Dbfetch
LOCUS NM_140582 3410 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster Zinc-finger protein at 72D (Zn72D), transcript variant A, mRNA. ACCESSION NM_140582 VERSION NM_140582.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3410) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3410) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3410) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3410) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3410) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3410) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3410) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3410) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3410) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3410) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3410) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3410) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3410) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3410) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3410) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3410) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3410) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3410) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_140582.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3410 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3410 /gene="Zn72D" /locus_tag="Dmel_CG5215" /gene_synonym="CG5215; Dmel\CG5215; l(3)72Dk; zn72D; ZN72D" /note="Zinc-finger protein at 72D" /map="72D6-72D7" /db_xref="FLYBASE:FBgn0263603" /db_xref="GeneID:39764" CDS 193..2100 /gene="Zn72D" /locus_tag="Dmel_CG5215" /gene_synonym="CG5215; Dmel\CG5215; l(3)72Dk; zn72D; ZN72D" /note="CG5215 gene product from transcript CG5215-RA; CG5215-PA; Zn72D-PA; lethal (3) 72Dk" /codon_start=1 /product="Zinc-finger protein at 72D, isoform A" /protein_id="NP_648839.1" /db_xref="FLYBASE:FBpp0075248" /db_xref="GeneID:39764" /db_xref="FLYBASE:FBgn0263603" /translation="MANNNYAGFNYGGTQYNTGQVSYPAVTNATYANAAAYQNAAVAA GQGGYGGAAGAGAGATSGPGAGGYGGYGDYRSAMQYDATKTFYQQSPASYNASGSTAS VSKTHYSAPPVKNQVKGKMDKSNGGPKPPSSAPPAGNNYSGYDTALYNAASMYVAQQH QGNPNQKPNGGANNWYQRKMGATIPGATAIRGMRPKAPPRPQQLHYCEVCKISCAGPQ TYREHLEGQKHKKREASLKMSASANSATQNRGNNYHCELCDVTCTGTDAYAAHVRGAK HQKVVKLHQKLGKPIPSEEPKKMGKINFVPAAAGGAGVAKTEGGANESDAAGDLDDNL DDSLGENTDNIKPVGGEYIEEVKDEEGKILSFNCKLCDCKFNDPNAKEMHMKGRRHRL QYKRKVQPDLVVDFKPTPRQRRLAEARANRAMMSSHRGGDDHDGGYWEEQRNRQYNEE YDYNNWMSRSFGGAQRFGRMGNGPPPHFGMMPGGNVRRPESTDDRHAIARHAEIYPKE EELQTIQRIVSHTERALKLVSDALAEQPSDAGAANKKDKAEKPSEKDGRDNQIFSFQK DADNGGNVVRILKGVMRVGYLAKGLLLHGDNAVELVVLCAEKPTSGLLQRVANVLPDK LKEVAASLSAG" ORIGIN 1 atgattatcc gattacgctg cggtcacact agtaccggcc catagagacg gaagaaaaat 61 tttatttaac cgatttcagc tataaacagg ctattactcg gaaagcacat ataaattccc 121 gaataaatcc gcattcgaag tcccataaat attgacagtc agtcggatag gacagctaat 181 cgcaccgcga caatggccaa caacaactac gccgggttta actacggcgg cacccagtac 241 aatacgggcc aagtctcgta cccggcggta accaatgcca cctacgcgaa tgcggccgcc 301 tatcagaatg ccgctgtggc cgccggacag ggtggttatg gcggagcagc aggagcgggc 361 gctggcgcca cctctggccc tggggcgggg ggttatggtg gctacggcga ctatcgaagt 421 gccatgcaat acgacgccac caagacattc tatcagcagt cgccggccag ctacaacgcc 481 tccggttcga cagcctcggt cagcaagacg cactactcgg ctccgccagt caagaatcag 541 gtcaagggca agatggacaa gtcgaacggt ggtcccaagc cccctagttc ggctcctccg 601 gcgggcaaca attacagtgg ctatgataca gcactctaca atgcggcaag catgtatgtg 661 gcccaacagc atcagggcaa tccaaaccaa aaaccaaatg gcggcgccaa taactggtat 721 cagcgtaaga tgggagccac cataccagga gcaacggcca taaggggtat gcgtccgaag 781 gcacctccac gtccccagca gctgcactac tgcgaagtgt gcaaaatctc gtgcgccggg 841 ccgcagactt atcgcgagca tctggagggt cagaagcata agaaacgcga ggcttcgctg 901 aagatgtccg ctagtgccaa cagtgctaca caaaatcgtg gtaacaacta ccactgcgag 961 ctgtgcgatg taacatgcac tggtacggac gcatatgccg cccatgtacg cggagccaag 1021 catcagaagg tggtcaagtt gcaccagaaa ctgggcaaac ccattccctc ggaggagccc 1081 aaaaagatgg gcaagatcaa ctttgtgccc gctgctgctg gcggagctgg tgttgccaag 1141 accgaaggtg gcgcgaacga gagcgatgca gctggagatc tcgatgataa tctggacgat 1201 tcgctgggcg aaaacacgga caacattaag ccagtaggcg gcgagtatat tgaagaggtc 1261 aaggacgaag agggcaagat tttgagcttt aattgcaagc tgtgcgattg taagttcaac 1321 gacccgaatg ccaaagagat gcatatgaag ggccgtcgcc atcgcttgca gtacaagcga 1381 aaggtgcagc cagatctagt tgtcgacttc aagcccactc ctcgccagcg ccgcctggct 1441 gaggcccgtg ccaaccgggc catgatgtcc tcgcatcgcg gcggtgatga tcacgacggc 1501 ggctactggg aggagcagcg caaccgacaa tacaacgaag agtatgacta caacaactgg 1561 atgtcgcgca gtttcggagg tgcccagcgc tttgggcgca tgggcaatgg accgccgccg 1621 cactttggca tgatgcccgg cggaaatgtt cgtcgtccgg aaagcaccga tgatcgccac 1681 gccattgccc gtcacgccga gatctatccg aaggaggagg agctgcagac catccagcgc 1741 atcgtctcgc acaccgagag ggccctaaaa ttggtctccg atgccctggc cgagcagccc 1801 agcgatgccg gagcggccaa taagaaggac aaggctgaaa agccgtcgga gaaagacgga 1861 cgcgacaatc agatcttctc gttccaaaaa gacgccgaca atggtggcaa tgtcgtgcgc 1921 atcctgaagg gagtgatgcg agtgggctac ctggccaagg ggctgctgct ccacggcgac 1981 aacgccgtcg agctggtcgt cctttgcgcg gagaagccga cttcgggtct tttgcagcgt 2041 gtggccaatg tgctgcccga caaactcaag gaggtggcag cttctctctc tgcaggataa 2101 gtttcgagcc tcgagccttg agccttagcc tagaagctct gtgagcctag agtcttgagt 2161 gtgtcgttca gttagccatc tgtagcggta gctcagccct cccaggttgc tcctcttccc 2221 gcacgactgc cgctgcactg ctccgctcca ctccaatcaa atcaccaaca gcggatcgtc 2281 acggcgacac tcaggtcaat taccgcgtgg aggtcaacgc cgaggaagcc gccctaattg 2341 tgctggatga gtctgtctcc gttaagatta ccctcacctc gcctttgctg cgcgatgcca 2401 atcccgggga agctgccacc actgatgaag gtgagggcga ttccgaattc ctgcctcgtg 2461 agccctgcct acgtgctttg gctgatttgc gtcacgccaa atggttccag gctcgagcga 2521 caggcctcca gtcgtgcgtc atggtcatac gcatcctcag ggatctgtgc cagcgcgtct 2581 cttcctggca atcgctgccc caatggtctt tggagctcct cgtagagaag gtcatctcgt 2641 cggctggctt tcccatttcg cccggtgact gcatgcgtcg catcatggag gccttatcgt 2701 caggctttct aatcaacgga ccgggcctgc tggatccttg cgagaaggac cccacagacg 2761 ctctactcga gttgaccaaa caggagcgcg aggatctcac tgtgtccgca cagctcttcc 2821 tgcgctacat tgcctttcga cagatttaca aagtgcttgg catggagcca ttgccggcga 2881 tgaagtttcc aatgcgtcca tggcgtgtca accgcaagcg acgtaggtca tcgggcaagg 2941 caggtggtgc acccggcacg gagaccgagt ccaatgacat cgatgagacc ggctccgatg 3001 agaaggtggc caagaaggag ggtgtcggag gcactcctgc cagcacctaa gcggcgagaa 3061 taggttatat acacgtagtc ggctactaat attacaattt ctctcaagat aaaagcgcga 3121 ccaggcgtca cttaactata accaactcta atctatacac gagtattcaa accgattggg 3181 gcacaaggag ctaagcatgt ccaacatgtt gcccaatcgg cgattagtga atcccaaatt 3241 accccaactt taactaacaa tatttagtgg atcataaaac ttgtattttt ctagcattag 3301 tgcaaggcaa ggcaatgtat tcagtttgaa tgtgaacatt atggccctca cactcatata 3361 cacaaatact agaacgaagc ggattttaat aaaacgtatt gaacaattat //