Dbfetch
LOCUS NM_141930 2604 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster DNA ligase 3 (DNAlig3), mRNA. ACCESSION NM_141930 VERSION NM_141930.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2604) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2604) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2604) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2604) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2604) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2604) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2604) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2604) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2604) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2604) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2604) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2604) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2604) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2604) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2604) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2604) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2604) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2604) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_141930.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2604 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2604 /gene="DNAlig3" /locus_tag="Dmel_CG17227" /gene_synonym="CG17227; Dmel\CG17227; DNA-ligII; lig 3; lig3; Lig3; LIG3" /note="DNA ligase 3" /map="87B9-87B9" /db_xref="FLYBASE:FBgn0286075" /db_xref="GeneID:41518" CDS 95..2515 /gene="DNAlig3" /locus_tag="Dmel_CG17227" /gene_synonym="CG17227; Dmel\CG17227; DNA-ligII; lig 3; lig3; Lig3; LIG3" /EC_number="6.5.1.1" /note="CG17227 gene product from transcript CG17227-RA; CG17227-PA; DNAlig3-PA; DNA ligase III" /codon_start=1 /product="DNA ligase 3" /protein_id="NP_650187.2" /db_xref="FLYBASE:FBpp0082071" /db_xref="GeneID:41518" /db_xref="FLYBASE:FBgn0286075" /translation="MLLSRLTWQARILTRLLCNKMASKGLHNEDNKLDTFRRICDEIA GESSYLKKAERLQRFFEKGSSGKGFKGDTVLWVQFLIPAANQRVYNLQNKALIKLFSR IFNADQQQMHLDLEQDGDVSETLRKHFAASKKLKPQKQSKLYLQEVEEMLLHLVERTK EDEQTDLLQKLCSKATDLDLRTFIRLVKHDLRINARARHILDAFGPDAYPAYQSSRDL VAIVEQFATKENKNYASSPVKKTKKTSSSAIQVMTPISPMLASPCKSVEDAFKKSPTG LYSEIKYDGERVQIHKQGNDFKFFSRNLKPVVDHKIRALKKYIPQAFPGGGEMILDSE IILVDTDTGALLPFGSLGAHKKQTFANAAVCLFVFDCILYDGEDLTQLPFRKRREILE QNIQPIKSHVQLSESEFLKTTRELAAMTARVLHANLEGVVLKSPTSTYQPGKRNWLKV KKDYLFDGKMADTADLVVLGAWYGSGKKGGTLSIFLMGCYDAFGRLWKTVTKVHSGLD DATNAEVHKSLIKLTERADANAIPSWLLCSKSLVPDVLAKDPMKMPVWEITGAEFTKS DAHTASGISVRFPRITRRRSDKSAKEANDLAHLEDLFEASKSNVNVDLLLANCSKDET AMNNKTTPEKEKKLNGNQSNGSKKLKRSNTGSDDEDGAPVLSKRKESKAIRSLSPSQK GLKDFFKPSKEFKSVVKKEPKEDEGNIESTSSKPQLFEGLVAHFAMEKDSSKLMQQFS QHGGCCTTEPQKADLVFYANTNEALDLEKLRTLYRRSCRHLNVSWLQSCLDTQSRQPF PLHAVMMK" ORIGIN 1 aatattcccg atttatttac tcgtgagtcg aaagtctgtt tgcattgttc tgtgaaatag 61 acaaccacat ttttaatttg caattagtgt gcgtatgcta ttgtccaggc taacgtggca 121 ggccaggatt ctaactcgtc ttctgtgtaa taagatggcc agcaagggat tgcacaatga 181 ggacaacaag ttggacactt tccgtcgcat ctgtgatgaa attgccggcg agtcaagtta 241 cctgaagaaa gcggagagac tgcagcgatt cttcgaaaag gggagcagtg gcaagggctt 301 caagggcgac accgtgctct gggtgcagtt cctcattccg gcggccaatc agcgcgtcta 361 caatctgcag aacaaggcgc tgatcaaact cttttcgcgc atttttaatg cagatcaaca 421 gcaaatgcat ctggatctag agcaggatgg cgacgtttcg gaaactctac gcaagcactt 481 tgctgcttct aagaaactca agccgcaaaa gcagagcaaa ctctatctgc aggaggtgga 541 ggaaatgctc ctgcacctgg tggagcgtac caaagaggat gagcaaacag atctgctaca 601 gaagttgtgc tcgaaggcca ctgacctgga tctgcgcacc tttattcgct tggtgaagca 661 cgacttaaga atcaatgccc gagcccggca catcctggat gcttttggtc ctgatgccta 721 ccccgcatat cagtcttccc gcgatttggt ggcaattgtc gaacagtttg ccaccaaaga 781 aaataaaaat tatgctagta gtcccgttaa gaagactaag aaaacgagct cgagtgcaat 841 tcaggtaatg acacccatat cgcccatgtt ggccagtccc tgcaagtcgg tggaggacgc 901 cttcaagaag agccccactg gactatatag cgagatcaaa tacgatggag agcgagttca 961 aatccacaag cagggcaacg acttcaagtt ctttagtcgc aatctaaagc ctgtggtgga 1021 tcacaagata cgggctctga aaaaatatat tccgcaagcc tttcctggcg gtggcgaaat 1081 gatactggac tctgagatca ttctggtcga cactgacaca ggagcactgc tgccctttgg 1141 ttcgttgggt gcccataaga agcagacttt cgccaatgct gctgtatgct tattcgtctt 1201 cgattgcata ctgtatgatg gcgaggattt gacccagctg ccatttcgca agcgtcgcga 1261 gattcttgag cagaatattc aacccattaa atcccacgtg cagctgtcgg agtcggagtt 1321 cctcaagacc acgagggaac tggccgcgat gacggccagg gtgttacatg ccaatctgga 1381 gggtgtggtc ctaaagagtc caaccagcac atatcagccc ggcaaaagga actggcttaa 1441 ggtcaagaag gattacctat tcgacggaaa gatggctgac accgcggact tggttgtttt 1501 gggtgcttgg tacggatcag ggaagaaagg tggcacgctt agtatttttc tcatgggctg 1561 ctacgatgcg tttgggcgtt tgtggaagac agtgaccaaa gtgcactctg gcttggatga 1621 tgctaccaac gcagaggtac ataaatcact aatcaaacta accgaacgtg ctgatgccaa 1681 cgcaattccc agttggctgt tatgcagtaa gtcccttgta ccagatgtac tggccaagga 1741 tccgatgaaa atgccagtat gggagattac tggcgcagag ttcaccaagt ccgatgccca 1801 taccgcgtct ggaatctcag tacgatttcc caggattact cgtcgtcgca gtgataaatc 1861 agccaaagag gccaatgatc tggcccatct agaagatctt ttcgaggcct caaaatcgaa 1921 tgtaaatgtt gatttacttc tggccaattg tagtaaagat gagacagcaa tgaataacaa 1981 aacaactcct gaaaaggaga aaaaactgaa tggcaatcaa tcaaatggta gtaagaaatt 2041 gaaaaggtcc aatactggtt ctgatgacga agacggagct cctgtgctca gcaaacgcaa 2101 ggagtccaaa gcgattcgaa gcttgtcccc ttcgcaaaag ggattaaagg atttttttaa 2161 gcccagcaag gagtttaaat cagttgtgaa aaaggaacca aaggaggatg aaggcaatat 2221 tgaatccact agctcgaaac cccagttgtt cgaaggattg gtggcacact ttgccatgga 2281 gaaggattca agtaaactga tgcagcagtt ttcacagcat ggaggatgct gtacaacaga 2341 accacaaaaa gctgatctgg tcttttatgc gaatacgaac gaggcattgg acctagagaa 2401 gcttagaacg ctctatcgtc gtagctgccg gcacttgaat gtaagctggc tccaaagctg 2461 tctcgatact cagagtcgtc aaccttttcc cctacacgcc gtgatgatga aatgatgagt 2521 ggtattctaa atcgtttgca ctcagaaatt tgtacatgct tgattaaacc gaacacacat 2581 acatatgtgt gtattattga caac //