVGIWAGRKKQSGNDSEEEVMLAGRS IGLFVGIFTMTATWVGGGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPMRK QGYITMLDPLQDSFGERMGGLLFLPALCGEVFWAAGILAALGATLSVIIDMDHRTSVI LSSCIAIFYTLFGGLYSVAYTDVIQLFCIFIGLWMCIPFAWSNEHVGSLSDLEVDWIG HVEPKKHWLYIDYGLLLVFGGIPWQVYFQRVLSSKTAGRAQLLSYVAAAGCILMAIPP VLIGAIAKATPWNETDYKGPYPLTVDETSMILPMVLQYLTPDFVSFFGLGAVSAAVMS SADSSVLSAASMFARNVYKLIFRQKASEMEIIWVMRVAIIVVGILATIMALTIPSIYG LWSMCSDLVYVILFPQLLMVVHFKKHCNTYGSLSAYIVALAIRLSGGEAILGLAPLIK YPGYDEETKEQMFPFRTMAMLLSLVTLISVSWWTKMMFESGKLPPSYDYFRCVVNIPE DVQRVGDPSESGEQLSVMAGPLARSYGAATMAGKDERNGRINPALESDDDLPVAEARR INQETAQAQVKKMLDNATGVKPSGGGGGHLQSQSGMAMPTAEQDNTAF" ORIGIN 1 tcagttataa tttcgtcgct ctaaccgcca acacggtccg acggctgaac gtggagacgt 61 gtttttagtt taccaataga ccgtagtcaa ctgctcgttt gtttttacca aaaaccgaat 121 ggctttagtt tgattgctta attcattttc aaatatcgat ctgattggat tcagtccacc 181 ttgaagttgg gttcgattta atagcccacg cgattgcatt tcaaacaagc cgaaggcttg 241 tcagcaccac ttgaacgaac gtgtgggtgg ttggttttct tttttttttt ttatatataa 301 tctggaacat tttcgacaac ttctcgggtg cgaagctaca tagtggcatt ggttttgatg 361 tggccgacac gcgtttcccc aacagccgga gcacatgtgc gggttacatt ttaggacgcg 421 taacagcccg tctcagaaga cgtccctccg ctggggcgac tgctgtctag cctagtctag 481 tctagtgttc cgaccgccat tcgtgttcct tggccggaga cctcatcctc gagttcgatt 541 ccctcgcgac tcactgcgtt caagctagta ctactacggg gcagcccgca tccaccaaga 601 gcccgtttgg aacaggaaat gttgcataag tcgaggcgca tttgattggc gcgcttcttt 661 gattgtcgtc gctaagctcc acaatcgaaa attggcgtcc gcttgaactt ggcgcacaaa 721 tcgcaagaca gagctagaag gtcaacccca ttttgagagt atttggttac agcagcgcgt 781 ggagaacctt aagtttcgta gccaaggaca cgactgaact gcaaggatga tcaatatcgc 841 tggcgtggtg agcatcgtgc tcttctacct cctgatcctg gtcgttggca tttgggccgg 901 tcgcaagaag cagtccggca atgattcgga ggaggaggtc atgctggccg gacgctccat 961 cggcctcttc gtgggcatct tcaccatgac ggccacctgg gtgggtggcg gctacatcaa 1021 cggcacggcg gaggctatat acacatcggg tctggtgtgg tgccaggctc catttggata 1081 cgctctaagc ttggtatttg gtggcatctt ctttgccaat cccatgcgca agcagggtta 1141 catcaccatg ttggatccgt tgcaggattc ctttggtgag cggatgggag gattgctctt 1201 cctgcccgct ctatgcggtg aggtcttttg ggcagccggc atcctggctg cacttggcgc 1261 cactctatcg gtgatcatcg acatggatca ccgcacctcg gtgatcctgt cctcctgcat 1321 cgccatcttc tacacactgt tcggtggact gtactccgtg gcgtatacgg acgtgatcca 1381 gttgttctgc atcttcatcg gtctgtggat gtgcattccc ttcgcctgga gcaacgagca 1441 cgtgggcagc ctgagtgacc tggaggtgga ttggattggg cacgtggagc ctaaaaagca 1501 ttggctgtac atagactacg gcttgctgct cgtctttggt ggcattccct ggcaggtcta 1561 cttccagcgg gtgctgtcca gcaaaacggc aggaagggcc cagcttctgt cctatgttgc 1621 agccgccgga tgcattttga tggccattcc cccggtgctc atcggagcga ttgccaaggc 1681 tacaccttgg aacgagacag attacaaggg accctatccc ctgaccgtgg acgagacgag 1741 catgattctg cccatggtgc tgcagtacct cacgcctgac ttcgtgtcct tctttggatt 1801 gggcgctgtt tccgccgccg tgatgtcctc cgccgactcc tcggtgctct ccgccgcctc 1861 catgttcgct cggaacgtgt acaaattgat tttccgtcag aaggcgtccg agatggaaat 1921 catttgggtg atgcgagtcg ccatcattgt ggtgggcatc ctggctacca tcatggccct 1981 caccattccc tccatctacg gtttgtggtc catgtgctcg gatctggtct acgtcattct 2041 gttcccgcag ctactgatgg tggtgcactt caagaagcac tgcaacacgt acggcagcct 2101 gtcggcatac attgtggccc tggccatccg actgtcgggc ggtgaggcca tcttgggact 2161 ggctccattg atcaagtatc ccggctacga cgaggagacc aaggagcaga tgttcccctt 2221 ccgcaccatg gccatgctgc tcagcctggt cacgctcatc tcggtctcct ggtggactaa 2281 aatgatgttt gagtccggca agttgccgcc cagctacgac tacttccgct gtgtggtcaa 2341 tattccggag gatgtgcagc gtgtgggcga tccctcggag tcgggtgagc agctatccgt 2401 gatggctgga ccgctggccc gatcctacgg agcggccacc atggcgggca aggatgagcg 2461 caatggccgc atcaatcccg ccctggaatc ggacgacgat ctgccggtgg cggaggcacg 2521 tcgcatcaac caggagacgg cgcaggcgca ggtcaaaaag atgctggata acgccactgg 2581 ggtgaagccg tcgggcggag gcggtggtca cctccagagc caaagcggga tggccatgcc 2641 cacggcggag caggacaata cggccttctg agcggagtag cggagaatcc catggcatct 2701 gggcagctga atgcccgaaa ataggctgca gttgatacca gagaattatc cgattttatg 2761 ttgcgcttgt tagggggaca caaatggggg gaagttgggg tcatcagatc gtggaatgga 2821 gtacagaaag tattaggaaa cgtacgttaa acacacaagt gctcaggtaa aaattgcaga 2881 aagctgatcg taaggtttac attttcattt agccaactta ttgtgtatag tttctacaag 2941 cttaaagcgt tgttctatcg gtattcattt tgatgttaga gtatctatct atgtgtaaat 3001 gttcacaagt caattgacga cgaatacata tcaattgcat tttcctagcc cgagaattgc 3061 ctaggaacac gtattaaccc aaaaggagtt agcccagtta aagtggctat ggattaagat 3121 gtatgtataa ccaaagtgac gagcatttga gcaatatgaa ttggcattcc tggcattagc 3181 atatcgatca tatatactat actatataga tgcataaaat gtgaatcatg tgtccttcca 3241 gaacgaacaa agctaagcaa aactaactaa ctaacaaacc aatgcaaacg aaacatatc //