Dbfetch
LOCUS NM_141852 3364 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant A (CG12594), mRNA. ACCESSION NM_141852 VERSION NM_141852.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3364) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3364) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3364) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3364) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3364) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3364) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3364) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3364) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3364) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3364) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3364) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3364) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3364) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3364) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3364) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3364) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3364) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3364) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3364) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3364) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3364) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3364) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3364) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3364) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_141852.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3364 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3364 /gene="CG12594" /locus_tag="Dmel_CG12594" /gene_synonym="Dmel\CG12594" /map="86E16-86E17" /db_xref="FLYBASE:FBgn0037941" /db_xref="GeneID:41416" CDS 828..2888 /gene="CG12594" /locus_tag="Dmel_CG12594" /gene_synonym="Dmel\CG12594" /note="CG12594 gene product from transcript CG12594-RA; CG12594-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_650109.1" /db_xref="FLYBASE:FBpp0081905" /db_xref="GeneID:41416" /db_xref="FLYBASE:FBgn0037941" /translation="MRGDDIYSRVHSATPLPLPLHLVLLLFLLVLQLLAPAAATPVNP CPHKGMAELIRNSPVIVKALVARIFADEPEGPVQSLAQDTILITLTPETIYKGASLLK VANGNTDAGNPMSPRVGGLMSWSSGHRSRGGSAGSAGSGGTWSGAESAFQYEGQLNAT LQPLRCFDNNMLKMLPAELIAFGKLLPAATASTGGSPQTARQLQRPPVGGATDVLQVS VNGLHRWTPQFENHIWKHLGWDDWSDFTLCSVTCGQGVQQRFRRCLLDNPLVDINMNI NLEEDDDDDDEDEQAQGADDAGAVAQLSKETDVFGDGNNDLLADEDENELLIMRASGD ESLHKFDQATTTITPQTSVRAHAHPSASPPAPDPMGETSGGNEPPSDDEGAGVGGAGE SVRFVPSAHNDRSGNEVGAGAATGSSAGTRKARASNQHKKRKPTKSVALSTLLCEGYN IEQRNCNSFECSDDISDLLKFYKKLPMGEDLPTQASDASLAPSYPDAYSNLDLTTAGL MGTAFSPTPSTPYNMGYIRSWRNLLNFTLMVTLRAKNDTKSTATIFSIRNATHNLYLE ACKDGLRLYLERDNTTEMLPVKFNLYDYRWHQVAISIQNGDFISIYVDCAWTNSFVVS KRLFTLPVDADVEIGRGFNGELQQLLVLPENQERLQCSNKRTSINEVKRYIIDTFIED YNGN" ORIGIN 1 ggacccacgg atccttgcca actataaaag ccgctgttct ggccaaaacc aaagcagttc 61 gttcgtggcg ccagtccgga aaatttcaca aagcggaaat acttggaaaa ccatacttgg 121 tttaacttca aactcgaact cgcttgttga tattacggca aagctataaa aactgtaatt 181 agtttgcgct tgtgggttcg caaaatttaa tcagccagcc atgtggtgaa aagtgggaaa 241 taaataaaca aacccttcgc aagtgcataa ttacaatgct aacgaacaaa agaaacaata 301 taaacgaaat gccaataccg aatagttagt ccaacaaagt gaccacaaag caatctagtt 361 tgcgttgcca atataaatca aattgaaatc agattacaag cttaaatagt tcaatgattt 421 ggctttcgtc ggacgaacaa tggtcactag ttatttgaag tgagaaattt atgcaaaaca 481 tcgcaaaatc taaaatgtat aattacattt aacgaatcaa cgtgttttta ttaagtgaac 541 cagtattaaa taaaataaat aattataatc cgcagtgttt gtctaataaa aaaaaaagaa 601 gtgattatca attatctagg ccaacgatga atgcaggtgc tgtgtgaaag tgcctctgtt 661 cctggagagg gacggatcca agttgaatca aagccggaac gtgacttttg ccgaaagtaa 721 attgagccac cgcagcgata aaagctgcca tgccaaccgg cgagtggcgc taggacactc 781 gtaaagataa aggatccatg gctcggccga atccaggtgc acccgtgatg agaggcgatg 841 acatctattc gcgggtgcac tccgccaccc ctctgcccct gcccctacac ctggtcctcc 901 tgctcttcct gctcgtgctg cagctcctgg caccggctgc agcgactccc gtgaatccct 961 gtccccacaa gggcatggcc gaactgattc gcaacagtcc ggtaattgtc aaggccctcg 1021 tcgcacggat cttcgccgat gagccggagg gaccggtgca gtccctcgca caggacacga 1081 ttttaataac attaacgccg gaaacgatat acaagggtgc ctcgctgctg aaagtggcca 1141 acggcaatac cgatgccggg aatcccatgt cgccgagggt gggaggtctc atgtcctgga 1201 gctcgggcca tcgcagcaga ggtggcagcg ctggatccgc gggcagcggt ggcacctgga 1261 gtggcgctga gtcagccttt cagtacgagg ggcagttgaa tgcgaccctc cagccactgc 1321 gttgtttcga taataacatg ctgaaaatgc tgccggcgga gttaattgcc tttggcaaac 1381 tgctgcccgc tgcgacggca tccaccggag gcagtccgca gaccgcacga cagcttcaac 1441 gaccgcccgt gggtggcgcc accgatgtgc tgcaagtcag cgtcaacggt ctgcatcgct 1501 ggacgccgca gttcgagaat catatctgga agcatttggg ctgggacgat tggagcgact 1561 tcaccttgtg cagtgtcacc tgcggtcagg gggtgcagca gcgtttccgg cgctgtctac 1621 tcgacaatcc gctggtggac atcaacatga acatcaatct ggaggaggac gacgacgacg 1681 acgacgagga tgaacaggct cagggtgcag acgatgcggg cgcagttgcc caactgtcca 1741 aggagacgga cgttttcggc gatggcaaca acgatctgct ggcagatgag gatgagaacg 1801 agctgctcat aatgcgagca agtggcgacg agtcattgca taaatttgac caggcaacga 1861 cgacgattac gccgcagacc agtgtccgtg cccatgccca tccgagcgcc agtcccccgg 1921 cacctgaccc catgggagag acaagcggcg gtaatgaacc accaagtgat gatgaaggag 1981 caggcgttgg aggagctggc gaaagtgtca ggtttgtgcc gagtgcgcac aatgaccggt 2041 ctggaaacga agtgggagct ggagcggcga ctggctccag tgctgggacc aggaaggcac 2101 gtgccagcaa tcagcacaag aaacgcaagc ccaccaagag cgtggccctg tcgacgctcc 2161 tctgcgaggg ctacaacatc gagcagcgca actgcaacag tttcgagtgc agcgatgaca 2221 taagcgatct gctaaagttc tacaagaagc tgccgatggg tgaggatttg ccaactcaag 2281 cttcggatgc ttcgcttgcc ccttcctacc cggatgcata ttcaaatttg gacctcacca 2341 cggcgggtct gatgggcact gcattcagtc caacgccctc gacgccctac aacatgggct 2401 acattcgcag ctggaggaac ctccttaact tcacccttat ggtcacatta agggctaaga 2461 acgacaccaa gagcacggcg accatattct ccataagaaa cgccactcac aatctttatc 2521 tggaggcctg caaggacgga ctgcgtttgt atttggagcg ggacaatacg acggaaatgt 2581 tgccggtgaa attcaattta tacgattatc gctggcatca agtggccatc agcatacaga 2641 acggcgattt catatcgatt tacgtcgatt gcgcgtggac aaacagtttc gttgtctcca 2701 agcgactttt tacgttgccc gtggacgcgg atgtcgaaat cggacgcggc ttcaatggtg 2761 aactgcagca actgctcgtg ctgccggaaa atcaggaacg gctgcagtgc agcaacaagc 2821 gcacctccat caacgaggtg aagcgctata tcatcgacac attcatcgag gactacaatg 2881 gcaactgagg ccaacgccaa tcgaccgaat gccactaaat atgcatatat attatgtggc 2941 agcaagtccg ctcgaaatcc gattacaaat tcggcaaatc aaaactgcat agatttatga 3001 ttattcattt aatttgcata catctgcata catatgtatg tattaggcct agaatgtatg 3061 tatgtgcaaa ttgacatact aatattacgc atacgccatg tgatttatgc gctagcaaac 3121 agcgcactcc accacagaag ccataaccag tcagtaaaat tcgattgcgg acacattatg 3181 gatgtcatca ttcgcattcc aatcgaggga atgtgctcgg tatttgtaat aattaagcta 3241 atttgacgga atacaataat tgtaaacgca gaaattaaaa taatttgcat agcgaaagtt 3301 aaatgcaaaa atggaaagac gaagagtaag atcaaatata acgcaactat gtatatggta 3361 aaac //