Dbfetch
LOCUS NM_135808 3041 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster uncharacterized protein, transcript variant B (CG7110), mRNA. ACCESSION NM_135808 VERSION NM_135808.5 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3041) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3041) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3041) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3041) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3041) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3041) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3041) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3041) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3041) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3041) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3041) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3041) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3041) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3041) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 22 (bases 1 to 3041) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3041) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 24 (bases 1 to 3041) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 25 (bases 1 to 3041) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033779). On Jul 15, 2014 this sequence version replaced NM_135808.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3041 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2L" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3041 /gene="CG7110" /locus_tag="Dmel_CG7110" /gene_synonym="Dmel\CG7110" /map="34B10-34B11" /db_xref="FLYBASE:FBgn0032521" /db_xref="GeneID:34757" CDS 153..2630 /gene="CG7110" /locus_tag="Dmel_CG7110" /gene_synonym="Dmel\CG7110" /note="CG7110 gene product from transcript CG7110-RB; CG7110-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_609652.3" /db_xref="FLYBASE:FBpp0080078" /db_xref="GeneID:34757" /db_xref="FLYBASE:FBgn0032521" /translation="MDLQEFLSLERQQLEKDRQRLGTQNPCPAVQLMKSNDFKVQCRR AKEFKESTESNELATQSSSLATGGQNEELHLDLHEEEEQPQDDEQGVLPSHPSKSTKE LANQRQLLVGSARPYKSPDASMRRNLENERPLSENRFPIHRSDDMEQWVTDTFYSYFP GFNNENQKRQNYLRERQRENQQNFLKHQMLHPPASKHHKAEQVRKTTQPTAVTAPNRS SQSSTSTSNHSTTDKTDLELIVNSNPNYVPPKIRPGTTRHKLLQDLGHVELSNIVTGD GIMERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLK TIQLEEQLEKERVRAEKARIDSEQNRLMREQLLAKLEQDAQLLNAKETNNLAETPRTS RIKGKTNNATNISTNSNTNRVYKYFSNSAHHEYRRGQPLPPAVELDFEVPQMAKIERE CFHLCDKICPLCDEPLKSYESCCLRCQRKLALKLKQKDSKHIGENGEKPSEDSEESKE EQDRGDFREEDPDHNCQSSYALVCHKCERLYAMCPQCLTKSDVCRACQRERNVCMNCR RNLCSFCLEEVACGRDTERTHVNDKESFADPPSNNSFQVLELNYAVPPAKDSTSSNLT DVSPPYSVNIARNSVFHADYKATPVKPSILEQLPATSGSANTSFELDSADEQAMERVR RQTDQRLSRYLKNYGDLATKQQQKLKQSELHRSKSESRHRGTQTTPQSLARRDVVLRE AAGPNLSMPLLREMPKMTRQETGGPLAENSGQRKIENLKKRWEVPAVQKFTVSTSSPK ILTQVGAIRKQLQAARFFDDEVDPDDY" ORIGIN 1 cacatcgcat tgttagaacg cggaaaacat tcaacttttt cgaaagcaac gcctaattta 61 tccaattaaa tagtgcgtaa aaagtacaga gcaagctttg ttgcgttggc attgaatgtg 121 cgaaagcgaa ttgaagcatt ttgcaatatg aaatggatct gcaagaattc ctttccctgg 181 aacgccaaca actggagaag gatcgccagc ggctgggcac ccaaaatccc tgccccgccg 241 tccagctaat gaagtccaac gactttaaag tgcaatgtcg cagggccaag gagtttaagg 301 agtccacgga gtccaatgaa ctcgccacac aatcgtcttc cttggcaacc ggcggccaaa 361 acgaagaact tcacttggac ttgcacgagg aggaggagca accgcaggat gacgagcagg 421 gtgtgctgcc ctcccacccc tcgaagtcca ccaaggagct cgcgaatcag cgccagctgc 481 tcgtcggcag cgctcgtccg tataagtcgc cagatgcgtc gatgcgacgc aatttggaga 541 acgagcggcc gctcagtgag aaccgcttcc caattcatcg ttcggatgat atggagcaat 601 gggttacgga cacattttat tcgtacttcc ccggctttaa caatgaaaat cagaagcggc 661 aaaattattt gcgtgagcga cagcgcgaga accagcagaa ctttctcaag caccagatgc 721 tccatccgcc ggctagcaag catcataaag ctgaacaagt gaggaagaca acacaaccaa 781 ctgcggttac agcaccaaac cgctccagcc aatccagcac cagcacctcg aaccacagca 841 caacggataa gactgaccta gagttaattg taaatagtaa tcccaactat gtgccgccca 901 aaattcggcc aggcacaaca cgtcataaac ttctccagga tctgggacat gtggagctgt 961 cgaacattgt aacaggagat ggtattatgg agcgcaacct gcggagtgcc gagctggaaa 1021 cagctcggaa gaaggactac cagcgggatc tgatgcagca aatcgatgag aaacgtcgct 1081 ccatagaatt gctaagggaa aaagagcgtc gacaggagga ggctttgact aggcgactgg 1141 aggcacaatt aaagacaata cagttggagg agcagttaga aaaagagcgc gtgagagctg 1201 aaaaggctcg cattgactcg gaacaaaacc gcttgatgcg cgagcaattg ttggccaagc 1261 tggaacagga tgcccagttg ctgaacgcta aggagaccaa caatctagcc gagacgccca 1321 ggacgtcccg catcaaaggc aaaaccaaca acgccaccaa tataagcacg aatagcaaca 1381 ccaatcgggt ctacaaatat ttcagtaact ctgcacatca cgagtacaga cgcggtcagc 1441 ctttaccgcc ggccgttgag ttggactttg aggtgcctca aatggccaaa atagagcgcg 1501 agtgcttcca tctgtgcgac aagatatgtc cgctatgcga tgaaccgctg aagagctacg 1561 agagctgctg tctgcgatgc cagcggaaac tggccctaaa actaaaacaa aaggacagca 1621 agcatattgg agagaatggg gaaaaaccga gcgaagactc agaggagagt aaggaggaac 1681 aagatcgggg tgattttcgg gaggaagatc ccgaccataa ctgccagagc agctacgctc 1741 tggtgtgtca caagtgcgag cgactgtacg ccatgtgccc ccagtgcctg accaaaagcg 1801 atgtctgccg ggcatgccag cgggaacgga atgtctgcat gaactgtcgc cggaatctat 1861 gctcgttttg cctggaggaa gttgcctgcg gcagggacac agagcgcacg catgttaatg 1921 acaaggaatc ctttgcagat ccgccctcaa acaattcatt tcaagttcta gaactaaact 1981 atgctgtgcc accagccaag gactctacgt cgagtaatct gaccgatgtg tcgccaccat 2041 attccgttaa catagcgcgg aactcggtat tccatgccga ctacaaggca acgccggtga 2101 agccgtctat cctcgaacaa ctgccagcga cttcgggtag tgcaaacacc agtttcgagc 2161 tggacagcgc cgatgagcag gctatggagc gggtgcgacg tcagacggat cagcgcttgt 2221 cgcgctatct caagaactac ggcgatctgg ccaccaagca gcaacaaaaa ttaaagcagt 2281 cggagctgca tcgtagcaag agtgagtccc gtcatcgggg cactcaaacg acaccgcagt 2341 cattggccag gagagatgtt gttcttaggg aggctgccgg ccccaatcta tcgatgccgc 2401 tgctgcgcga gatgcccaaa atgacgcgac aggagacagg tggacccttg gctgaaaaca 2461 gcggacagcg gaagattgaa aatctaaaaa agcgttggga agttcctgca gtgcaaaagt 2521 tcaccgtttc aacatcatcg cctaaaatcc taactcaagt gggagccata agaaaacaat 2581 tgcaggcagc acgattcttt gacgatgaag ttgatccgga tgattattaa tgaggtgtca 2641 accactcgtt ttcagaataa cgaaaatgat tggattgaca gctcttttaa accgagcaaa 2701 acgaatttaa atatttttga tgtcttcaca tttgccatta ttatttcaca cttatttcat 2761 tttgtaaaca actcatgtag ttataacttt atagtgagct ggttccaagt gcttcggctg 2821 tttcattcag cgactctaat acataaggca taaagtttgt taacgtttat taatcttatt 2881 ttaacagaaa tctattaact gaaaatgttt aaacgagata aagtcaacaa ttaaagagga 2941 acttaccgga attttctaac aagttgttaa atttcttaaa attatgtatt taggtatgga 3001 tcaataaaac aataatttta ttgaagctaa tcaaattttt g //