Dbfetch
LOCUS NM_141197 2693 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant A (CG9795), mRNA. ACCESSION NM_141197 VERSION NM_141197.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2693) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2693) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2693) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2693) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2693) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2693) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2693) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2693) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2693) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2693) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2693) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2693) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2693) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2693) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2693) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2693) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2693) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2693) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2693) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2693) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2693) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2693) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2693) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2693) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033777). On Jan 16, 2013 this sequence version replaced NM_141197.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2693 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2693 /gene="CG9795" /locus_tag="Dmel_CG9795" /gene_synonym="Dmel\CG9795" /note="Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org" /map="82A3-82A3" /db_xref="FLYBASE:FBgn0037234" /db_xref="GeneID:40545" CDS 817..2322 /gene="CG9795" /locus_tag="Dmel_CG9795" /gene_synonym="Dmel\CG9795" /note="CG9795 gene product from transcript CG9795-RA; CG9795-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_649454.3" /db_xref="FLYBASE:FBpp0078547" /db_xref="GeneID:40545" /db_xref="FLYBASE:FBgn0037234" /translation="MFLTQQQQLPQLKQQLQQQRQQEFSKRTQPYGVGPGTPFSLGIQ RNSNSLSHRYPMLFPPQSLNSYGDGGQEFASLPPLNNMMGGPEGLGCDQEPNSTDVLD GSESNPNFTKGFRFSDPCLLNPSDNDSKLSGQNTPECRNVNNNGSGCDLAHQNKFFAA LMEQINILHDTNSKICRNLHNTKVDIEALKHSPNSQHWAGVGFGGMRHRRDSLSGLST QSQPLILGSGLGGTHSPAPTFHSGAYTPGMMTDVVREVKEAARIREDALLSRVKLMVE ERQCSLNEGNVRILRDIDDLKTQVMQLRLEKKETNKRLSHLESENKCLRQALAGCYNQ RPISNDIIYENDRSHGFRKPFPNGGGGGVVGSGALGIRRAKSLNLHYGTMHQTPIQTT HSLEEDDEIEEEQLVEQVGLDGEELSLTGNNSLSCLNIGHQSPSNLTPHSQIPKSEKQ AVRSPPSFALASDQINPGIPPPLLPRKKDHAHLKRERSEAASVPLRNWLKT" ORIGIN 1 tgcccacctc taaaataaat gcctaatgaa ttggctcagt tccgttgtgc gcttaatttt 61 ttgtcgctgc tcaaactgaa tgtttccgcc tgtcagaaca ccgtatgcaa aaccgtgacc 121 gcgcccacgc cgtgcttgaa agtccaatac atttaatccg caattgtgac gcaagtaaat 181 tttggatggc caatgccact gggcaagtaa gcaacatgag cgttttgcgg gaggaaacga 241 caacttccag ccagagggag ataagcacaa acggcggtgg gttggatttc cccgcagaag 301 tgacgtcgct gattgctggc aacagctttt gcttaacgcc aggaaataac ggcgggatcg 361 gtgcccagaa aaaggtcact actggagcgg gtctgaacag tacacagaga gccactataa 421 ttacgaaaag atttaatcta ttcaaactga ctgatttcac ggtcagtaat cgacttaatt 481 ttatttgtta cgatgccttt gtccgagata tatcattgaa ataacggaaa ctatttacct 541 aactcccgaa ttatataagc tacggatgcc accaagcgca agaaactaag gtcgcgtaac 601 gtaccacctt ccccattggc ccaaaaaact gaagcagcgg cgacctctct taaccaaacg 661 aacatcggtg aggtcaagag aaccgatatt aactattcca acgatcacct tgatgcctgg 721 ttggagagct gtttacgtga tgccaccaac gcccaattgt cttcttcatc tgagtttttg 781 gacttcatac cgcccacagc accagctcat aagcaaatgt ttttgactca acagcagcag 841 ctgccgcagc ttaaacagca actacagcag cagaggcaac aggaattttc gaagcgaacc 901 cagccttacg gagtgggtcc aggcacaccg tttagcctgg ggatacagcg caattcgaac 961 tctcttagcc atcgatatcc gatgctcttc ccaccccaga gccttaacag ctatggtgat 1021 ggtggccagg agtttgcaag cttgcctccc ctgaacaaca tgatgggagg gccggaaggg 1081 cttgggtgcg atcaggaacc gaattcgacg gatgtgctgg atggcagcga aagcaatccc 1141 aactttacca agggatttcg gttcagcgat ccgtgcctac tgaacccctc cgataatgac 1201 tctaagctga gtggccagaa tacaccagag tgtcgaaatg tgaacaacaa tggcagtggc 1261 tgtgatctgg cacatcaaaa caaatttttc gcggctctaa tggaacaaat aaacatattg 1321 cacgacacca attccaagat ctgccggaat ttgcataata caaaagttga tatcgaagct 1381 ttaaagcact cccctaatag ccagcactgg gcaggtgtag gctttggggg catgcggcac 1441 cgtagagata gcttaagcgg gctaagcaca caaagtcaac ctcttattct tggcagtgga 1501 ttgggaggga cacacagccc agcgcccaca tttcactcag gcgcctacac tccaggaatg 1561 atgacggatg tcgtgcggga agtgaaggag gcagcgcgca tacgcgaaga tgcactgcta 1621 agtcgagtaa aattaatggt tgaagaacgt cagtgttcct taaacgaggg aaatgtccga 1681 attctgagag atatagacga tctaaagacc caagtaatgc agttgcgact ggagaaaaag 1741 gagactaaca aacgcctctc acatctggaa tccgaaaaca agtgccttcg tcaagctctg 1801 gccggttgtt ataaccagcg gccaatcagt aacgacatta tttacgaaaa tgaccgatcc 1861 catggattcc gaaagccatt tccgaatggg ggtggcggcg gagttgtggg ttccggtgcc 1921 ctcggaatac gacgggcaaa atctttaaac cttcattatg gaacaatgca tcaaacgcct 1981 atccaaacga cacactcttt ggaagaggac gacgaaatag aagaggagca gttagtagag 2041 caagtaggac tggacggaga agaattatcc ctgactggca acaacagttt atcgtgtttg 2101 aacatcggtc atcaatctcc ctccaactta acgcctcact cacagatacc taaatcagaa 2161 aagcaagcag ttagaagccc tccctctttt gcgctggctt ctgaccagat caatccggga 2221 attccaccgc cattgctacc acgaaagaag gaccacgctc atctaaagcg ggagcgcagc 2281 gaggcggcct ccgtaccctt gagaaattgg ttgaagacct aagtgaccag gtgagaggta 2341 agacaaagag gaacccgacc gtatcaagca ctgcagcgga cataacgcta tcatcgaaat 2401 tcagcgtggc ggacgctccg attacggact tatagtttta gctataagcc gcctcaaaag 2461 caaaagggtt gcgccaacac aaaatgcgtg tcactcactt atagcatttg gatacacgac 2521 aattatcaca tcaacgacac ttcatcttat gtttcaaaat ttattataac ccaataacct 2581 gtgcgtaagc tcaaatgtat taactagaat gcttttacca agtgtcaact gtaatttaaa 2641 attttgaaac tcattgtttt ttgtctacta aaaataaatg tcactaaatt ttt //