Dbfetch
LOCUS NM_142016 3145 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein (CG8773), mRNA. ACCESSION NM_142016 VERSION NM_142016.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3145) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3145) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3145) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3145) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3145) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3145) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3145) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3145) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3145) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3145) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3145) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3145) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3145) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3145) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3145) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3145) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_142016.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3145 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3145 /gene="CG8773" /locus_tag="Dmel_CG8773" /gene_synonym="Dmel\CG8773" /map="87E4-87E4" /db_xref="FLYBASE:FBgn0038135" /db_xref="GeneID:41634" CDS 43..3027 /gene="CG8773" /locus_tag="Dmel_CG8773" /gene_synonym="Dmel\CG8773" /note="CG8773 gene product from transcript CG8773-RB; CG8773-PB" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_650273.2" /db_xref="FLYBASE:FBpp0288476" /db_xref="GeneID:41634" /db_xref="FLYBASE:FBgn0038135" /translation="MIVTAKLVAIGLGLALTAFTVSTIVLAVQKANLKSDLRDAQEKL DLLEAGYTSTAAPTTASTANPGSTASPGSTAEPGSTAEPGSTAEPGSTASPGSTVTPG STASTSEPGTTASPEKIDYRLPGTLKPTHYDLYLFPNIETGEFSGQETITITVEEATD QIVLHSLNLNISSVSIMNTGSDTLEILETTVDAVREFLIFQLNEPLTKGRTVRLHIGF EGSMANKIVGLYSSSYVKEDETRKWIATSKFEPTYARQAFPCFDEPALKAEFTITLVH PSGEDYHALSNMNVDSSVSQGAFQEVTFAKSVPMSTYLACFIVSDFAYKQVSIDTKGI GETFSMSVYATPEQLDKVDLAVTIGKGVIEYYIDYFQIAYPLPKLDMAAIPDFVSGAM EHWGLVTYRETSLLYDEATSSATNKQRIASVIAHEFAHMWFGNLVTMNWWNDLWLNEG FASFVEYLGVDAVYPEWKMRDQFTVSTLHSVLTLDGTLGSHPIIQTVENPDQITEIFD TITYSKGSSLVRMLEDFLGETTFRQAVTNYLNEYKYSTAETGNFFTEIDKLELGYNVT EIMLTWTVQMGLPVVTIEKVSDTEYKLTQKRFLSNPNDYDADHEPSEFNYRWSIPITY FTSSDSVVQRLWFYHDQSEITVTVPAAVEWIKFNADQVGYYRVNYDTDLWNDLADQLV VQPSAFGSVDRAHLLNDAFALADSTQLPYATAFELTRYLDKETDYVPWSVAASRLTSL KRTLYYTSTYAKYKKYATALIEPIYTALTWTVGEDHLDNRLRVTALSAACSLGLESCL TEAGEQFNAWLAKPEDRPKADVRETVYYYGIQSVGSQEDWDAVWELFVNESDASEKSK LMYGLSAIQIPWILQRYIDLAWNEEYVRGQDYFTCLTYISANPVGESLVWDYVRENWQ RLVDRFGLNERYLGNLIPSITARFSTQTKLEEMEQFFAKYPEAGAGTAARVRALETVK NNIVWLAENLEGVDAWLDKQPL" ORIGIN 1 ttagttgcgc tttggactcc gctcgtgccg gattaacgtg ctatgattgt caccgcgaag 61 ttggtggcca ttgggctggg cctcgcgctc acggccttca ccgtatcgac cattgtcctg 121 gccgtccaga aggcgaatct taagagtgat ttgcgcgatg cccaggagaa gttggatctc 181 ctggaagcgg gatatacgag cacagctgct ccgacaacag cgagtactgc gaatcctgga 241 agcacagctt ctccaggaag cacagctgag ccgggaagca cagctgaacc cggaagcaca 301 gctgagcccg gaagcacagc ttctccagga agcactgtga cacctggttc cactgcttca 361 acaagtgaac ccggcactac tgcatccccc gaaaaaatcg actaccgact gcccggaact 421 ctgaagccca cccactatga tctctatctg tttcccaaca tcgaaactgg tgaattcagt 481 ggacaggaga cgattactat tacagttgaa gaggccaccg accagatcgt cctgcactcc 541 ctcaacctaa acatttcgag tgtatccata atgaatactg gcagtgatac tttggagatc 601 ctggagacaa cagtagatgc tgtgagggaa tttttaatat tccagctgaa cgaaccactg 661 acaaaaggta ggacagtaag gctgcacatt ggattcgaag gatcgatggc caacaagatt 721 gtgggactgt acagttcgtc gtatgtgaag gaggatgaga cccgcaagtg gatcgccacc 781 tccaagttcg aacccaccta cgctcgccag gcttttccct gctttgatga gccagcattg 841 aaggccgagt tcaccattac tctagtgcat ccttctgggg aggattacca tgccctgtcc 901 aacatgaacg tggactcgag tgtcagccag ggagccttcc aggaggtcac gtttgcaaaa 961 agtgttccca tgagcactta cttggcctgc tttattgtct ccgacttcgc ctacaagcag 1021 gtgagcattg acactaaggg cattggagaa accttctcca tgagtgtcta cgccactccg 1081 gagcaactcg acaaagtgga tctggctgtg accattggca agggagtcat cgagtactac 1141 attgactact tccaaatcgc ttatccgctg cccaaactcg atatggctgc tattcccgac 1201 ttcgtctcgg gcgccatgga gcactgggga ttggtcacct acagggaaac atcgcttttg 1261 tacgacgaag ccacgagttc cgccaccaac aagcagcgca tcgccagcgt aattgcccac 1321 gaattcgctc acatgtggtt tggaaacttg gtaaccatga actggtggaa cgatctgtgg 1381 ctaaacgaag gatttgctag tttcgttgag tacttgggcg tagatgccgt ctatccagaa 1441 tggaaaatgc gcgatcaatt cacggtgagc actttgcaca gcgtactcac cttggacgga 1501 accctcggat cccacccgat aatccagacc gtggaaaatc cggaccagat cacggagatt 1561 ttcgatacca tcacgtactc caagggttcc tctctcgtcc gaatgctgga ggatttcctg 1621 ggggagacaa ccttccgcca ggcggttacc aattatttaa atgagtacaa gtactccacg 1681 gcggaaacgg gtaacttctt tacagagatc gacaaactgg aattgggata caatgtcaca 1741 gagattatgc taacatggac ggtgcagatg ggtctgccag tggtcacgat cgaaaaggtg 1801 tccgatacgg aatacaaatt gacgcagaag cgcttcttgt ccaatccaaa cgactatgac 1861 gccgatcacg agccctcgga attcaactac cgttggtcga tccccatcac atatttcacc 1921 agctcggatt cggtggtgca gcgtctgtgg ttttatcatg accagagcga aatcactgta 1981 actgttcccg ctgccgtcga gtggattaag tttaacgccg atcaggtggg ctattatcgc 2041 gttaattacg ataccgatct gtggaatgat ctggccgatc agttggtggt acaaccaagt 2101 gcattcggct ctgtggatcg cgctcatctc ctcaacgatg cttttgccct ggccgattcc 2161 actcagttgc cctatgcaac ggccttcgag ttgaccagat acttggacaa ggagaccgat 2221 tatgttccct ggagtgtggc tgcttcccgt ctgacttcgc ttaagagaac actctactac 2281 accagcacct atgccaagta caagaagtac gccacagctt tgattgagcc catctatacc 2341 gcactcacct ggacagtcgg cgaggatcat ttggataacc gccttcgtgt cactgctttg 2401 agtgccgcct gttctctggg tctggaatcc tgtctcactg aagccggaga gcagttcaac 2461 gcatggctgg ccaagccgga ggatcgtcca aaggccgatg tccgtgaaac tgtctactac 2521 tacggaatac agtccgttgg aagccaggag gattgggatg cagtctggga gctgttcgtc 2581 aacgaatccg atgccagcga gaagtccaaa ctgatgtatg gcctgtctgc catccagatt 2641 ccctggattt tgcagcgcta cattgacctg gcgtggaacg aggaatacgt gaggggtcag 2701 gactacttca cctgccttac ctacatctct gcgaatccag ttggtgagtc cctggtttgg 2761 gactatgtcc gggagaactg gcagcgactg gtggaccgat tcggactcaa cgagcgttat 2821 ttgggcaacc tgattccctc gatcactgcc cgctttagca cccaaaccaa gctggaggag 2881 atggagcaat tcttcgccaa atatccggaa gctggagccg gcacagctgc ccgggtgaga 2941 gctctggaaa cggttaagaa caacattgtt tggctggccg agaacctgga gggtgtggac 3001 gcctggctgg acaagcagcc actgtaaaaa gtccaaggaa gtggtcttgc gaccatggtt 3061 accattaaac atgtactcat ctaattgcca ttataaagca aaaatttgcc gaacaagtgg 3121 aaataaagat aagcttagtt attgg //