Dbfetch
LOCUS NM_135847 2873 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster nimrod A, transcript variant E (NimA), mRNA. ACCESSION NM_135847 VERSION NM_135847.6 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2873) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2873) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2873) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2873) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2873) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2873) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2873) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2873) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2873) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2873) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2873) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2873) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2873) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 2873) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 2873) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 2873) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 2873) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 2873) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On May 8, 2012 this sequence version replaced NM_135847.5. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2873 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2873 /gene="NimA" /locus_tag="Dmel_CG42282" /old_locus_tag="Dmel_CG31765" /old_locus_tag="Dmel_CG31841" /gene_synonym="BG:DS00180.5; CG31765; CG31841; CG42282; CG8855; CT25428; Dmel\CG42282; DS00180.5; j; nimA" /note="Nimrod A" /map="34E5-34E5" /db_xref="FLYBASE:FBgn0261514" /db_xref="GeneID:318930" CDS 312..2009 /gene="NimA" /locus_tag="Dmel_CG42282" /old_locus_tag="Dmel_CG31765" /old_locus_tag="Dmel_CG31841" /gene_synonym="BG:DS00180.5; CG31765; CG31841; CG42282; CG8855; CT25428; Dmel\CG42282; DS00180.5; j; nimA" /note="CG42282 gene product from transcript CG42282-RE; CG42282-PE; NimA-PE; jaunty; nimrod A" /codon_start=1 /product="nimrod A, isoform E" /protein_id="NP_609691.6" /db_xref="FLYBASE:FBpp0293263" /db_xref="GeneID:318930" /db_xref="FLYBASE:FBgn0261514" /translation="MIREKLFGKLLLLLAMVLPLGSGQNSTLKINTNVKDIEAGVVAL PSIQGPGNICIREEPYVEHVQVPEMQPVRVRTSSWCMEIPPRCATFKTEMREVMRVQK LNKTRTVRFCCQGYEGNLSDSQATCKPICRGGCGRGSCVMPDICSCEEGYIGKHCTQR CDHDRWGLDCKNLCQCQNGAACDNKSGLCHCIAGWTGQFCELPCPQGTYGIMCRKACD CDEKPCNPQTGACIQQDQPLQLNVSHVIVETVNSTLEKMGIIPRPTTPVPLPEVIVIK QPTSNENAQHSPKIIVHQSSSDLLENLHTAAAAGVPTPEVIHVITNGITSPQEHLAGF VGGEANSSQTATADHQSGLVVTLVSIMLLLLVAIAVGSLYVYRRYHHKNAAVYNANGT VTTLPANPEVVLTEAAVLGKNFHEPLPEPPVAFAVTPQSNEAQPELYDSPSNNSSIKT PPYAYARKESLYSVVSPKSRKGSLDSHLYDEIRYHQQHHHQQHHPRSHQHVQHSTTAS QFLPARPQIMPANDQFSNGSVHPHQRSHHVTHLIIPPQNSNFLQVPAQITAKRVAHL" ORIGIN 1 cgatccagac gtacacgcag cgcacatcaa acggtttaaa ttgatggatg taagcggata 61 agatcctcgt ttggaccaga actagatcag aatattaaat attgtaggaa tgtgttatgc 121 gaattaatag ttcaaggtcc taaaaataat aaacggagat gggcaaaagt gattaaggtt 181 ttcggggtat caaaagaatt ttcatcaatt aaaaaaaatt tgcgatcagt aatcattgat 241 ggatatggta aacgaggaat aaagtgaatg cctttcagct gtaaaaagaa gtgaaatata 301 aaacaacaaa tatgataaga gaaaagctat tcggaaaact gctcctcctg cttgcaatgg 361 ttttaccatt gggatcagga caaaacagca ccctcaagat caacacaaac gtgaaagata 421 ttgaagctgg ggttgtggct ctgccctcca tccagggacc cgggaacatc tgcatacgcg 481 aggagccata tgtggagcac gtccaggtgc cagagatgca gccggtgcgt gtgcggacct 541 ccagttggtg catggagatc ccgccgagat gcgccacctt caagacggaa atgcgcgagg 601 tgatgagggt ccagaaattg aacaaaacgc gaacagttcg cttctgctgt caaggatacg 661 agggaaattt gtcggatagt caagccacat gcaagcccat ttgcaggggc ggctgtgggc 721 gtggcagttg cgtaatgcct gacatttgca gctgcgaaga gggctatatt ggcaaacatt 781 gcacacagcg ctgtgatcac gatcgctggg gactggactg caagaatcta tgccaatgtc 841 aaaatggagc agcctgcgac aataaatcgg gactttgtca ctgcattgcc ggttggacag 901 gacaattttg cgagctgccc tgtccacagg gaacttacgg catcatgtgc cgcaaggctt 961 gcgactgcga tgagaagcct tgcaatccac aaacgggtgc ttgcatccag caggatcaac 1021 ctctccaact gaatgtgagc cacgtcatcg tggagactgt gaactccacg ctggagaaaa 1081 tgggtattat accgcgtccc accacgcccg ttcccctgcc ggaggtcata gtaattaagc 1141 aaccgaccag caatgaaaat gcccaacact caccaaagat cattgtccac caatcgagca 1201 gtgacctact cgagaatctc catacggctg cagccgccgg tgttcccact ccggaggtca 1261 tacacgtcat caccaatggg atcacctcgc cacaggagca tttggccgga ttcgttggag 1321 gtgaggccaa ttcaagtcag acggcgacag ctgatcatca gtccggcttg gtggtcacac 1381 tggtcagcat aatgctcctc ctgctggtcg ccattgcggt gggttcactg tatgtgtacc 1441 ggaggtatca ccacaaaaat gccgcagtat acaatgccaa cggaacggtg accacgctgc 1501 ctgcaaatcc ggaagtggtt ctcaccgaag ccgcggtcct gggaaaaaac ttccacgaac 1561 cactgcctga accgcccgtg gcctttgcgg tcacgcccca atcaaacgag gcacaaccag 1621 agctatatga tagtcccagc aacaactcct caattaaaac cccaccttac gcctatgcca 1681 ggaaggagtc actctactcg gtggtttcgc ccaagtctcg aaagggaagc ctggactcgc 1741 atctgtacga cgagattcgc taccaccaac agcaccacca tcagcagcac cacccacgga 1801 gccatcagca tgttcagcac tccacaaccg cctctcagtt tttgccggcg aggccacaga 1861 tcatgcccgc gaacgaccag ttctccaatg gaagtgttca tccgcatcag cggtcgcatc 1921 atgtcaccca cttgataatt ccgccacaga actcaaactt cttgcaggtt cctgcccaaa 1981 tcacagccaa aagagttgcc cacctgtaaa ctttattgct gacacaaagg atttttctga 2041 acatatgaaa attcgttaga cctttggtaa cttttacata ttgtacaaat ctatttcaat 2101 ttaaacttga aatgtgccct tctaacatat accaggtaat tttatatcat atttatccaa 2161 taatttgtcc caaaactcac atttaaagtc tgcgagtttt tacaaccaca cttattttta 2221 taacatactt tagatcagta ataaatttat gtacagaagc caaatgttaa gtgagcatac 2281 attttgatta catcattatt ttaagctgcc cacgaattat tataacatta tattatggaa 2341 gatatgatat gaactgggaa aaataacatt aattaaacat aaaaaaaaaa attaattcat 2401 aaatcatata agaattggat tggcgattat caaactaata gagtttcacc taatttctat 2461 tactttttaa aggtgatttg catggttaaa ggtttctgca ttatttaagg gtagtctttg 2521 attagattta acacttttat atccataaaa acctatgtgt tagactttaa gtttctttaa 2581 agtctacgat tgtggcgtgt gtagtttccg catagttgta acgttttaaa tttttaaaag 2641 tatgtttgct gtagcaacag ttttaaaaat aaaaaatgtt atgacttcaa aaaatatata 2701 aaactaatta tatttatagt taaaaataaa aaacagctat aataacatta ctatattata 2761 aaacatatta tatttatgca aaagctgatt cataaaataa ttattagaat aaagccatgt 2821 agccacattt tgtaagttaa agactattat ttaataaaat cgtctaataa aac //