Dbfetch
LOCUS NM_136912 2973 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster salto, transcript variant A (salto), mRNA. ACCESSION NM_136912 VERSION NM_136912.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2973) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2973) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2973) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2973) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2973) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2973) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2973) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2973) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2973) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2973) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2973) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2973) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2973) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2973) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2973) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2973) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2973) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2973) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2973) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2973) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2973) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2973) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2973) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 2973) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jul 15, 2014 this sequence version replaced NM_136912.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2973 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2973 /gene="salto" /locus_tag="Dmel_CG13164" /gene_synonym="CG13164; Dmel\CG13164; sal; Sip2; SIP2" /map="48F6-48F6" /db_xref="FLYBASE:FBgn0061197" /db_xref="GeneID:36332" CDS 172..2670 /gene="salto" /locus_tag="Dmel_CG13164" /gene_synonym="CG13164; Dmel\CG13164; sal; Sip2; SIP2" /note="CG13164 gene product from transcript CG13164-RA; CG13164-PA; salto-PA; syntaxin Interact. Prot. 2; syntaxin interacting protein 2" /codon_start=1 /product="salto, isoform A" /protein_id="NP_610756.2" /db_xref="FLYBASE:FBpp0088611" /db_xref="GeneID:36332" /db_xref="FLYBASE:FBgn0061197" /translation="MNSSSVTPRSVRSNKAFLLRTAGKAEKQASDKATWSRTSSCGGV FSTPPTQNGDGSPNKGRLSHIPNRRGASRSSIHSRKTSLERVTSSTKARPCVSTYSLP NRRVEPEHKVVEPDRKTDIDELNPPKRNVVPIKTHAQSAQLVKSTTCEPYQNVKKPEK MSHRRVLEMNRMRVFDTQKKKLENLQSEFMHKIRLMGSELRNQGVFKFVGLTVNDECK LVVHHDDLLRLPKSIPAESMNDLKTRCRAIVDQGVLLIYDHIPRIQRAKNDLEASEKR EETQKKLSNLVEEKMNLIVEEIEQLCGACSKQESPNKSLYREMSELRSQKQAMEVRYF DAQKEHTEQMNQLRIELDAKLKQELASRDQIIVELRKSLRRSEDMLSEQSIRLAENNS KLLTEDSTIEVLRSEVAKLKTVKEQMVKRLEEADKGLERARNSVDKNLKHIDYLEGEL KEARELIVHLEQRPDAMDAGVKEKDLIIADLKLQLQSLEQHKKVMNKQVANTIKQHAD FEELGGNYKEALQQISDLRETLSVTNAKLEMQSKLEVQLRKEVSKMREQMVIDQKLLN ARSELIATLQKNEEDSRTKLDQMYYQVSEKETLINQVNNKLSSKEEEFYNLYGTLTHK QREVRRQEHIIKLLKEQNSRVSLLRANQDERNATMEEEIKHLKNALRNYAKLIVGNMG EHFFEVLPAGEMESIRSGGHPVRVDSSCKFLQEPNLQEPNLQEPNLQEPNLQDDTLQE PNLQEPNLQEPNLQEPNLQDAILQEPNLQEPNLQDATLQEPNLQDATLQELNLQDATL QEPNLQEQEMSQPRGRIFEPLQHQLLDGLIRPAI" ORIGIN 1 gttacttcca cgaaccacct cgtttggatt ggtcagaaag catttttgta ccatttacac 61 tagacgtagt tcaactggaa atatttagaa acaaattttc tatactattt tttcctcatt 121 ttgaacacaa aaatcgttta caaaaaagcg ttgatttccg aaactttaga tatgaattct 181 tccagcgtga cgccgcgttc agttcgtagt aacaaagcat tcttgctgag gacagctgga 241 aaggcggaaa agcaagcctc agacaaagct acatggtctc gcacttcttc ttgtggtggc 301 gtcttctcta ctcctcccac ccagaatggc gacggaagcc caaacaaagg taggctcagt 361 cacattccaa ataggcgtgg agcgagtcgg tcgtctatcc attcgcgaaa aacttctctg 421 gaacgggtta cttcttcgac gaaagcgcgc ccgtgtgtca gtacgtattc gttgcccaat 481 cgacgggtcg agcccgagca taaagtagtt gagcccgatc ggaaaactga tatcgatgag 541 ttgaatcccc ccaagcggaa cgtggttccc ataaagacgc atgcccagtc agcacaattg 601 gttaagtcaa cgacatgcga accttatcaa aatgtaaaga agcctgaaaa gatgtcgcat 661 cgccgtgtcc tggagatgaa ccggatgcgg gtctttgata cgcagaaaaa aaaactggag 721 aacctgcagt ccgagtttat gcacaagatc cggttaatgg gttcggagct ccggaatcaa 781 ggggtcttca agtttgtggg tctgactgta aacgatgaat gcaagcttgt ggtccaccat 841 gatgatctac ttcgattgcc caagagtatt cccgccgaaa gtatgaatga cttgaaaacc 901 aggtgtcgtg cgattgtaga tcagggggtt ttgttaatct acgaccatat accaagaatt 961 cagagggcta aaaatgatct cgaggctagt gaaaagcgtg aggaaactca aaaaaagttg 1021 tctaacctag tggaagaaaa aatgaattta atcgtcgagg agatcgaaca gttgtgcggt 1081 gcatgctcca aacaagagtc acccaacaaa agtctctatc gcgagatgtc cgagttgcgt 1141 tcccagaaac aggccatgga ggttcgttat tttgacgccc agaaggagca cactgaacag 1201 atgaaccagt tgcggatcga gctcgatgcc aagctgaaac aggagctggc cagtcgagat 1261 cagatcattg tagagctgag aaagagcctg cggcgaagcg aggatatgct cagtgagcag 1321 tccattcgat tggccgagaa caattccaag ctattgaccg aggattccac catcgaggta 1381 ctgcgctccg aggtagccaa gctcaagact gtaaaagagc aaatggttaa gcgtctggaa 1441 gaggcggaca aaggtctgga gcgggctcga aattccgtcg ataagaactt gaaacacatc 1501 gattacctgg agggcgaact gaaggaggcc cgtgagctca ttgtccatct ggaacagcgt 1561 ccagatgcca tggacgcggg agttaaagaa aaggatttga tcattgccga tttgaaactg 1621 cagctgcaaa gtctcgagca gcataagaag gtcatgaaca aacaggtggc caatacaata 1681 aagcagcatg ccgactttga agagctgggt ggaaactata aggaagctct acagcagata 1741 agcgatctaa gggagaccct aagtgttacc aatgccaaat tggagatgca atccaagctc 1801 gaagtgcagc tgcgcaagga agtgtccaag atgcgcgagc aaatggttat cgatcagaag 1861 ttgctgaacg ctcgcagcga attgatcgca acactgcaga agaatgagga ggatagccgc 1921 accaaactag accaaatgta ctatcaagtt agcgagaaag aaacgcttat caatcaggta 1981 aacaacaagc tgagttcgaa ggaggaggag ttctataatc tctacgggac cctcacgcac 2041 aaacaaaggg aagtgaggag gcaggagcat atcatcaagt tgttaaagga gcagaattcg 2101 cgggtatcat tgttgcgagc caatcaggac gagcggaatg ccacgatgga ggaggaaatc 2161 aaacatctca aaaacgccct ccgtaattat gccaaactaa tagttggcaa tatgggtgaa 2221 catttttttg aagttctgcc ggctggcgaa atggagagca ttagaagcgg tggccaccct 2281 gtgcgtgtgg actcttcctg caagtttctg caagagccca atctgcaaga gcccaatctg 2341 caggaaccca atctgcagga gcccaatctg caagacgaca ctctgcagga acccaatctg 2401 caagaaccca atctgcaaga gcccaatctg caggaaccca atctgcaaga cgccattctg 2461 caggagccca atctgcagga acctaatctg caagacgcca ctctgcagga gcccaatctg 2521 caagacgcca ctctgcagga gctcaatctg caagacgcca ctctgcagga gcccaatctg 2581 caagagcagg agatgtccca accacgtggt cgcatctttg agccactgca gcatcaactg 2641 ctcgacggct taattcgccc cgccatttag tgcgcttgcg ctatcaacta caacatccaa 2701 atattcgtcc tacagatcct gcgcgtccac aaaaagtcgc aaattccctg ccaccctcct 2761 ctgcgattgc gaagacacca gcgatcccaa gaccagcgtt aaacatccaa tttgaactac 2821 aagaacccaa cccaaatatc aacccaaccc aacacatccc aaaggagaac gcttagcatg 2881 gaaattctta agatgaacaa accaaatttg ttgtaaccgt tggccaaatg gcattgtttt 2941 ttgtacccat acatatgtaa aaagtaatgg cag //