Dbfetch
LOCUS NM_138223 2830 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG12502), mRNA. ACCESSION NM_138223 VERSION NM_138223.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2830) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2830) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2830) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2830) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2830) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2830) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2830) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2830) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2830) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2830) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2830) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2830) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2830) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2830) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2830) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2830) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2830) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2830) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Dec 17, 2009 this sequence version replaced NM_138223.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2830 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="3L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2830 /gene="CG12502" /locus_tag="Dmel_CG12502" /gene_synonym="Dmel\CG12502" /map="61D2-61D2" /db_xref="FLYBASE:FBgn0035171" /db_xref="GeneID:38102" CDS 315..2531 /gene="CG12502" /locus_tag="Dmel_CG12502" /gene_synonym="Dmel\CG12502" /note="CG12502 gene product from transcript CG12502-RB; CG12502-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_612067.2" /db_xref="FLYBASE:FBpp0289574" /db_xref="GeneID:38102" /db_xref="FLYBASE:FBgn0035171" /translation="MPSRRGGGGTTKRKHSLGNLRRAHPASGATWNVQVVRGKMSSKC LWHACRALILGLTLMLLGAGMATLGYYADHLSMGSELRGNVTVRVKNDLKGFHLNNFA YVGPIVMGFGGFIVVASCVMTFEARDSAAKVVPARLRAGGGGSSKNPSRSNQGSSASQ RRGMGAQYQSSRWDQHFGVFRSSPGDPHQQPQTACISTTHPHQHSHPQQPFDREALTA ELVQFSRSLSASNRFCPQWRRLSGAGSAPDLSGSHAHANTTNSTNATNHQNPTTTVTT NYYNLLSLNRLSPLDWELYCSHRRHRRHHHRHSHHHHHHHHKSSSSSVRRVRPVRPGL GAGSQPSGGGGGGGGGGAGSSSSARIISNSSSLIQRATRECSLLQPPAASRVYWQASS FDGGSNHPPGLGMSSGAEKRSERNKRSDTAKRHVLSRQRPIEQEEARDHSRSPLGHRR NSTMSDSSYSGRWTARCASMASRTSSIESRRVQVDLHSPEVMPKSILRSPKRYSSGPS ATPSVEKEFRSQLSVCSEPPPPVRQLSGQSSMEPAVPEESLDQSEEQEETTQPKASYE EITELQHHTSSLPPKKARPGFLPLARSEQEEDPRPVANPLYRSNSSRQFYRPKKGVPN ERDDSVFYIRSMERGLAENGGCGSADEQRYDSLRVINERRTTLLKADSQGSLGSAERK LSSFSLKMPEITERENSIEIEIDADELHPSTPPSPPPPPTQPGNSHTTESIQDQDP" ORIGIN 1 gcagtacgca aatcgccgga atccagtgac tggtgcttcg ggagccacaa tgctggcagc 61 caagttcaaa gggcagccaa gacgatgaca agtggccttt gtacactcaa agtcgcgaaa 121 atatatgcac ggccagcacg caggatacat acagacggag cgaaggcaaa tctgctttta 181 ggtcacacaa aaggctctcg cagcagcagg acgagcatca ataggagcga ggaccaagga 241 gttccaagaa cgagccaaca acacccaaat tgatgacagc cgattcgagc caagggaatt 301 gatcagcagt cgcgatgccc tctcgtcgcg gtggtggtgg caccaccaag agaaagcact 361 cgctgggtaa cctgcgacgg gctcatcccg cctccggagc cacatggaac gtccaggtgg 421 tgcggggcaa gatgtcctcg aagtgcctgt ggcacgcctg tcgagccctg atcctgggtc 481 tcactctgat gctcctcggc gccggcatgg ccactttggg ctactacgcg gatcaccttt 541 cgatgggttc cgaattgcgt gggaatgtca cggtgcgggt gaagaacgac ctcaagggct 601 tccatctgaa caacttcgcg tatgtgggcc ccattgtcat gggtttcgga ggcttcattg 661 tggtggcctc ctgcgtgatg accttcgagg cacgggactc cgccgctaag gtcgttccag 721 cacggttgag agctggagga ggcggcagca gcaagaatcc ctcgcggagc aaccaaggaa 781 gctccgcgtc acagcgtcgc gggatgggtg cccagtacca gtcgagtcgt tgggatcagc 841 acttcggtgt gttccgctcc tcgccgggcg atcctcacca gcagccgcag accgcctgca 901 tctccaccac acatccgcat cagcattcgc atccgcagca gccattcgat cgcgaggcac 961 tcaccgccga actggtccag ttctccaggt cactcagtgc atccaatcgc ttttgtcccc 1021 agtggcgccg cctttcgggg gctggttccg ctccggattt gtccggatcc catgctcatg 1081 ctaataccac caactccacc aatgccacaa accaccaaaa cccaaccacc acagtcacca 1141 ctaattacta caatttgctc tcactgaatc gattgtcgcc gttggattgg gaactgtatt 1201 gctcgcaccg ccgtcaccgt cgtcaccatc accgccactc gcaccaccac caccaccacc 1261 accacaaatc ctcaagcagc agtgtgcggc gggtgcgccc agtgcgaccg ggcttgggag 1321 cgggatcgca accctccggt ggaggcggag gaggaggtgg aggaggagct ggctcctctt 1381 cgtcggcccg gatcatcagc aattcctcca gcctgatcca gagggccacc agggagtgct 1441 ccctgctcca gccaccagct gctagtcgtg tctactggca ggcctcctcc tttgacggcg 1501 gcagtaatca tccgcccgga ttgggcatga gttccggcgc agagaagcgc agtgagcgga 1561 acaagcggtc ggacaccgcc aagcggcacg ttctctcccg gcaacgaccc atcgagcagg 1621 aggaggcacg ggatcacagt cgcagtccgc tgggacacag gcggaactct acaatgtcgg 1681 actcctcgta tagcggccgc tggacggctc gctgtgcctc catggccagt cgaacatcca 1741 gtatcgagtc tcggcgtgtt caagtagatc ttcatagtcc cgaagtgatg cccaaatcca 1801 ttctccgttc gcccaagcgc tacagctcgg gtccatcggc cacgccttcc gtggagaagg 1861 agtttcggag tcagttatct gtatgctcgg agccaccgcc accggtgcgc cagctgtcgg 1921 gccaatccag catggagcca gccgttcccg aggagagtct ggatcagtcg gaggagcagg 1981 aggagacgac acagcccaag gcgtcctacg aggagatcac cgaactgcag caccacacga 2041 gcagcttgcc gccgaaaaag gctcgtccgg gattcctgcc cctcgcgcgc agcgagcagg 2101 aggaggatcc gaggccagtg gccaatccgc tatacaggag caatagttcc cgccagttct 2161 acaggcccaa gaaaggtgtt ccaaacgagc gggatgattc cgttttctac atacggtcca 2221 tggaaagggg attggctgaa aacggtgggt gtggcagtgc ggatgagcag aggtacgatt 2281 cactgagggt catcaacgag aggaggacca ctttgctgaa agccgactcc cagggctcct 2341 tgggatctgc ggagcgaaag ttgagcagct tctccctcaa aatgccggag atcacggagc 2401 gggagaactc gattgagatc gaaatagatg cggatgagtt gcatccaagt accccgcctt 2461 ctccaccccc gcctccgaca cagccgggca attcccacac aactgaatca atccaggatc 2521 aggatcccta ggatcgaatg gatacaccca cttcttagcg tttaaccagc agccatcgac 2581 aattacttta gcaactcgat tgatgtttgt atatgtattt ttgtgcgtgt gcgtgtcgtt 2641 tatttttata acccctagat cgtatctaga taagtgttaa acgagtatat atatatatat 2701 atatatatat ataccagcaa ttatctctgt gttgcctcgg gcctaagcaa tcaactaacg 2761 aactaacttc aacgacgtct attaacttga taaactgatg ttattaaaaa tataacttca 2821 gttgcgatcg //